Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L268 2.8475409
2R:R:M280 4.878506
3R:R:L283 3.2125407
4R:R:Y290 6.778516
5R:R:L293 6.21414
6R:R:R297 5.608516
7R:R:F300 6.29143715
8R:R:H309 6.254508
9R:R:N320 7.555427
10R:R:F323 8.334529
11R:R:R341 5.295406
12R:R:F345 5.788528
13R:R:H346 9.7475409
14R:R:Y347 5.385437
15R:R:C351 5.1225437
16R:R:F353 5.476548
17R:R:W355 8.0375409
18R:R:H362 5.872507
19R:R:L365 4.7925406
20R:R:R369 3.9075406
21R:R:Y378 7.445406
22R:R:W387 6.5125439
23R:R:P390 3.978539
24R:R:Y403 5.42709
25R:R:E418 6.3075453
26R:R:W421 7.814528
27R:R:F422 10.8875427
28R:R:H436 6.53546
29R:R:Y438 5.204508
30R:R:F439 6.445446
31R:R:W490 5.8625409
32R:R:I494 5.425445
33R:R:L498 3.18404
34R:R:Y525 9.926516
35L:L:?4 5.57571720
36H:H:?1 5.45889900
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:Q273 R:R:T269 10.475.67NoNo046
2R:R:T269 R:R:V327 13.04544.76NoNo065
3R:R:L268 R:R:S416 14.67393YesNo092
4R:R:I271 R:R:V503 18.14326.14NoNo086
5R:R:S272 R:R:V503 20.66551.62NoNo086
6R:R:F323 R:R:S272 23.17025.28YesNo098
7L:L:?4 R:R:F323 32.17114.36YesYes209
8L:L:?4 R:R:L498 43.76492.88YesYes004
9R:R:L268 R:R:L498 21.72762.77YesYes094
10R:R:C276 R:R:F323 11.78875.59NoYes079
11R:R:N320 R:R:N510 13.027712.26YesNo279
12L:L:?4 R:R:N510 30.94086.67YesNo209
13R:R:A507 R:R:I271 13.04541.62NoNo068
14R:R:A507 R:R:G275 10.471.95NoNo068
15R:R:N510 R:R:S279 16.06345.96NoNo299
16R:R:G514 R:R:S279 15.36423.71NoNo099
17R:R:M280 R:R:N320 14.34644.21YesYes067
18R:R:C518 R:R:T286 11.80643.38NoNo088
19R:R:F521 R:R:T286 14.11636.49NoNo078
20R:R:F521 R:R:Y525 22.276310.32NoYes076
21R:R:H309 R:R:Y525 58.80175.44YesYes086
22H:H:?1 R:R:H309 62.83745.64YesYes008
23H:H:?1 R:R:M356 73.59944.96YesNo009
24R:R:M356 R:R:W490 73.66145.82NoYes099
25L:L:?4 R:R:W490 1003.95YesYes009
26R:R:G514 R:R:L283 13.24013.42NoYes097
27R:R:F300 R:R:L293 11.363812.18YesYes154
28R:R:F300 R:R:Y525 31.63115.16YesYes156
29R:R:F300 R:R:Y290 11.72674.13YesYes156
30R:R:F521 R:R:Y290 10.27524.13NoYes076
31R:R:K307 R:R:Y290 10.47884.78NoYes166
32R:R:H362 R:R:Y378 40.13637.62YesYes076
33H:H:?1 R:R:H362 39.60534.51YesYes007
34R:R:S383 R:R:W387 10.65584.94NoYes059
35R:R:P390 R:R:T354 19.82485.25YesNo096
36R:R:T354 R:R:Y438 30.78157.49NoYes068
37R:R:F353 R:R:Y438 24.92264.13YesYes088
38R:R:F353 R:R:W490 27.99366.01YesYes089
39R:R:G386 R:R:T354 11.7093.64NoNo076
40R:R:V394 R:R:Y347 10.41693.79NoYes097
41R:R:V394 R:R:Y403 11.01875.05NoYes099
42R:R:H346 R:R:Y403 22.08169.8YesYes099
43R:R:F422 R:R:H346 23.975614.71YesYes079
44R:R:F422 R:R:W421 26.444815.03YesYes278
45L:L:?4 R:R:W421 24.32073.95YesYes208
46L:L:?4 R:R:F345 28.34763.38YesYes208
47R:R:F345 R:R:N326 36.15368.46YesNo086
48R:R:N326 R:R:R341 32.38346.03NoYes066
49R:R:E418 R:R:L405 15.60325.3YesNo034
50R:R:C338 R:R:L405 17.76261.59NoNo094
51R:R:C338 R:R:C420 19.90447.28NoNo099
52R:R:C420 R:R:R341 22.02858.36NoYes096
53R:R:H346 R:R:L350 20.13459YesNo099
54R:R:L350 R:R:Y438 20.71865.86NoYes098
55R:R:H346 R:R:T434 14.14285.48YesNo097
56R:R:L365 R:R:Y378 34.83494.69YesYes066
57H:H:?1 R:R:L363 29.73718.49YesNo008
58R:R:L365 R:R:Y364 16.53243.52YesNo068
59R:R:S416 R:R:T264 10.56736.4NoNo025
60R:R:I433 R:R:T434 12.29313.04NoNo057
61R:R:T442 R:R:Y438 28.27683.75NoYes078
62H:H:?1 R:R:T442 28.94953.88YesNo007
63H:H:?1 R:R:F443 12.73563.2YesNo007
64R:R:I457 R:R:V476 18.82479.22NoNo075
65R:R:V453 R:R:V476 22.58613.21NoNo075
66R:R:L363 R:R:V453 26.28552.98NoNo087
67R:R:F458 R:R:I457 10.62042.51NoNo037
68R:R:I505 R:R:T502 10.45231.52NoNo077
69R:R:F506 R:R:T502 14.55885.19NoNo097
70R:R:F506 R:R:L498 20.59473.65NoYes094
71R:R:F323 R:R:V327 17.74497.87YesNo095
72R:R:F345 R:R:W421 11.00987.02YesYes288
73R:R:F323 R:R:F345 10.54968.57YesYes298
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F323 R:R:S272 5.28 2 Yes No 9 8 1 2
R:R:C276 R:R:N320 6.3 0 No Yes 7 7 2 2
R:R:C276 R:R:F323 5.59 0 No Yes 7 9 2 1
R:R:N320 R:R:S279 7.45 2 Yes No 7 9 2 2
R:R:N510 R:R:S279 5.96 2 No No 9 9 1 2
R:R:L319 R:R:L349 4.15 0 No No 8 7 1 2
L:L:?4 R:R:L319 3.84 2 Yes No 0 8 0 1
R:R:N320 R:R:N510 12.26 2 Yes No 7 9 2 1
R:R:F323 R:R:V327 7.87 2 Yes No 9 5 1 2
R:R:F323 R:R:F345 8.57 2 Yes Yes 9 8 1 1
L:L:?4 R:R:F323 14.36 2 Yes Yes 0 9 0 1
R:R:F345 R:R:N326 8.46 2 Yes No 8 6 1 2
R:R:F345 R:R:W421 7.02 2 Yes Yes 8 8 1 1
L:L:?4 R:R:F345 3.38 2 Yes Yes 0 8 0 1
R:R:F353 R:R:L349 3.65 4 Yes No 8 7 2 2
R:R:F353 R:R:W490 6.01 4 Yes Yes 8 9 2 1
R:R:M356 R:R:W490 5.82 0 No Yes 9 9 2 1
R:R:W421 R:R:Y406 9.65 2 Yes No 8 2 1 2
R:R:F422 R:R:W421 15.03 2 Yes Yes 7 8 2 1
R:R:L431 R:R:W421 3.42 2 No Yes 6 8 2 1
L:L:?4 R:R:W421 3.95 2 Yes Yes 0 8 0 1
R:R:F422 R:R:L431 8.53 2 Yes No 7 6 2 2
R:R:Q513 R:R:W490 7.67 0 No Yes 9 9 2 1
L:L:?4 R:R:W490 3.95 2 Yes Yes 0 9 0 1
R:R:G499 R:R:L498 3.42 0 No Yes 5 4 2 1
R:R:F506 R:R:L498 3.65 0 No Yes 9 4 2 1
L:L:?4 R:R:N510 6.67 2 Yes No 0 9 0 1
L:L:?4 R:R:L498 2.88 2 Yes Yes 0 4 0 1
R:R:L268 R:R:L498 2.77 0 Yes Yes 9 4 2 1
R:R:F345 R:R:G342 1.51 2 Yes No 8 9 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7D77_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.38
Number of Linked Nodes 243
Number of Links 268
Number of Hubs 36
Number of Links mediated by Hubs 137
Number of Communities 5
Number of Nodes involved in Communities 32
Number of Links involved in Communities 42
Path Summary
Number Of Nodes in MetaPath 74
Number Of Links MetaPath 73
Number of Shortest Paths 30521
Length Of Smallest Path 3
Average Path Length 9.98427
Length of Longest Path 22
Minimum Path Strength 1.42
Average Path Strength 5.59773
Maximum Path Strength 14.87
Minimum Path Correlation 0.7
Average Path Correlation 0.91887
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.55556
Average % Of Corr. Nodes 51.9143
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.9477
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHCY
PDB ResiduesL:L:?4
Environment DetailsOpen EMBL-EBI Page
CodeHCY
NameHydrocortisone
Synonyms11beta,17alpha,21-Trihydroxy-4-pregnene-3,20-dione
Identifier
FormulaC21 H30 O5
Molecular Weight362.46
SMILES
PubChem5754
Formal Charge0
Total Atoms56
Total Chiral Atoms7
Total Bonds59
Total Aromatic Bonds0

CodePLM
PDB ResiduesH:H:?1
Environment DetailsOpen EMBL-EBI Page
CodePLM
NamePalmitic Acid
SynonymsHexaectylic acid
Identifier
FormulaC16 H32 O2
Molecular Weight256.424
SMILES
PubChem985
Formal Charge0
Total Atoms50
Total Chiral Atoms0
Total Bonds49
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ86Y34
Sequence
>7D77_nogp_Chain_R
STVHILTRI SQAGCGVSM IFLAFTIIL YAFLRLSRE RFKSEDAPK 
IHVALGGSL FLLNLAFLV NVGSGSKGS DAACWARGA VFHYFLLCA 
FTWMGLEAF HLYLLAVRV FNTYFGHYF LKLSLVGWG LPALMVIGT 
GSANSYGLY TIRDRENRT SLELCWFRE GTTMYALYI TVHGYFLIT 
FLFGMVVLA LVVWKIFTL SRATAVKER GKNRKKVLT LLGLSSLVG 
VTWGLAIFT PLGLSTVYI FALFNSLQG VFICCWFTI LYLP


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7D76B2AdhesionAdhesionADGRG3Homo sapiensBeclomethasone-Go/β1/γ23.12021-02-03doi.org/10.1038/s41586-020-03083-w
7D76 (No Gprot) B2AdhesionAdhesionADGRG3Homo sapiensBeclomethasone-3.12021-02-03doi.org/10.1038/s41586-020-03083-w
7D77B2AdhesionAdhesionADGRG3Homo sapiensHydrocortisone-Go/β1/γ22.92021-02-03doi.org/10.1038/s41586-020-03083-w
7D77 (No Gprot) B2AdhesionAdhesionADGRG3Homo sapiensHydrocortisone-2.92021-02-03doi.org/10.1038/s41586-020-03083-w




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Download 7D77_nogp.zip



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