Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 3.975810
2R:R:F11 5.406539
3R:R:F27 3.222507
4R:R:I33 2.54405
5R:R:Y34 7.9625468
6R:R:N41 3.58667609
7R:R:R53 3.4875425
8R:R:Y59 3.91286729
9R:R:F61 4.285407
10R:R:L65 4.4125449
11R:R:M68 4.3125455
12R:R:D69 5.74549
13R:R:V77 4.6725466
14R:R:C96 3.755439
15R:R:L100 4.0525405
16R:R:F101 5.835415
17R:R:Y103 6.26667614
18R:R:L104 3.39515
19R:R:E110 6.0725448
20R:R:Y131 5.49679
21R:R:H158 5.1825405
22R:R:L165 3.3875407
23R:R:H175 10.545418
24R:R:F177 9.976515
25R:R:C178 4.535439
26R:R:E179 9.375418
27R:R:T191 4.0325406
28R:R:N194 5.625405
29R:R:M198 4.3375414
30R:R:C202 2.964515
31R:R:Y217 4.422509
32R:R:H243 5.066589
33R:R:Y251 3.976507
34R:R:Y258 4.83286717
35R:R:H265 6.975403
36R:R:Y277 4.9175415
37R:R:T278 3.675407
38R:R:I279 2.9925406
39R:R:N285 4.72549
40R:R:V296 2.51427
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:L104 24.45033.6YesYes105
2R:R:L100 R:R:L104 16.2164.15YesYes055
3R:R:C178 R:R:L100 12.3123.17YesYes095
4R:R:C178 R:R:C96 14.85817.28YesYes399
5R:R:C96 R:R:F11 11.9374.19YesYes399
6L:L:?1 R:R:Y103 28.76095.08YesYes104
7R:R:F177 R:R:Y103 13.650210.32YesYes154
8R:R:Y103 R:R:Y277 26.34518.94YesYes145
9R:R:T278 R:R:Y277 46.66643.75YesYes075
10R:R:I279 R:R:T278 47.72043.04YesYes067
11L:L:?1 R:R:Y258 27.15437.12YesYes107
12R:R:Y258 R:R:Y277 23.04112.98YesYes175
13R:R:I279 R:R:V77 29.99254.61YesYes066
14R:R:L81 R:R:V77 21.75422.98NoYes086
15R:R:F27 R:R:L81 20.66083.65YesNo078
16R:R:F27 R:R:L84 12.11463.65YesNo074
17R:R:E23 R:R:L84 10.38176.63NoNo064
18L:L:?1 R:R:F250 1002.11YesNo006
19R:R:E110 R:R:F250 97.62364.66YesNo086
20R:R:D69 R:R:E110 31.820210.39YesYes498
21R:R:D69 R:R:N41 39.044.04YesYes099
22R:R:N41 R:R:S66 40.23212.98YesNo098
23R:R:I44 R:R:S66 39.19393.1NoNo078
24R:R:I44 R:R:V296 35.90573.07NoYes077
25R:R:L47 R:R:V296 13.33441.49NoYes097
26R:R:V296 R:R:Y59 25.23982.52YesYes279
27R:R:E110 R:R:L65 31.89125.3YesYes489
28R:R:L113 R:R:L65 39.12684.15NoYes069
29R:R:L113 R:R:M68 38.2112.83NoYes065
30R:R:M68 R:R:Q64 30.51754.08YesNo557
31R:R:F60 R:R:Q64 31.50442.34NoNo067
32R:R:C140 R:R:F60 12.70282.79NoNo076
33R:R:C140 R:R:P57 11.85023.77NoNo079
34R:R:F60 R:R:F61 20.05292.14NoYes067
35R:R:D120 R:R:F61 11.67254.78NoYes097
36R:R:P57 R:R:Y131 10.19222.78NoYes099
37R:R:E110 R:R:N285 33.58863.94YesYes489
38R:R:F177 R:R:Q99 12.68711.71YesNo059
39R:R:H158 R:R:L104 16.27133.86YesYes055
40L:L:?1 R:R:M198 10.33832.45YesYes104
41R:R:H158 R:R:M198 14.26995.25YesYes054
42L:L:?1 R:R:C201 10.81592.75YesNo003
43R:R:N285 R:R:Y289 50.14015.81YesNo099
44R:R:H243 R:R:Y289 48.95996.53YesNo099
45R:R:H243 R:R:Y217 39.66766.53YesYes099
46R:R:I213 R:R:Y217 26.21092.42NoYes099
47R:R:I213 R:R:Y251 12.75022.42NoYes097
48R:R:A118 R:R:I213 12.78573.25NoNo099
49R:R:A118 R:R:S216 11.39623.42NoNo099
50R:R:H158 R:R:V197 38.15182.77YesNo053
51R:R:L161 R:R:V197 34.03862.98NoNo033
52R:R:L161 R:R:N194 31.97024.12NoYes035
53R:R:L165 R:R:N194 15.13844.12YesYes075
54R:R:N194 R:R:T191 10.85158.77YesYes056
55R:R:M257 R:R:Y258 13.75683.59NoYes057
56R:R:D270 R:R:M257 10.31862.77NoNo065
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y103 5.08 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L104 3.6 1 Yes Yes 0 5 0 1
L:L:?1 R:R:G107 5.94 1 Yes No 0 4 0 1
L:L:?1 R:R:M198 2.45 1 Yes Yes 0 4 0 1
L:L:?1 R:R:C201 2.75 1 Yes No 0 3 0 1
L:L:?1 R:R:C202 2.75 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F250 2.11 1 Yes No 0 6 0 1
L:L:?1 R:R:Y258 7.12 1 Yes Yes 0 7 0 1
R:R:Y103 R:R:Y72 7.94 1 Yes No 4 5 1 2
R:R:L100 R:R:L104 4.15 0 Yes Yes 5 5 2 1
R:R:L104 R:R:Y103 2.34 1 Yes Yes 5 4 1 1
R:R:F177 R:R:Y103 10.32 1 Yes Yes 5 4 2 1
R:R:Y103 R:R:Y258 2.98 1 Yes Yes 4 7 1 1
R:R:Y103 R:R:Y277 8.94 1 Yes Yes 4 5 1 2
R:R:L104 R:R:S155 3 1 Yes No 5 6 1 2
R:R:H158 R:R:L104 3.86 0 Yes Yes 5 5 2 1
R:R:G107 R:R:G108 2.11 0 No No 4 4 1 2
R:R:E110 R:R:F250 4.66 4 Yes No 8 6 2 1
R:R:H158 R:R:M198 5.25 0 Yes Yes 5 4 2 1
R:R:C201 R:R:H158 8.85 0 No Yes 3 5 1 2
R:R:P181 R:R:Y258 8.34 0 No Yes 4 7 2 1
R:R:C202 R:R:M198 4.86 1 Yes Yes 5 4 1 1
R:R:M198 R:R:Y258 4.79 1 Yes Yes 4 7 1 1
R:R:C202 R:R:Y258 4.03 1 Yes Yes 5 7 1 1
R:R:F250 R:R:T281 10.38 0 No No 6 8 1 2
R:R:M257 R:R:Y258 3.59 0 No Yes 5 7 2 1
R:R:Y258 R:R:Y277 2.98 1 Yes Yes 7 5 1 2
R:R:C202 R:R:L206 1.59 1 Yes No 5 3 1 2
R:R:C202 R:R:L259 1.59 1 Yes No 5 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8UY0_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.11
Number of Linked Nodes 272
Number of Links 300
Number of Hubs 40
Number of Links mediated by Hubs 148
Number of Communities 8
Number of Nodes involved in Communities 47
Number of Links involved in Communities 64
Path Summary
Number Of Nodes in MetaPath 57
Number Of Links MetaPath 56
Number of Shortest Paths 46263
Length Of Smallest Path 3
Average Path Length 13.0349
Length of Longest Path 26
Minimum Path Strength 1.295
Average Path Strength 4.26952
Maximum Path Strength 16.17
Minimum Path Correlation 0.7
Average Path Correlation 0.921034
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 46.734
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 50.7862
Maximum Path Hubs % 100

Details about the values in these tables can be found in the corresponding documentation page .
Code0WU
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code0WU
Name(5S)-2-methyl-5-(prop-1-en-2-yl)cyclohex-2-en-1-one
SynonymsS-carvone
Identifier
FormulaC10 H14 O
Molecular Weight150.218
SMILES
PubChem16724
Formal Charge0
Total Atoms25
Total Chiral Atoms1
Total Bonds25
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProt-
Sequence
>8UY0_nogp_Chain_R
LLLAMSTDF ILLGLFDHP RELFVIIYL ALGNGIILI HLDSRLHTP 
MYFFLSQLS LMDLCYTST TVPKMLVNL LSGDKTISF AGCGAQLFL 
YLTGGTECL LLAMAYDRY VAICHPLRY PVMNPRVCL AAGSWLGSL 
DSIHTVLTL SLPFCGSRI NHFFCEVPL LKACADTSL NETVFVCCV 
LMLIPLSLV SYGILLAVL RMEGRRKAF STCSSHLTV VGFYGAAIY 
MYLQPKSYH SPEQDKVVS LFYTILTPM LNPLIYSLN KEVKGALRR 
VLGLLLLLL LLVLLLLLE LLILRLR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8UY0O2Odorant receptorsOdorant family 2consOR2Homo sapiensS-carvone-Gs/β1/γ23.22024-10-30doi.org/10.1038/s41586-024-08126-0
8UY0 (No Gprot) O2Odorant receptorsOdorant family 2consOR2Homo sapiensS-carvone-3.22024-10-30doi.org/10.1038/s41586-024-08126-0




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8UY0_nogp.zip



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