Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y139 7.275404
2R:R:Y146 4.54438
3R:R:L154 2.9325406
4R:R:L157 4.545409
5R:R:F167 4.2975406
6R:R:L181 8.0575409
7R:R:F182 3.98333608
8R:R:F185 5.254508
9R:R:R188 6.16408
10R:R:F222 6.71407
11R:R:Q223 6.652577
12R:R:Y224 5.765409
13R:R:F230 6.8775408
14R:R:F231 4.7925485
15R:R:W232 10.8409
16R:R:Y239 8.1375408
17R:R:Y241 5.08408
18R:R:P266 5.374589
19R:R:W286 13.394569
20R:R:F312 7.498529
21R:R:I347 5.1475428
22R:R:F350 7.00667629
23R:R:H353 10.17418
24R:R:Y354 10.32518
25R:R:I355 4.6375415
26R:R:F357 5.476516
27R:R:F360 6.248515
28R:R:K365 5.345412
29R:R:K369 6.0125418
30R:R:F372 4.765414
31R:R:E373 6.385417
32L:L:H1 7.33400
33L:L:D3 5.0025400
34L:L:F6 6.024530
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:F6 R:R:Y139 12.45456.19YesYes004
2L:L:F6 R:R:L374 19.33273.65YesNo307
3L:L:D3 R:R:L374 26.58795.43YesNo007
4L:L:D3 R:R:R188 63.57874.76YesYes008
5L:L:D3 R:R:F222 24.20234.78YesYes007
6R:R:F185 R:R:L157 29.55593.65YesYes089
7R:R:F185 R:R:N229 99.78598.46YesNo088
8R:R:N229 R:R:R188 1008.44NoYes088
9R:R:F182 R:R:L157 20.68188.53YesYes089
10R:R:F182 R:R:L181 24.69913.65YesYes089
11R:R:F185 R:R:L181 60.17828.53YesYes089
12R:R:F182 R:R:V384 16.3392.62YesNo089
13R:R:F185 R:R:V384 16.97292.62YesNo089
14R:R:C389 R:R:I163 35.06794.91NoNo098
15R:R:A160 R:R:C389 37.52623.61NoNo099
16R:R:A160 R:R:F182 39.9762.77NoYes098
17R:R:F167 R:R:I163 27.62862.51YesNo068
18R:R:F167 R:R:L170 17.76956.09YesNo069
19R:R:E394 R:R:L170 10.15896.63NoNo099
20R:R:W232 R:R:W263 11.388115.93YesNo098
21R:R:W263 R:R:Y224 18.85317.72NoYes089
22R:R:P266 R:R:Y224 22.93032.78YesYes099
23R:R:M227 R:R:P266 25.0766.71NoYes859
24R:R:I301 R:R:M227 34.33984.37NoNo075
25R:R:F230 R:R:I301 35.234910.05YesNo087
26R:R:F230 R:R:R188 49.07283.21YesYes088
27R:R:E236 R:R:L181 51.54415.9NoYes099
28R:R:E236 R:R:I177 12.51874.1NoNo099
29R:R:I177 R:R:Y239 11.40958.46NoYes098
30R:R:E236 R:R:L349 42.19455.3NoNo099
31R:R:F222 R:R:Q223 22.43788.2YesYes077
32L:L:H1 R:R:Q223 30.69518.65YesYes007
33L:L:D3 L:L:H1 25.81695.04YesYes000
34R:R:R277 R:R:W286 16.724523.99NoYes089
35R:R:R277 R:R:W273 32.759411NoNo088
36R:R:Q223 R:R:W273 33.76595.48YesNo778
37R:R:I297 R:R:Q223 15.99215.49NoYes777
38L:L:H1 R:R:V226 10.300212.45YesNo005
39R:R:F230 R:R:Y354 31.603110.32YesYes088
40R:R:F350 R:R:L349 37.05517.31YesNo099
41R:R:F350 R:R:L240 12.45026.09YesNo099
42R:R:L293 R:R:R277 14.97.29NoNo048
43R:R:I297 R:R:W294 14.93.52NoNo077
44R:R:F312 R:R:F350 22.83183.22YesYes299
45R:R:F312 R:R:I316 10.261710.05YesNo097
46R:R:F312 R:R:I347 11.32815.02YesYes298
47R:R:E373 R:R:Y354 19.78247.86YesYes178
48R:R:E373 R:R:F357 12.15045.83YesYes176
49R:R:F230 R:R:V226 10.93413.93YesNo085
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:K20 R:R:D132 6.91 0 No No 0 1 0 1
R:R:Q135 R:R:Y139 7.89 0 No Yes 3 4 1 1
L:L:Y13 R:R:Q135 19.16 0 No No 0 3 0 1
L:L:Y13 R:R:T136 7.49 0 No No 0 2 0 1
R:R:F138 R:R:V142 3.93 0 No No 5 5 2 1
L:L:F6 R:R:Y139 6.19 3 Yes Yes 0 4 0 1
L:L:S9 R:R:Y139 5.09 0 No Yes 0 4 0 1
L:L:Y10 R:R:Y139 9.93 0 No Yes 0 4 0 1
L:L:F6 R:R:V142 7.87 3 Yes No 0 5 0 1
R:R:K143 R:R:Y146 4.78 0 No Yes 5 8 2 1
R:R:L374 R:R:Y146 4.69 3 No Yes 7 8 1 1
L:L:F6 R:R:Y146 6.19 3 Yes Yes 0 8 0 1
R:R:R188 R:R:Y150 8.23 0 Yes No 8 8 1 2
R:R:V192 R:R:Y150 7.57 0 No No 7 8 2 2
R:R:N229 R:R:R188 8.44 0 No Yes 8 8 2 1
R:R:F230 R:R:R188 3.21 0 Yes Yes 8 8 2 1
L:L:D3 R:R:R188 4.76 0 Yes Yes 0 8 0 1
R:R:F222 R:R:V192 3.93 0 Yes No 7 7 1 2
R:R:K195 R:R:M219 8.64 0 No No 7 5 2 2
R:R:F222 R:R:K195 9.93 0 Yes No 7 7 1 2
L:L:Y10 R:R:L199 4.69 0 No No 0 7 0 1
R:R:M219 R:R:Q223 5.44 0 No Yes 5 7 2 1
R:R:F222 R:R:Q223 8.2 0 Yes Yes 7 7 1 1
L:L:D3 R:R:F222 4.78 0 Yes Yes 0 7 0 1
R:R:Q223 R:R:W273 5.48 7 Yes No 7 8 1 2
R:R:I297 R:R:Q223 5.49 7 No Yes 7 7 2 1
L:L:H1 R:R:Q223 8.65 0 Yes Yes 0 7 0 1
R:R:F230 R:R:V226 3.93 0 Yes No 8 5 2 1
L:L:H1 R:R:V226 12.45 0 Yes No 0 5 0 1
R:R:F230 R:R:Y354 10.32 0 Yes Yes 8 8 2 2
R:R:I297 R:R:W273 18.79 7 No No 7 8 2 2
L:L:T7 R:R:D287 5.78 0 No No 0 5 0 1
L:L:S11 R:R:D287 7.36 0 No No 0 5 0 1
L:L:D8 R:R:T288 5.78 0 No No 0 4 0 1
R:R:I289 R:R:W294 10.57 0 No No 8 7 1 2
L:L:D8 R:R:I289 7 0 No No 0 8 0 1
R:R:I297 R:R:W294 3.52 7 No No 7 7 2 2
R:R:E373 R:R:Y354 7.86 1 Yes Yes 7 8 1 2
R:R:F357 R:R:F360 7.5 1 Yes Yes 6 5 2 2
R:R:F357 R:R:K369 6.2 1 Yes Yes 6 8 2 1
R:R:F357 R:R:F372 5.36 1 Yes Yes 6 4 2 2
R:R:E373 R:R:F357 5.83 1 Yes Yes 7 6 1 2
R:R:F360 R:R:K369 4.96 1 Yes Yes 5 8 2 1
R:R:D362 R:R:K369 8.3 0 No Yes 4 8 1 1
L:L:I5 R:R:D362 12.59 0 No No 0 4 0 1
L:L:S2 R:R:K369 4.59 0 No Yes 0 8 0 1
L:L:F6 R:R:M370 6.22 3 Yes No 0 6 0 1
R:R:E373 R:R:F372 4.66 1 Yes Yes 7 4 1 2
L:L:S2 R:R:E373 7.19 0 No Yes 0 7 0 1
L:L:D3 R:R:L374 5.43 0 Yes No 0 7 0 1
L:L:F6 R:R:L374 3.65 3 Yes No 0 7 0 1
R:R:T147 R:R:Y146 2.5 0 No Yes 7 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6VN7_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.18
Number of Linked Nodes 258
Number of Links 267
Number of Hubs 34
Number of Links mediated by Hubs 123
Number of Communities 8
Number of Nodes involved in Communities 39
Number of Links involved in Communities 46
Path Summary
Number Of Nodes in MetaPath 50
Number Of Links MetaPath 49
Number of Shortest Paths 38534
Length Of Smallest Path 3
Average Path Length 12.9296
Length of Longest Path 29
Minimum Path Strength 0.97
Average Path Strength 6.49112
Maximum Path Strength 25.92
Minimum Path Correlation 0.7
Average Path Correlation 0.938855
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 56.9401
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.9611
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP32241
Sequence
>6VN7_nogp_Chain_R
ASLDEQQTM FYGSVKTGY TIGYGLSLA TLLVATAIL SLFRKLHCT 
RNYIHMHLF ISFILRAAA VFIKDLALF DSVGCKAAM VFFQYCVMA 
NFFWLLVEG LYLYTLLAV SFFSERKYF WGYILIGWG VPSTFTMVW 
TIARIHFED YGCWDTINS SLWWIIKGP ILTSILVNF ILFICIIRI 
LLQKLRPPP YSRLARSTL LLIPLFGVH YIMFAFFPD NFKPEVKMV 
FELVVGSFQ GFVVAILYC FLNGEVQAE LRRKWRRWH LQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainL
ProteinPACAP27
UniProtP18509
Sequence
>6VN7_nogp_Chain_L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6VN7B1PeptideVIP and PACAPVPAC1Homo sapiensPACAP27-Gs/β1/γ23.22020-09-02doi.org/10.1038/s41467-020-17933-8
6VN7 (No Gprot) B1PeptideVIP and PACAPVPAC1Homo sapiensPACAP27-3.22020-09-02doi.org/10.1038/s41467-020-17933-8
8E3YB1PeptideVIP and PACAPVPAC1Homo sapiensPACAP27-Gs/β1/γ22.32022-11-23doi.org/10.1038/s41467-022-34629-3
8E3Y (No Gprot) B1PeptideVIP and PACAPVPAC1Homo sapiensPACAP27-2.32022-11-23doi.org/10.1038/s41467-022-34629-3
8E3ZB1PeptideVIP and PACAPVPAC1Homo sapiensVIP-Gs/β1/γ22.72022-11-23doi.org/10.1038/s41467-022-34629-3
8E3Z (No Gprot) B1PeptideVIP and PACAPVPAC1Homo sapiensVIP-2.72022-11-23doi.org/10.1038/s41467-022-34629-3




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Download 6VN7_nogp.zip



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