Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:K32 4.025423
2R:R:L36 5.0575426
3R:R:F48 5.3575406
4R:R:Y58 4.14507
5R:R:T78 4.9775418
6R:R:Y93 5.43425
7R:R:W99 7.316569
8R:R:I109 5.254505
9R:R:F115 4.895615
10R:R:N116 5.092508
11R:R:Y118 5.942507
12R:R:F123 8.9425418
13R:R:L124 4.8375408
14R:R:F127 6.206539
15R:R:F130 5.186508
16R:R:I136 7.1225408
17R:R:W158 6.11519
18R:R:M168 5.9925404
19R:R:T173 4.8575444
20R:R:R180 11.37452
21R:R:D185 5.5925405
22R:R:E191 6.7075443
23R:R:K196 4.5325403
24R:R:Y218 4.926508
25R:R:F254 9.4975408
26R:R:F257 4.764577
27R:R:H258 9.45408
28R:R:R261 6.315475
29R:R:I272 4.2425401
30R:R:H281 8.195424
31R:R:Y284 8.9875475
32R:R:F296 4.475408
33R:R:L301 2.47407
34R:R:Y302 6.066539
35R:R:F309 5.88408
36W:W:?1 7.63222900
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I272 R:R:I276 14.08622.94YesNo013
2R:R:I276 R:R:Q279 12.54634.12NoNo033
3R:R:I272 R:R:S267 21.63761.55YesNo015
4R:R:I280 R:R:S267 23.11834.64NoNo055
5R:R:I263 R:R:I280 24.58912.94NoNo055
6R:R:I259 R:R:I263 26.051.47NoNo065
7R:R:I259 R:R:L255 27.50115.71NoNo065
8R:R:F207 R:R:L255 30.37363.65NoNo085
9R:R:F207 R:R:H258 63.29422.63NoYes088
10R:R:F257 R:R:H258 56.29534.53YesYes078
11R:R:F257 R:R:Y284 52.23347.22YesYes775
12R:R:T187 R:R:Y284 80.849911.24NoYes045
13R:R:R264 R:R:T187 37.890511.64NoNo054
14R:R:H281 R:R:R264 25.941515.8YesNo045
15R:R:H281 R:R:K32 13.82463.93YesYes243
16R:R:D185 R:R:T187 45.26927.23YesNo054
17R:R:D185 R:R:R110 57.29734.76YesNo055
18R:R:L89 R:R:R110 11.05086.07NoNo065
19R:R:R288 R:R:Y284 59.789712.35NoYes065
20R:R:D185 R:R:R288 45.63945.96YesNo056
21R:R:L36 R:R:Y40 12.7197.03YesNo067
22R:R:P289 R:R:R288 17.21532.88NoNo066
23R:R:I39 R:R:P289 15.61131.69NoNo056
24R:R:I39 R:R:I43 14.182.94NoNo057
25R:R:F296 R:R:I43 10.97186.28YesNo087
26R:R:F207 R:R:L211 52.75656.09NoNo086
27R:R:F250 R:R:L211 50.48623.65NoNo096
28R:R:F250 R:R:L124 96.59443.65NoYes098
29R:R:L124 R:R:N298 10.02428.24YesNo089
30R:R:D79 R:R:N298 21.10464.04NoNo099
31R:R:D79 R:R:N51 17.96556.73NoNo099
32R:R:L80 R:R:N51 14.7872.75NoNo079
33R:R:F48 R:R:L80 13.1839.74YesNo067
34R:R:L124 R:R:Y302 1004.69YesYes089
35R:R:M72 R:R:Y302 38.20644.79NoYes389
36R:R:M72 R:R:Y58 45.21995.99NoYes087
37R:R:V54 R:R:Y58 29.44085.05NoYes087
38R:R:V303 R:R:V54 19.0024.81NoNo068
39R:R:F309 R:R:V303 16.88479.18YesNo086
40R:R:F309 R:R:T57 10.66587.78YesNo087
41R:R:F130 R:R:I71 18.96756.28YesNo087
42R:R:F127 R:R:I71 18.72076.28YesNo097
43R:R:F130 R:R:I144 22.471710.05YesNo084
44R:R:I144 W:W:?1 23.56255.43NoYes040
45R:R:T205 W:W:?1 32.09125.6NoYes040
46R:R:T205 R:R:T206 33.08824.71NoNo045
47R:R:T206 R:R:Y118 34.70717.49NoYes057
48R:R:H258 R:R:Y118 12.39336.53YesYes087
49R:R:L122 W:W:?1 24.92975.26NoYes060
50R:R:L122 R:R:V157 23.62674.47NoNo067
51R:R:F123 R:R:V157 22.338510.49YesNo087
52R:R:F123 R:R:W158 18.409810.02YesYes189
53R:R:L202 R:R:Y118 27.49625.86NoYes057
54R:R:L202 R:R:Y198 26.30184.69NoNo055
55R:R:M168 R:R:Y198 22.64454.79YesNo045
56R:R:H114 R:R:M168 15.18199.19NoYes064
57R:R:F113 R:R:H114 13.92337.92NoNo066
58R:R:F113 R:R:Y82 12.842412.38NoNo067
59R:R:N116 R:R:Y82 12.44764.65YesNo087
60R:R:C183 R:R:R110 44.15384.18NoNo095
61R:R:C183 R:R:W99 38.97646.53NoYes699
62R:R:I109 R:R:W99 17.89654.7YesYes059
63R:R:F101 R:R:W99 14.949913.03NoYes079
64R:R:Y92 R:R:Y93 10.97689.93NoYes055
65R:R:D185 R:R:S188 30.35394.42YesNo055
66R:R:L184 R:R:S188 27.48637.51NoNo045
67R:R:A182 R:R:L184 24.71744.73NoNo034
68R:R:A182 R:R:R177 22.10164.15NoNo033
69R:R:R177 R:R:R180 16.371418.13NoYes532
70R:R:F115 R:R:W158 11.04095.01YesYes159
71R:R:L117 R:R:Y118 66.84274.69NoYes087
72R:R:F250 R:R:F254 49.24739.65NoYes098
73R:R:R261 R:R:Y118 95.03975.14YesYes057
74R:R:R131 R:R:Y302 53.58086.17NoYes399
75R:R:R131 R:R:Y218 63.27926.17NoYes098
76R:R:S128 R:R:Y218 10.35496.36NoYes098
77R:R:I221 R:R:Y218 34.6332.42NoYes088
78R:R:I135 R:R:I221 20.86271.47NoNo088
79R:R:I135 R:R:I136 12.70421.47NoYes088
80R:R:N199 R:R:R261 20.59139.64NoYes065
81R:R:I265 R:R:N199 17.53125.66NoNo056
82R:R:I195 R:R:I265 15.98642.94NoNo045
83R:R:I195 R:R:S189 14.43173.1NoNo044
84R:R:N179 R:R:R180 11.80110.85NoYes052
85R:R:R264 R:R:R268 13.97277.46NoNo054
86R:R:L192 R:R:R268 12.269.72NoNo024
87R:R:L192 R:R:L269 10.537511.07NoNo022
88R:R:T243 R:R:Y218 16.89454.99NoYes088
89R:R:I222 R:R:T243 14.81666.08NoNo048
90R:R:I222 R:R:R240 12.72893.76NoNo046
91R:R:I221 R:R:L225 12.4922.85NoNo088
92R:R:L246 R:R:Y302 11.845410.55NoYes089
93R:R:F254 R:R:N294 15.433610.87YesNo089
94R:R:N294 R:R:N298 14.17016.81NoNo099
95R:R:F254 R:R:L117 66.24553.65YesNo088
96R:R:R261 R:R:Y284 87.88815.14YesYes755
97R:R:F127 R:R:R131 11.351911.76YesNo399
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:L122 R:R:V157 4.47 0 No No 6 7 1 2
R:R:L122 W:W:?1 5.26 0 No Yes 6 0 1 0
R:R:F130 R:R:I144 10.05 0 Yes No 8 4 2 1
R:R:C133 R:R:I144 4.91 0 No No 5 4 2 1
R:R:C141 W:W:?1 6.03 0 No Yes 6 0 1 0
R:R:I144 W:W:?1 5.43 0 No Yes 4 0 1 0
R:R:R148 W:W:?1 6.16 0 No Yes 4 0 1 0
R:R:C149 W:W:?1 16.09 0 No Yes 3 0 1 0
R:R:V152 W:W:?1 16.99 0 No Yes 2 0 1 0
R:R:I160 W:W:?1 3.62 0 No Yes 4 0 1 0
R:R:T205 R:R:T206 4.71 0 No No 4 5 1 2
R:R:T205 W:W:?1 5.6 0 No Yes 4 0 1 0
R:R:L209 W:W:?1 3.51 0 No Yes 5 0 1 0
R:R:I160 R:R:V156 3.07 0 No No 4 4 1 2
R:R:I201 R:R:T205 1.52 0 No No 4 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8YYX_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.51
Number of Linked Nodes 277
Number of Links 292
Number of Hubs 36
Number of Links mediated by Hubs 143
Number of Communities 7
Number of Nodes involved in Communities 31
Number of Links involved in Communities 38
Path Summary
Number Of Nodes in MetaPath 98
Number Of Links MetaPath 97
Number of Shortest Paths 52184
Length Of Smallest Path 3
Average Path Length 14.3267
Length of Longest Path 28
Minimum Path Strength 1.295
Average Path Strength 6.15492
Maximum Path Strength 16.54
Minimum Path Correlation 0.7
Average Path Correlation 0.926763
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 45.2459
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.755
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1D
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1D
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ96P68
Sequence
>8YYX_nogp_Chain_R
NCTDENIPL KMHYLPVIY GIIFLVGFP GNAVVISTY IFKMRPWKS 
STIIMLNLA CTDLLYLTS LPFLIHYYA SGENWIFGD FMCKFIRFS 
FHFNLYSSI LFLTCFSIF RYCVIIHPM SCFSIHKTR CAVVACAVV 
WIISLVAVI PMTFLITST NRTNRSACL DLTSSDELN TIKWYNLIL 
TATTFCLPL VIVTLCYTT IIHTLTHGL QTDSCLKQK ARRLTILLL 
LAFYVCFLP FHILRVIRI ESRLLSISC SIENQIHEA YIVSRPLAA 
LNTFGNLLL YVVVSDNFQ QAVCSTVRC KVS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8YYXAAlicarboxylic acidOxoglutarateOxoglutarateHomo sapiens-Leukotriene e4chim(Gi1-CtGq)/β1/γ22.842025-04-09To be published
8YYX (No Gprot) AAlicarboxylic acidOxoglutarateOxoglutarateHomo sapiens-Leukotriene e42.842025-04-09To be published
8YYWAAlicarboxylic acidOxoglutarateOxoglutarateHomo sapiensα-ketoglutarateα-ketoglutaratechim(Gi1-CtGq)/β1/γ23.192025-04-09To be published
8YYW (No Gprot) AAlicarboxylic acidOxoglutarateOxoglutarateHomo sapiensα-ketoglutarateα-ketoglutarate3.192025-04-09To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8YYX_nogp.zip



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