Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:I31 5.0875416
2R:R:Y35 7.135417
3R:R:F39 7.1025406
4R:R:F54 5.5575403
5R:R:R62 11.335437
6R:R:F67 5.575407
7R:R:D75 5.5125409
8R:R:F78 9.396516
9R:R:W85 6.242516
10R:R:Y88 6.165415
11R:R:W95 6.25556918
12R:R:F97 10.962516
13R:R:C102 5.015419
14R:R:Y107 5.708505
15R:R:F110 7.06485
16R:R:N112 6.2675408
17R:R:Y114 3.874586
18R:R:R127 4.955409
19R:R:W154 6.1175409
20R:R:R168 8.6575415
21R:R:C181 6.195419
22R:R:Y182 6.935494
23R:R:Y185 6.664505
24R:R:L253 6.195437
25R:R:F257 9.3525408
26R:R:W261 10.888559
27R:R:Y264 7.27456
28R:R:H265 8.266558
29R:R:W279 5.96333601
30R:R:F291 4.2575404
31R:R:Y299 9.57517
32R:R:N305 5.2075439
33R:R:Y309 6.875639
34R:R:D313 5.38438
35R:R:R315 9.5575437
36R:R:F316 4.42739
37S:S:Y35 5.084507
38S:S:N46 5.8625409
39S:S:L50 4.0925407
40S:S:T52 4.7375467
41S:S:R55 6.325466
42S:S:R62 13.7725477
43S:S:D75 7.625429
44S:S:F78 9.41526
45S:S:W85 8.2625426
46S:S:W95 6.71556928
47S:S:F97 11.51526
48S:S:Y107 6.72505
49S:S:F110 7.66254125
50S:S:N112 5.6625428
51S:S:Y114 5.618336126
52S:S:F118 3.59505
53S:S:Y128 8.982508
54S:S:L129 4.3025405
55S:S:S145 2.8225404
56S:S:W154 4.745609
57S:S:R168 8.382525
58S:S:D184 5.195403
59S:S:Y185 8.61405
60S:S:F214 7.07406
61S:S:Y221 5.65408
62S:S:F223 3.83405
63S:S:I249 3.9025407
64S:S:F257 8.34548
65S:S:W261 9.57667649
66S:S:Y264 5.355446
67S:S:H265 8.18448
68S:S:W279 5.82167601
69S:S:L287 7.285404
70S:S:Y299 9.468527
71S:S:N301 6.9875449
72S:S:Y309 7.565409
73S:S:D313 5.8175478
74S:S:R315 9.0025477
75S:S:F316 5.396509
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F78 R:R:Y299 12.274218.57YesYes167
2R:R:D75 R:R:N112 29.07865.39YesYes098
3R:R:F78 R:R:N112 29.987612.08YesYes068
4R:R:D75 R:R:S302 29.03695.89YesNo098
5R:R:F78 R:R:S302 29.64293.96YesNo068
6R:R:F316 R:R:Y309 45.5144.13YesYes399
7R:R:N305 R:R:Y309 48.00695.81YesYes399
8R:R:D75 R:R:N305 54.19144.04YesYes099
9R:R:D65 R:R:R61 10.02837.15NoNo086
10R:R:D313 R:R:R62 27.5795.96YesYes387
11R:R:D313 R:R:F316 38.13293.58YesYes389
12R:R:L246 R:R:R62 21.42283.64NoYes077
13R:R:L246 R:R:R127 20.02239.72NoYes079
14R:R:F67 R:R:L123 12.24897.31YesNo078
15R:R:I250 R:R:L123 12.96067.14NoNo078
16R:R:I250 R:R:R127 13.67123.76NoYes079
17R:R:I109 R:R:Y299 29.28646.04NoYes167
18R:R:I109 R:R:W85 79.04545.87NoYes166
19R:R:F97 R:R:W95 99.02415.03YesYes168
20R:R:C102 R:R:W95 10.01645.22YesYes198
21R:R:F97 S:S:F101 99.52146.43YesNo065
22R:R:F101 S:S:F101 99.744619.29NoNo055
23R:R:F101 S:S:F97 99.9436.43NoYes056
24R:R:C181 R:R:R168 10.33728.36YesYes195
25R:R:S298 R:R:Y299 27.02115.09NoYes077
26R:R:S298 R:R:W261 26.70529.88NoYes079
27R:R:F257 R:R:W261 16.578220.04YesYes089
28R:R:F257 R:R:L120 13.13416.09YesNo088
29R:R:L120 R:R:V254 12.74395.96NoNo087
30R:R:V254 R:R:Y221 12.35068.83NoNo078
31R:R:V251 R:R:Y221 11.92713.79NoNo038
32R:R:L247 R:R:V251 10.68632.98NoNo063
33R:R:I224 R:R:L247 10.27084.28NoNo086
34R:R:M183 R:R:R168 17.6954.96NoYes055
35S:S:F97 S:S:W95 10015.03YesYes268
36S:S:W85 S:S:W95 64.29519.37YesYes268
37S:S:I109 S:S:W85 64.86597.05NoYes266
38S:S:I109 S:S:Y299 20.86297.25NoYes267
39S:S:S298 S:S:Y299 20.09975.09NoYes077
40S:S:S298 S:S:W261 19.962812.36NoYes079
41S:S:W261 S:S:Y264 10.55243.86YesYes496
42S:S:F78 S:S:I109 43.92077.54YesNo266
43S:S:F78 S:S:N112 22.95519.67YesYes268
44S:S:D75 S:S:N112 22.43444.04YesYes298
45S:S:F78 S:S:S302 22.40073.96YesNo268
46S:S:D75 S:S:S302 22.227110.31YesNo298
47S:S:D75 S:S:N305 37.29986.73YesNo099
48S:S:L253 S:S:N305 41.7594.12NoNo079
49S:S:L253 S:S:Y309 41.24679.38NoYes079
50S:S:I249 S:S:Y309 33.44364.84YesYes079
51S:S:D313 S:S:I249 27.55024.2YesYes087
52S:S:D313 S:S:R62 20.93535.96YesYes787
53S:S:L246 S:S:R62 18.81928.5NoYes077
54S:S:L246 S:S:R127 17.709410.93NoNo079
55S:S:D126 S:S:R127 16.59563.57NoNo089
56S:S:C102 S:S:W95 16.70725.22NoYes298
57S:S:C102 S:S:R168 16.46126.96NoYes295
58S:S:R168 S:S:S106 12.022814.5YesNo055
59S:S:S106 S:S:V164 11.65394.85NoNo054
60S:S:F110 S:S:V164 24.436414.42YesNo054
61S:S:F110 S:S:Y114 19.79677.22YesYes1256
62S:S:F118 S:S:Y114 16.28425.16YesYes056
63S:S:F118 S:S:L153 14.86444.87YesNo056
64S:S:L153 S:S:W154 13.90484.56NoYes069
65S:S:C181 S:S:W95 16.70725.22NoYes298
66S:S:C181 S:S:R168 16.46125.57NoYes295
67S:S:M183 S:S:R168 20.583211.17NoYes055
68S:S:M183 S:S:V164 13.5734.56NoNo054
69S:S:D126 S:S:L129 15.47784.07NoYes085
70S:S:F125 S:S:L129 11.53434.87NoYes065
71S:S:C220 S:S:F125 10.9675.59NoNo066
72S:S:C220 S:S:Y128 10.39878.06NoYes068
73S:S:M183 S:S:Y185 10.50588.38NoYes055
74R:R:W85 R:R:W95 74.64178.43YesYes168
75R:R:F78 R:R:I109 49.646.28YesNo166
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8XQI
Class A
SubFamily Peptide
Type Apelin
SubType Apelin
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.25
Date 2025-01-22
D.O.I. doi.org/10.1038/s41467-024-55555-6
Net Summary
Imin 3.57
Number of Linked Nodes 559
Number of Links 606
Number of Hubs 75
Number of Links mediated by Hubs 289
Number of Communities 12
Number of Nodes involved in Communities 72
Number of Links involved in Communities 94
Path Summary
Number Of Nodes in MetaPath 76
Number Of Links MetaPath 75
Number of Shortest Paths 314991
Length Of Smallest Path 3
Average Path Length 21.4899
Length of Longest Path 55
Minimum Path Strength 1.07
Average Path Strength 7.47817
Maximum Path Strength 16.2
Minimum Path Correlation 0.71
Average Path Correlation 0.970279
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 54.4721
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 51.2903
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • cell communication   • apelin receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • developmental process   • heart development   • multicellular organism development   • multicellular organismal process   • anatomical structure development   • animal organ development   • circulatory system development   • system development   • atrioventricular valve development   • heart valve development   • cardiac chamber morphogenesis   • heart morphogenesis   • ventricular septum development   • anatomical structure morphogenesis   • cardiac septum development   • cardiac septum morphogenesis   • ventricular septum morphogenesis   • cardiac chamber development   • animal organ morphogenesis   • cardiac ventricle development   • regulation of body fluid levels   • regulation of biological quality   • blood vessel morphogenesis   • tube development   • angiogenesis   • vasculature development   • tube morphogenesis   • anatomical structure formation involved in morphogenesis   • blood vessel development   • regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis   • positive regulation of cell population proliferation   • endothelial cell proliferation   • positive regulation of biological process   • positive regulation of endothelial cell proliferation   • epithelial cell proliferation   • positive regulation of cellular process   • positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis   • cell population proliferation   • blood vessel endothelial cell proliferation involved in sprouting angiogenesis   • positive regulation of epithelial cell proliferation   • sprouting angiogenesis   • regulation of endothelial cell proliferation   • regulation of cell population proliferation   • regulation of epithelial cell proliferation   • regulation of biosynthetic process   • regulation of macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • regulation of gene expression   • biosynthetic process   • regulation of macromolecule biosynthetic process   • metabolic process   • macromolecule metabolic process   • regulation of metabolic process   • embryonic morphogenesis   • embryo development   • gastrulation   • mesenchyme morphogenesis   • endocardial cushion morphogenesis   • mesenchyme development   • tissue development   • endocardial cushion formation   • tissue morphogenesis   • endocardial cushion development   • artery development   • aorta development   • regulation of localization   • negative adaptation of signaling pathway   • regulation of G protein-coupled receptor internalization   • receptor internalization   • negative regulation of biological process   • regulation of signal transduction   • regulation of receptor internalization   • vesicle-mediated transport   • negative regulation of G protein-coupled receptor signaling pathway   • localization   • positive regulation of endocytosis   • regulation of G protein-coupled receptor signaling pathway   • positive regulation of receptor-mediated endocytosis   • positive regulation of G protein-coupled receptor internalization   • establishment of localization   • positive regulation of receptor internalization   • regulation of response to stimulus   • adaptation of signaling pathway   • receptor-mediated endocytosis   • import into cell   • regulation of cellular component organization   • positive regulation of cellular component organization   • transport   • negative regulation of signaling   • desensitization of G protein-coupled receptor signaling pathway   • negative regulation of cell communication   • cellular component organization   • negative regulation of cellular process   • cellular component organization or biogenesis   • regulation of endocytosis   • G protein-coupled receptor internalization   • regulation of signaling   • regulation of transport   • negative regulation of response to stimulus   • regulation of receptor-mediated endocytosis   • regulation of vesicle-mediated transport   • negative regulation of signal transduction   • positive regulation of transport   • regulation of cell communication   • endocytosis   • cellular developmental process   • vasculogenesis   • cell differentiation   • regulation of developmental process   • regulation of vasculature development   • positive regulation of developmental process   • regulation of multicellular organismal process   • regulation of anatomical structure morphogenesis   • regulation of multicellular organismal development   • positive regulation of angiogenesis   • positive regulation of vasculature development   • regulation of angiogenesis   • positive regulation of multicellular organismal process   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • venous blood vessel development   • regulation of calcium ion transport   • positive regulation of cation transmembrane transport   • positive regulation of calcium ion transport   • intracellular calcium ion homeostasis   • calcium ion transport   • positive regulation of monoatomic ion transport   • positive regulation of monoatomic ion transmembrane transport   • monoatomic cation homeostasis   • monoatomic cation transport   • intracellular monoatomic ion homeostasis   • regulation of release of sequestered calcium ion into cytosol   • regulation of monoatomic ion transport   • inorganic ion transmembrane transport   • inorganic cation transmembrane transport   • maintenance of location   • transmembrane transport   • release of sequestered calcium ion into cytosol   • regulation of transmembrane transport   • chemical homeostasis   • cellular localization   • inorganic ion homeostasis   • homeostatic process   • monoatomic ion transmembrane transport   • calcium ion homeostasis   • regulation of monoatomic ion transmembrane transport   • negative regulation of sequestering of calcium ion   • metal ion transport   • maintenance of location in cell   • regulation of calcium ion transmembrane transport   • monoatomic cation transmembrane transport   • intracellular monoatomic cation homeostasis   • monoatomic ion homeostasis   • positive regulation of calcium ion transmembrane transport   • positive regulation of transmembrane transport   • monoatomic ion transport   • intracellular chemical homeostasis   • positive regulation of release of sequestered calcium ion into cytosol   • regulation of metal ion transport   • regulation of sequestering of calcium ion   • calcium ion transmembrane import into cytosol   • sequestering of calcium ion   • cellular homeostasis   • regulation of monoatomic cation transmembrane transport   • calcium ion transmembrane transport   • negative regulation of intracellular signal transduction   • intracellular signal transduction   • cAMP-mediated signaling   • regulation of intracellular signal transduction   • intracellular signaling cassette   • negative regulation of cAMP-mediated signaling   • regulation of cAMP-mediated signaling   • adult heart development   • negative regulation of metabolic process   • negative regulation of gene expression   • negative regulation of biosynthetic process   • negative regulation of macromolecule biosynthetic process   • negative regulation of macromolecule metabolic process   • smooth muscle cell differentiation   • muscle cell differentiation   • muscle structure development   • vascular associated smooth muscle cell differentiation   • coronary vasculature development   • gap junction assembly   • regulation of gap junction assembly   • regulation of cellular component biogenesis   • cellular component biogenesis   • regulation of cell junction assembly   • cell junction organization   • cellular component assembly   • cell junction assembly   • cell-cell junction assembly   • cell-cell junction organization   • pattern specification process   • embryonic heart tube development   • embryonic heart tube morphogenesis   • heart looping   • determination of bilateral symmetry   • epithelial tube morphogenesis   • embryonic organ development   • determination of left/right symmetry   • specification of symmetry   • embryonic organ morphogenesis   • epithelium development   • morphogenesis of an epithelium   • determination of heart left/right asymmetry   • regionalization   • left/right pattern formation   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP35414
Sequence
>8XQI_Chain_R
WKSSGALIP AIYMLVFLL GTTGNGLVL WTVFRSSRE KRRSADIFI 
ASLAVADLT FVVTLPLWA TYTYRDYDW PFGTFFCKL SSYLIFVNM 
YASVFCLTG LSFDRYLAI VRPVANARL RLRVSGAVA TAVLWVLAA 
LLAMPVMVL RTTGDLENT TKVQCYMDY SMVATVSSE WAWEVGLGV 
SSTTVGFVV PFTIMLTCY FFIAQTIAG HFRKRRRLL SIIVVLVVT 
FALCWMPYH LVKTLYMLG SLLHWPCDF DLFLMNIFP YCTCISYVN 
SCLNPFLYA FFDPRFRQA CTS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8Z74APeptideApelinApelinHomo sapiensAgonistic antibody--3.012025-01-2210.1038/s41467-024-55555-6
8XQJAPeptideApelinApelinHomo sapiensJN241--2.952025-01-22doi.org/10.1038/s41467-024-55555-6
8XQIAPeptideApelinApelinHomo sapiens---3.252025-01-22doi.org/10.1038/s41467-024-55555-6
8Z7JAPeptideApelinApelinHomo sapiensAgonistic antibody-Gi1/β1/γ23.122025-01-2210.1038/s41467-024-55555-6
8XQFAPeptideApelinApelinHomo sapiensApelin-13-Gi1/β1/γ23.132025-01-22doi.org/10.1038/s41467-024-55555-6
8XQEAPeptideApelinApelinHomo sapiensApelin-13-Gi1/β1/γ23.482025-01-22doi.org/10.1038/s41467-024-55555-6
8S4DAPeptideApelinApelinHomo sapiensCMF-019--2.582024-12-04doi.org/10.1038/s41467-024-55381-w
8XZJAPeptideApelinApelinHomo sapiensWN353-Gi1/β1/γ232024-03-2010.1016/j.cell.2024.02.004
8XZIAPeptideApelinApelinHomo sapiensCMF-019-Gi1/β1/γ22.72024-03-20doi.org/10.1016/j.cell.2024.02.004
8XZHAPeptideApelinApelinHomo sapiensMM07-Gi1/β1/γ22.062024-03-2010.1016/j.cell.2024.02.004
8XZGAPeptideApelinApelinHomo sapiensApelin-13-Gi1/β1/γ23.22024-03-2010.1016/j.cell.2024.02.004
8XZFAPeptideApelinApelinHomo sapiensWN561-Gi1/β1/γ232024-03-2010.1016/j.cell.2024.02.004
7SUSAPeptideApelinApelinHomo sapiensPubChem 122701908--2.72022-07-2710.1038/s41594-022-00797-5
7W0PAPeptideApelinApelinHomo sapiensElabela-Gi1/β1/γ23.162022-07-2710.1038/s41594-022-00797-5
7W0OAPeptideApelinApelinHomo sapiensElabela-Gi1/β1/γ23.782022-07-2710.1038/s41594-022-00797-5
7W0NAPeptideApelinApelinHomo sapiensElabela-Gi1/β1/γ24.212022-07-2710.1038/s41594-022-00797-5
7W0MAPeptideApelinApelinHomo sapiensPubChem 122701908-Gi1/β1/γ23.712022-07-2710.1038/s41594-022-00797-5
7W0LAPeptideApelinApelinHomo sapiensPubChem 122701908-Gi1/β1/γ23.572022-07-2710.1038/s41594-022-00797-5
6KNMAPeptideApelinApelinHomo sapiensJN241-9--3.22020-01-2910.1126/sciadv.aax7379
5VBLAPeptideApelinApelinHomo sapiensApelin mimetic peptide agonist--2.62017-05-3110.1016/j.str.2017.04.008




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XQI.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.