Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:H1 7.42510
2L:L:D3 5.4775410
3L:L:F6 5.962510
4L:L:Y13 9.0425410
5R:R:Y39 7.742594
6R:R:K65 4.144103
7R:R:W67 8.916566
8R:R:D68 3.7925439
9R:R:T71 6.435435
10R:R:W73 13.4325439
11R:R:F93 7.904574
12R:R:R103 12.265438
13R:R:L113 6.385403
14R:R:E114 7.9875404
15R:R:Y118 8.1854117
16R:R:P119 5.97254115
17R:R:C122 4.5675489
18R:R:D126 5.56401
19R:R:K127 8.6473
20R:R:F138 4.4225405
21R:R:Y139 5.99667614
22R:R:K143 4.945415
23R:R:Y146 7.484518
24R:R:Y150 6.68143718
25R:R:F167 5.748546
26R:R:L170 5.395449
27R:R:R174 7.0175449
28R:R:N175 9.6525449
29R:R:I177 5.08429
30R:R:F185 10.0675408
31R:R:R188 8.066518
32R:R:K195 9.2075407
33R:R:L199 5.262517
34R:R:C215 4.585419
35R:R:F222 6.87667617
36R:R:Q223 6.66333617
37R:R:M227 5.708515
38R:R:F230 11.065418
39R:R:W232 12.2665129
40R:R:L234 4.63408
41R:R:E236 9.755409
42R:R:Y239 6.682528
43R:R:Y241 5.715408
44R:R:F255 5.2875406
45R:R:Y258 3.785427
46R:R:P266 6.0225419
47R:R:W273 6.86167618
48R:R:R277 12.56418
49R:R:E281 7.782516
50R:R:C285 5.3125419
51R:R:W286 12.496519
52R:R:L293 4.92414
53R:R:W294 10.25617
54R:R:I297 6.965417
55R:R:K298 9.27417
56R:R:F312 6.02559
57R:R:F350 6.2609
58R:R:H353 6.69518
59R:R:Y354 9.122518
60R:R:Q380 5.764519
61R:R:F382 7.525406
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:H1 R:R:V226 11.227512.45YesNo105
2R:R:R188 R:R:V226 25.94267.85YesNo185
3R:R:F230 R:R:R188 23.17686.41YesYes188
4R:R:F230 R:R:Y354 16.579816.5YesYes188
5L:L:D3 R:R:F222 25.17215.97YesYes107
6R:R:R188 R:R:Y150 41.55439.26YesYes188
7L:L:D3 R:R:L374 44.99645.43YesNo107
8L:L:F6 R:R:Y146 38.62898.25YesYes108
9L:L:F6 R:R:L374 44.60284.87YesNo107
10L:L:F6 R:R:Y139 77.48895.16YesYes104
11R:R:K195 R:R:L199 17.54025.64YesYes077
12R:R:Q223 R:R:W273 21.64195.48YesYes178
13R:R:Q135 R:R:Y139 70.48775.64NoYes134
14R:R:L131 R:R:Q135 70.13662.66NoNo023
15R:R:K127 R:R:L131 66.44387.05YesNo032
16R:R:F93 R:R:K127 62.34674.96YesYes743
17R:R:F93 R:R:L92 60.377213.4YesNo044
18R:R:L92 R:R:Y39 59.60528.21NoYes044
19R:R:I89 R:R:Y39 55.699610.88NoYes054
20L:L:L23 R:R:I89 48.46288.56NoNo005
21L:L:L23 R:R:F90 44.35213.65NoNo005
22R:R:C86 R:R:F90 27.19184.19NoNo895
23R:R:C86 R:R:P87 26.64163.77NoNo099
24R:R:P87 R:R:T71 25.76333.5NoYes095
25R:R:R103 R:R:T71 11.2299.06YesYes385
26R:R:C122 R:R:F90 16.3295.59YesNo895
27R:R:C122 R:R:S94 14.82153.44YesNo094
28R:R:D126 R:R:S94 10.20934.42YesNo014
29R:R:N229 R:R:R188 10012.05NoYes088
30R:R:F185 R:R:N229 80.475118.12YesNo088
31R:R:F185 R:R:G381 22.739.03YesNo089
32R:R:G381 R:R:V384 21.92763.68NoNo099
33R:R:F182 R:R:V384 21.12213.93NoNo089
34R:R:F182 R:R:L157 12.90066.09NoNo089
35R:R:F185 R:R:L181 73.1356.09YesNo089
36R:R:E236 R:R:L181 72.609214.58YesNo099
37R:R:E236 R:R:H178 30.342112.31YesNo099
38R:R:H178 R:R:R174 15.30483.39NoYes099
39R:R:N175 R:R:R174 12.762314.46YesYes499
40R:R:N229 R:R:S184 21.33037.45NoNo089
41R:R:S184 R:R:W232 20.57057.41NoYes099
42R:R:E236 R:R:I177 14.0866.83YesYes099
43R:R:L170 R:R:N175 11.42964.12YesYes499
44R:R:V235 R:R:W232 10.37497.36NoYes079
45R:R:H178 R:R:Y388 17.26064.36NoNo098
46R:R:E236 R:R:L349 39.16085.3YesNo099
47R:R:L349 R:R:Y388 17.546319.93NoNo098
48R:R:I301 R:R:M227 10.84758.75NoYes075
49R:R:F230 R:R:I301 11.677315.07YesNo087
50R:R:F350 R:R:L349 24.45637.31YesNo099
51R:R:L345 R:R:Y388 31.53962.34NoNo088
52R:R:L345 R:R:R341 29.99867.29NoNo088
53R:R:R338 R:R:R341 28.4478.53NoNo088
54R:R:R338 R:R:S342 25.33473.95NoNo089
55R:R:L319 R:R:S342 23.7743NoNo089
56R:R:L319 R:R:L339 22.21024.15NoNo088
57R:R:L339 R:R:Y336 20.64342.34NoNo086
58R:R:R324 R:R:Y336 11.17887.2NoNo066
59R:R:Y146 R:R:Y150 39.70186.95YesYes188
60R:R:F222 R:R:K195 18.348713.65YesYes077
61R:R:F222 R:R:Q223 21.94128.2YesYes177
62L:L:D3 R:R:R188 49.81234.76YesYes108
63R:R:F222 R:R:V226 14.3933.93YesNo175
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:H1 R:R:F222 4.53 1 Yes Yes 0 7 0 1
L:L:H1 R:R:Q223 7.42 1 Yes Yes 0 7 0 1
L:L:H1 R:R:V226 12.45 1 Yes No 0 5 0 1
L:L:H1 R:R:W294 9.52 1 Yes Yes 0 7 0 1
L:L:S2 R:R:E373 11.5 0 No No 0 7 0 1
L:L:D3 R:R:Y150 5.75 1 Yes Yes 0 8 0 1
L:L:D3 R:R:R188 4.76 1 Yes Yes 0 8 0 1
L:L:D3 R:R:F222 5.97 1 Yes Yes 0 7 0 1
L:L:D3 R:R:L374 5.43 1 Yes No 0 7 0 1
L:L:I5 R:R:D362 9.8 0 No No 0 4 0 1
L:L:F6 R:R:Y139 5.16 1 Yes Yes 0 4 0 1
L:L:F6 R:R:V142 6.55 1 Yes No 0 5 0 1
L:L:F6 R:R:Y146 8.25 1 Yes Yes 0 8 0 1
L:L:F6 R:R:M370 4.98 1 Yes No 0 6 0 1
L:L:F6 R:R:L374 4.87 1 Yes No 0 7 0 1
L:L:T7 R:R:K195 12.01 0 No Yes 0 7 0 1
L:L:D8 R:R:I289 8.4 0 No No 0 8 0 1
L:L:S9 R:R:Y139 5.09 0 No Yes 0 4 0 1
L:L:Y10 R:R:Y139 5.96 1 No Yes 0 4 0 1
L:L:Y10 R:R:F200 18.57 1 No No 0 4 0 1
L:L:S11 R:R:D287 7.36 0 No No 0 5 0 1
L:L:R12 R:R:T288 5.17 1 No No 0 4 0 1
L:L:R12 R:R:N290 6.03 1 No No 0 3 0 1
L:L:Y13 R:R:Q135 11.27 1 Yes No 0 3 0 1
L:L:Y13 R:R:T136 4.99 1 Yes No 0 2 0 1
L:L:Y13 R:R:Y139 7.94 1 Yes Yes 0 4 0 1
L:L:R14 R:R:F200 11.76 1 No No 0 4 0 1
L:L:R14 R:R:E204 4.65 1 No No 0 4 0 1
L:L:K15 R:R:C208 11.32 0 No No 0 4 0 1
L:L:Q16 R:R:F93 3.51 0 No Yes 0 4 0 1
L:L:A18 R:R:S205 3.42 0 No No 0 1 0 1
L:L:V19 R:R:F93 5.24 0 No Yes 0 4 0 1
L:L:K20 R:R:F93 12.41 7 No Yes 0 4 0 1
L:L:K20 R:R:K127 7.18 7 No Yes 0 3 0 1
L:L:Y22 R:R:V40 15.14 0 No No 0 3 0 1
L:L:L23 R:R:I89 8.56 0 No No 0 5 0 1
L:L:L23 R:R:F90 3.65 0 No No 0 5 0 1
R:R:C208 R:R:C37 5.46 0 No No 4 6 1 2
R:R:I89 R:R:Y39 10.88 0 No Yes 5 4 1 2
R:R:L92 R:R:Y39 8.21 0 No Yes 4 4 2 2
R:R:C86 R:R:F90 4.19 8 No No 9 5 2 1
R:R:C122 R:R:C86 7.28 8 Yes No 9 9 2 2
R:R:C122 R:R:F90 5.59 8 Yes No 9 5 2 1
R:R:F93 R:R:L92 13.4 7 Yes No 4 4 1 2
R:R:F93 R:R:K127 4.96 7 Yes Yes 4 3 1 1
R:R:K127 R:R:L131 7.05 7 Yes No 3 2 1 2
R:R:D132 R:R:K127 15.21 0 No Yes 1 3 2 1
R:R:Q135 R:R:Y139 5.64 1 No Yes 3 4 1 1
R:R:F138 R:R:Y139 6.19 0 Yes Yes 5 4 2 1
R:R:F138 R:R:V142 6.55 0 Yes No 5 5 2 1
R:R:K143 R:R:Y146 8.36 1 Yes Yes 5 8 2 1
R:R:D196 R:R:K143 8.3 1 No Yes 7 5 2 2
R:R:Y146 R:R:Y150 6.95 1 Yes Yes 8 8 1 1
R:R:D196 R:R:Y146 10.34 1 No Yes 7 8 2 1
R:R:L374 R:R:Y146 3.52 1 No Yes 7 8 1 1
R:R:R188 R:R:Y150 9.26 1 Yes Yes 8 8 1 1
R:R:A189 R:R:Y150 4 0 No Yes 7 8 2 1
R:R:V192 R:R:Y150 10.09 0 No Yes 7 8 2 1
R:R:S378 R:R:Y150 7.63 0 No Yes 9 8 2 1
R:R:R188 R:R:V226 7.85 1 Yes No 8 5 1 1
R:R:N229 R:R:R188 12.05 0 No Yes 8 8 2 1
R:R:F230 R:R:R188 6.41 1 Yes Yes 8 8 2 1
R:R:D196 R:R:K195 5.53 1 No Yes 7 7 2 1
R:R:K195 R:R:L199 5.64 0 Yes Yes 7 7 1 2
R:R:F222 R:R:K195 13.65 1 Yes Yes 7 7 1 1
R:R:F200 R:R:L199 7.31 1 No Yes 4 7 1 2
R:R:C285 R:R:L199 3.17 1 Yes Yes 9 7 2 2
R:R:D287 R:R:L199 5.43 1 No Yes 5 7 1 2
R:R:F222 R:R:M219 4.98 1 Yes No 7 5 1 2
R:R:M219 R:R:Q223 4.08 1 No Yes 5 7 2 1
R:R:F222 R:R:Q223 8.2 1 Yes Yes 7 7 1 1
R:R:F222 R:R:V226 3.93 1 Yes No 7 5 1 1
R:R:Q223 R:R:W273 5.48 1 Yes Yes 7 8 1 2
R:R:Q223 R:R:W294 6.57 1 Yes Yes 7 7 1 1
R:R:I297 R:R:Q223 8.23 1 Yes Yes 7 7 2 1
R:R:F230 R:R:Y354 16.5 1 Yes Yes 8 8 2 2
R:R:I297 R:R:W273 11.74 1 Yes Yes 7 8 2 2
R:R:E281 R:R:N290 5.26 1 Yes No 6 3 2 1
R:R:C285 R:R:D287 6.22 1 Yes No 9 5 2 1
R:R:N290 R:R:T288 4.39 1 No No 3 4 1 1
R:R:I289 R:R:W294 24.66 0 No Yes 8 7 1 1
R:R:I297 R:R:W294 3.52 1 Yes Yes 7 7 2 1
R:R:K298 R:R:W294 12.76 1 Yes Yes 7 7 2 1
R:R:D362 R:R:W294 4.47 1 No Yes 4 7 1 1
R:R:D362 R:R:K298 11.06 1 No Yes 4 7 1 2
R:R:E373 R:R:Y354 6.73 0 No Yes 7 8 1 2
R:R:E373 R:R:K369 10.8 0 No No 7 8 1 2
R:R:F193 R:R:Y150 3.09 0 No Yes 7 8 2 1
L:L:K20 R:R:L124 2.82 7 No No 0 3 0 1
R:R:L131 R:R:Q135 2.66 0 No No 2 3 2 1
R:R:S141 R:R:V142 1.62 0 No No 4 5 2 1
L:L:A24 R:R:L124 1.58 0 No No 0 3 0 1
R:R:I43 R:R:I89 1.47 0 No No 6 5 2 1
R:R:D206 R:R:S205 1.47 0 No No 1 1 2 1
R:R:E204 R:R:S205 1.44 0 No No 4 1 1 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8E3Y_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.15
Number of Linked Nodes 371
Number of Links 425
Number of Hubs 61
Number of Links mediated by Hubs 220
Number of Communities 13
Number of Nodes involved in Communities 100
Number of Links involved in Communities 134
Path Summary
Number Of Nodes in MetaPath 64
Number Of Links MetaPath 63
Number of Shortest Paths 119539
Length Of Smallest Path 3
Average Path Length 17.0421
Length of Longest Path 42
Minimum Path Strength 1.355
Average Path Strength 7.34498
Maximum Path Strength 22.58
Minimum Path Correlation 0.7
Average Path Correlation 0.963552
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 60.4553
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.6706
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainL
ProteinPACAP27
UniProtP18509
Sequence
>8E3Y_nogp_Chain_L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainR
ProteinReceptor
UniProtP32241
Sequence
>8E3Y_nogp_Chain_R
ECDYVQMIE VQHKQCLEE AQLENETIG CSKMWDNLT CWPATPRGQ 
VVVLACPLI FKLFSSIQG RNVSRSCTD EGWTHLEPG PYPIACGLD 
DKAASLDEQ QTMFYGSVK TGYTIGYGL SLATLLVAT AILSLFRKL 
HCTRNYIHM HLFISFILR AAAVFIKDL ALFDSGESD QCSEGSVGC 
KAAMVFFQY CVMANFFWL LVEGLYLYT LLAVSFFSE RKYFWGYIL 
IGWGVPSTF TMVWTIARI HFEDYGCWD TINSSLWWI IKGPILTSI 
LVNFILFIC IIRILLQKL RPPDIRKSD SSPYSRLAR STLLLIPLF 
GVHYIMFAF FPDNFKPEV KMVFELVVG SFQGFVVAI LYCFLNGEV 
QAELRRKWR RWH


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6VN7B1PeptideVIP and PACAPVPAC1Homo sapiensPACAP27-Gs/β1/γ23.22020-09-02doi.org/10.1038/s41467-020-17933-8
6VN7 (No Gprot) B1PeptideVIP and PACAPVPAC1Homo sapiensPACAP27-3.22020-09-02doi.org/10.1038/s41467-020-17933-8
8E3YB1PeptideVIP and PACAPVPAC1Homo sapiensPACAP27-Gs/β1/γ22.32022-11-23doi.org/10.1038/s41467-022-34629-3
8E3Y (No Gprot) B1PeptideVIP and PACAPVPAC1Homo sapiensPACAP27-2.32022-11-23doi.org/10.1038/s41467-022-34629-3
8E3ZB1PeptideVIP and PACAPVPAC1Homo sapiensVIP-Gs/β1/γ22.72022-11-23doi.org/10.1038/s41467-022-34629-3
8E3Z (No Gprot) B1PeptideVIP and PACAPVPAC1Homo sapiensVIP-2.72022-11-23doi.org/10.1038/s41467-022-34629-3




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8E3Y_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.