Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:C22 4.1675409
2R:R:Y38 6.968507
3R:R:S45 3.6925408
4R:R:N49 4.958509
5R:R:Y59 8.5775405
6R:R:E60 8.225436
7R:R:F69 5.068507
8R:R:D77 6.065419
9R:R:F80 6.05833617
10R:R:Y91 6.69405
11R:R:W95 7.11333619
12R:R:L97 6.735418
13R:R:N106 7.5625416
14R:R:I111 6.0725406
15R:R:Y114 5.528517
16R:R:Y128 6.016568
17R:R:R146 5.558548
18R:R:W154 7.4575459
19R:R:Y177 7.774514
20R:R:Y183 8.09713
21R:R:H190 5.93416
22R:R:F194 3.555408
23R:R:Y205 5.854509
24R:R:Y234 5.8575409
25R:R:W238 5.29167619
26R:R:N242 6.6575408
27R:R:F251 5.9725402
28R:R:R273 3.955406
29R:R:F277 6.89417
30R:R:H279 7.6275419
31R:R:C280 3.9325409
32R:R:Y287 5.015609
33R:R:V288 7.235427
34R:R:F289 8.455427
35R:R:H297 7.905434
36R:R:L298 5.825426
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:S3 R:R:N106 48.22395.96NoYes106
2R:R:D164 R:R:N106 26.74529.42NoYes146
3R:R:D164 R:R:Y177 25.218310.34NoYes144
4R:R:H168 R:R:N106 26.745211.48NoYes156
5R:R:H168 R:R:Y177 25.21839.8NoYes154
6L:L:S3 R:R:F109 1005.28NoNo106
7L:L:E4 R:R:Y177 12.70296.73NoYes104
8R:R:Y177 R:R:Y183 28.21866.95YesYes143
9R:R:F109 R:R:F277 10.90816.43NoYes167
10R:R:F277 R:R:R273 23.26815.34YesYes076
11R:R:R273 R:R:Y91 13.23874.12YesYes065
12L:L:S6 R:R:Y91 10.57065.09NoYes005
13R:R:F109 R:R:F80 90.10458.57NoYes167
14R:R:F80 R:R:L113 61.34486.09YesNo178
15R:R:H190 R:R:L113 34.13885.14YesNo168
16R:R:H190 R:R:N242 46.49348.93YesYes068
17R:R:N191 R:R:N242 27.44178.17NoYes048
18R:R:F246 R:R:N191 25.99524.83NoNo064
19R:R:F246 R:R:L250 24.54334.87NoNo064
20R:R:I255 R:R:L250 23.08067.14NoNo034
21R:R:I255 R:R:I256 20.12327.36NoNo031
22R:R:F251 R:R:I256 18.628410.05YesNo021
23R:R:W87 R:R:W95 56.24977.5NoYes169
24R:R:P90 R:R:W95 17.40695.4NoYes059
25R:R:P90 R:R:S89 14.01025.34NoNo054
26R:R:S89 R:R:W93 12.29574.94NoNo044
27R:R:F277 R:R:Y38 21.80027.22YesYes077
28R:R:N274 R:R:Y38 18.06052.33NoYes057
29R:R:F80 R:R:L84 17.89983.65YesNo077
30R:R:I88 R:R:Y38 15.07637.25NoYes077
31R:R:C280 R:R:F80 90.47954.19YesYes097
32R:R:C280 R:R:S45 37.61055.16YesYes098
33R:R:C281 R:R:S45 12.211.72NoYes088
34R:R:I88 R:R:P85 12.08141.69NoNo078
35R:R:N49 R:R:S45 31.914.47YesYes098
36R:R:C280 R:R:D77 61.11444.67YesYes099
37R:R:D77 R:R:N49 61.56984.04YesYes099
38R:R:C74 R:R:N49 75.39783.15NoYes099
39R:R:C74 R:R:V52 69.59013.42NoNo098
40R:R:F289 R:R:V52 10.55453.93YesNo278
41R:R:V288 R:R:V52 57.026511.22YesNo278
42R:R:F294 R:R:V288 51.05283.93NoYes097
43R:R:E60 R:R:F294 48.81335.83YesNo069
44R:R:E60 R:R:H297 39.919611.08YesYes364
45R:R:H297 R:R:Y59 14.535215.24YesYes045
46R:R:D77 R:R:N283 49.09726.73YesNo199
47R:R:N283 R:R:Y287 54.12273.49NoYes099
48R:R:M123 R:R:Y287 31.93144.79NoYes089
49R:R:F69 R:R:M123 30.47413.73YesNo078
50R:R:F69 R:R:L65 18.71426.09YesNo076
51R:R:L65 R:R:R146 14.32094.86NoYes068
52R:R:F119 R:R:F69 11.60465.36NoYes087
53R:R:I70 R:R:V288 10.57594.61NoYes087
54R:R:H190 R:R:Y114 22.06274.36YesYes167
55R:R:S110 R:R:Y114 14.96385.09NoYes047
56R:R:S110 R:R:S161 13.72624.89NoNo047
57R:R:I111 R:R:S161 12.50477.74YesNo067
58R:R:L113 R:R:W238 27.05064.56NoYes189
59R:R:H279 R:R:W238 26.31668.46YesYes199
60R:R:D77 R:R:H279 20.98588.82YesYes199
61R:R:L97 R:R:W95 14.010211.39YesYes189
62R:R:C102 R:R:W95 23.99687.84NoYes199
63R:R:C102 R:R:V170 22.42163.42NoNo095
64R:R:D99 R:R:V170 20.76085.84NoNo025
65R:R:D99 R:R:K103 19.08929.68NoNo027
66R:R:K103 R:R:K169 17.40694.31NoNo074
67R:R:W238 R:R:Y234 43.63783.86YesYes099
68R:R:I201 R:R:Y234 31.41177.25NoYes089
69R:R:I201 R:R:T124 30.19026.08NoNo089
70R:R:C204 R:R:T124 34.02093.38NoNo089
71R:R:T124 R:R:Y205 24.58084.99NoYes099
72R:R:R127 R:R:Y287 19.54464.12NoYes099
73R:R:R127 R:R:Y205 18.16237.2NoYes099
74R:R:I230 R:R:Y287 19.79113.63NoYes089
75R:R:I230 R:R:Y205 18.40346.04NoYes089
76R:R:C204 R:R:Y128 31.81369.41NoYes088
77R:R:V132 R:R:Y128 16.01397.57NoYes088
78R:R:S133 R:R:V132 11.67431.62NoNo068
79R:R:K169 R:R:S178 14.01026.12NoNo045
80R:R:E179 R:R:S178 12.29574.31NoNo045
81R:R:E179 R:R:W182 10.570610.9NoNo043
82R:R:F194 R:R:N242 15.7466.04YesYes088
83R:R:I227 R:R:Y205 22.74857.25NoYes079
84R:R:I227 R:R:T223 13.04053.04NoNo078
85R:R:H297 R:R:T296 23.81461.37YesNo044
86R:R:T296 R:R:V292 21.45731.59NoNo045
87R:R:R295 R:R:V292 19.08922.62NoNo085
88R:R:R222 R:R:R295 16.70513.2NoNo078
89R:R:K225 R:R:R222 12.15116.19NoNo067
90L:L:S3 R:R:W87 50.913511.12NoNo106
91R:R:F277 R:R:F80 34.81928.57YesYes177
92R:R:L84 R:R:Y38 16.372910.55NoYes077
93R:R:H190 R:R:W238 28.97945.29YesYes169
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:V1 R:R:Y177 5.05 0 No Yes 0 4 0 1
L:L:V1 R:R:S186 8.08 0 No No 0 5 0 1
L:L:S3 R:R:W87 11.12 1 No No 0 6 0 1
L:L:S3 R:R:N106 5.96 1 No Yes 0 6 0 1
L:L:S3 R:R:F109 5.28 1 No No 0 6 0 1
L:L:E4 R:R:D176 5.2 1 No No 0 6 0 1
L:L:E4 R:R:Y177 6.73 1 No Yes 0 4 0 1
L:L:E4 R:R:Y183 7.86 1 No Yes 0 3 0 1
L:L:V5 R:R:Y91 6.31 0 No Yes 0 5 0 1
L:L:S6 R:R:Y91 5.09 0 No Yes 0 5 0 1
L:L:R9 R:R:P21 4.32 0 No No 0 4 0 1
L:L:R9 R:R:E23 9.3 0 No No 0 3 0 1
R:R:C22 R:R:C259 5.46 0 Yes No 9 7 1 2
R:R:C22 R:R:K262 6.47 0 Yes No 9 1 1 2
R:R:A26 R:R:N24 4.69 0 No No 4 3 2 1
R:R:E266 R:R:N24 14.46 0 No No 4 3 2 1
R:R:T34 R:R:Y91 11.24 0 No Yes 5 5 2 1
R:R:F109 R:R:F80 8.57 1 No Yes 6 7 1 2
R:R:F277 R:R:F80 8.57 1 Yes Yes 7 7 2 2
R:R:W87 R:R:W95 7.5 1 No Yes 6 9 1 2
R:R:N106 R:R:W87 3.39 1 Yes No 6 6 1 1
R:R:R273 R:R:Y91 4.12 0 Yes Yes 6 5 1 1
R:R:D164 R:R:N106 9.42 1 No Yes 4 6 2 1
R:R:H168 R:R:N106 11.48 1 No Yes 5 6 2 1
R:R:F109 R:R:F277 6.43 1 No Yes 6 7 1 2
R:R:D164 R:R:H168 7.56 1 No No 4 5 2 2
R:R:D164 R:R:Y177 10.34 1 No Yes 4 4 2 1
R:R:H168 R:R:Y177 9.8 1 No Yes 5 4 2 1
R:R:Y177 R:R:Y183 6.95 1 Yes Yes 4 3 1 1
R:R:L180 R:R:Y183 3.52 1 No Yes 1 3 2 1
R:R:L180 R:R:R252 3.64 1 No No 1 3 2 2
R:R:V187 R:R:Y183 5.05 0 No Yes 4 3 2 1
R:R:Q248 R:R:Y183 7.89 0 No Yes 5 3 2 1
R:R:T249 R:R:Y183 3.75 1 No Yes 4 3 2 1
R:R:R252 R:R:Y183 21.61 1 No Yes 3 3 2 1
R:R:L269 R:R:R273 4.86 0 No Yes 4 6 2 1
R:R:F277 R:R:R273 5.34 1 Yes Yes 7 6 2 1
R:R:C22 R:R:Q263 3.05 0 Yes No 9 4 1 2
L:L:S6 R:R:N24 2.98 0 No No 0 3 0 1
R:R:D176 R:R:S173 2.94 0 No No 6 5 1 1
L:L:C11 R:R:P21 1.88 0 No No 0 4 0 1
L:L:T10 R:R:C22 1.69 0 No Yes 0 9 0 1
L:L:G2 R:R:R273 1.5 0 No Yes 0 6 0 1
L:L:D7 R:R:S173 1.47 0 No No 0 5 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9AST_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.38
Number of Linked Nodes 265
Number of Links 290
Number of Hubs 36
Number of Links mediated by Hubs 141
Number of Communities 6
Number of Nodes involved in Communities 48
Number of Links involved in Communities 61
Path Summary
Number Of Nodes in MetaPath 94
Number Of Links MetaPath 93
Number of Shortest Paths 50279
Length Of Smallest Path 3
Average Path Length 13.3478
Length of Longest Path 32
Minimum Path Strength 1.22
Average Path Strength 5.86
Maximum Path Strength 20.985
Minimum Path Correlation 0.7
Average Path Correlation 0.923552
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 45.6442
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.6415
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainL
ProteinLymphotactin
UniProtP47992
Sequence
>9AST_nogp_Chain_L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainR
ProteinReceptor
UniProtP46094
Sequence
>9AST_nogp_Chain_R
PCENQAWVF ATLATTVLY CLVFLLSLV GNSLVLWVL VKYESLESL 
TNIFILNLC LSDLVFACL LPVWISPYH WGWVLGDFL CKLLNMIFS 
ISLYSSIFF LTIMTIHRY LSVVSPLST LRVPTLRCR VLVTMAVWV 
ASILSSILD TIFHKVLSS GCDYSELTW YLTSVYQHN LFFLLSLGI 
ILFCYVEIL RTLFRSRSK RRHRTVKLI FAIVVAYFL SWGPYNFTL 
FLQTLFRTQ IIRSCEAKQ QLEYALLIC RNLAFSHCC FNPVLYVFV 
GVKFRTHLK HVLR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IC0AProteinChemokineCXCR1Homo sapiensCXCL8-Gi1/β1/γ23.412023-07-19doi.org/10.1038/s41467-023-39799-2
8IC0 (No Gprot) AProteinChemokineCXCR1Homo sapiensCXCL8-3.412023-07-19doi.org/10.1038/s41467-023-39799-2
9ASTAProteinChemokineXCR1Homo sapiensLymphotactin-Gi1/β1/γ23.072024-12-11doi.org/10.1073/pnas.2405732121
9AST (No Gprot) AProteinChemokineXCR1Homo sapiensLymphotactin-3.072024-12-11doi.org/10.1073/pnas.2405732121




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9AST_nogp.zip



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