Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:N72 5.9409
2R:R:D100 6.182509
3R:R:M108 4.128518
4R:R:W121 5.45833637
5R:R:L123 3.5375436
6R:R:D135 8.93418
7R:R:F138 5.2425406
8R:R:H145 5.955628
9R:R:R169 4.555404
10R:R:W180 4.082529
11R:R:N201 4.52402
12R:R:K211 3.1025405
13R:R:R213 5.875403
14R:R:F226 6.99618
15R:R:Y237 7.4625409
16R:R:F340 7.3475417
17R:R:F341 8.89417
18R:R:W367 4.596517
19R:R:Y370 5.818518
20R:R:Y380 5.765449
21R:R:F387 7.024509
22R:R:I395 4.25406
23L:L:?1 9.13571710
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:V366 R:R:Y370 34.24856.31NoYes168
2R:R:F340 R:R:V366 32.20013.93YesNo176
3R:R:F340 R:R:F341 93.14545.36YesYes177
4R:R:F226 R:R:F341 93.120918.22YesYes187
5R:R:F226 R:R:F333 99.59033.22YesNo089
6R:R:F333 R:R:I143 1003.77NoNo098
7R:R:I143 R:R:P229 99.92663.39NoNo089
8R:R:P229 R:R:W144 99.74328.11NoNo096
9R:R:I182 R:R:W144 99.633110.57NoNo056
10R:R:I182 R:R:I186 99.37632.94NoNo056
11R:R:I186 R:R:T140 99.07063.04NoNo067
12R:R:S183 R:R:T140 98.71596.4NoNo087
13R:R:A141 R:R:S183 87.73393.42NoNo088
14R:R:A141 R:R:H145 83.56372.93NoYes288
15R:R:H145 R:R:L96 83.22739YesNo089
16R:R:D100 R:R:L96 82.81774.07YesNo099
17R:R:D100 R:R:N72 59.02534.04YesYes099
18R:R:L137 R:R:S183 12.263NoNo068
19R:R:F138 R:R:L137 10.42563.65YesNo066
20R:R:N72 R:R:P377 51.85899.77YesNo099
21R:R:A78 R:R:F391 10.73742.77NoNo087
22R:R:A78 R:R:F387 12.22332.77NoYes089
23R:R:F387 R:R:T381 42.6449.08YesNo097
24R:R:L382 R:R:T381 46.20282.95NoNo067
25R:R:L378 R:R:L382 49.63312.77NoNo066
26R:R:L378 R:R:P377 50.75213.28NoNo069
27R:R:F387 R:R:N90 20.61886.04YesNo099
28R:R:N90 R:R:Y87 17.9115.12NoNo097
29R:R:T89 R:R:Y87 16.4732.5NoNo087
30R:R:N167 R:R:T89 15.01771.46NoNo078
31R:R:A88 R:R:N167 12.21724.69NoNo067
32R:R:A88 R:R:R169 10.73741.38NoYes064
33R:R:D100 R:R:N376 50.76438.08YesNo099
34R:R:V107 R:R:Y370 19.6713.79NoYes178
35R:R:V107 R:R:W131 39.89246.13NoNo076
36R:R:L113 R:R:L123 12.07041.38NoYes056
37R:R:L123 R:R:W121 21.60334.56YesYes367
38R:R:W121 R:R:W131 35.48374.69YesNo076
39R:R:N201 R:R:P202 14.79151.63YesNo023
40R:R:I205 R:R:P202 17.60431.69NoNo023
41R:R:I195 R:R:I205 20.33751.47NoNo052
42R:R:I195 R:R:L132 21.5362.85NoNo055
43R:R:L132 R:R:V190 31.75374.47NoNo056
44R:R:F217 R:R:V190 36.62713.93NoNo076
45L:L:?1 R:R:F217 38.90792.86YesNo007
46L:L:?1 R:R:D135 26.433918.04YesYes108
47R:R:L146 R:R:N376 46.2154.12NoNo099
48R:R:L146 R:R:Y380 45.01658.21NoYes099
49R:R:F333 R:R:M233 19.14528.71NoNo098
50R:R:R153 R:R:Y380 37.57496.17NoYes499
51R:R:L326 R:R:R153 36.60274.86NoNo089
52R:R:L326 R:R:T240 35.47141.47NoNo089
53R:R:T240 R:R:Y154 34.19966.24NoNo098
54R:R:K158 R:R:Y154 30.29237.17NoNo078
55R:R:A243 R:R:I157 19.33471.62NoNo069
56R:R:A243 R:R:K158 20.74721.61NoNo067
57R:R:I157 R:R:L244 17.917.14NoNo098
58R:R:L132 R:R:L209 10.27275.54NoNo055
59R:R:C338 R:R:F226 21.94574.19NoYes068
60R:R:C338 R:R:I342 19.2431.64NoNo066
61R:R:I342 R:R:T346 17.82441.52NoNo065
62R:R:C353 R:R:T346 13.38511.69NoNo645
63R:R:C353 R:R:L358 12.02761.59NoNo044
64R:R:F330 R:R:M233 10.68243.73NoNo088
65R:R:E319 R:R:L244 15.15845.3NoNo088
66R:R:E319 R:R:K247 12.21114.05NoNo087
67R:R:K247 R:R:S317 10.73137.65NoNo074
68L:L:?1 R:R:F340 58.737915.23YesYes107
69R:R:D135 R:R:V107 22.4962.92YesNo187
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:D135 R:R:V107 2.92 1 Yes No 8 7 1 2
R:R:V107 R:R:Y370 3.79 1 No Yes 7 8 2 2
R:R:D135 R:R:S139 4.42 1 Yes No 8 7 1 1
R:R:D135 R:R:Y370 10.34 1 Yes Yes 8 8 1 2
L:L:?1 R:R:D135 18.04 1 Yes Yes 0 8 0 1
R:R:A187 R:R:V136 3.39 0 No No 8 7 2 1
L:L:?1 R:R:V136 15.14 1 Yes No 0 7 0 1
L:L:?1 R:R:S139 5.87 1 Yes No 0 7 0 1
R:R:F217 R:R:V190 3.93 0 No No 7 6 1 2
R:R:F217 R:R:G221 3.01 0 No No 7 6 1 2
L:L:?1 R:R:F217 2.86 1 Yes No 0 7 0 1
R:R:M218 R:R:N344 7.01 0 No No 6 6 2 1
R:R:F340 R:R:F341 5.36 1 Yes Yes 7 7 1 2
R:R:F340 R:R:L362 4.87 1 Yes No 7 5 1 2
R:R:F340 R:R:V366 3.93 1 Yes No 7 6 1 1
L:L:?1 R:R:F340 15.23 1 Yes Yes 0 7 0 1
R:R:V366 R:R:Y370 6.31 1 No Yes 6 8 1 2
L:L:?1 R:R:V366 4.66 1 Yes No 0 6 0 1
L:L:?1 R:R:N344 2.15 1 Yes No 0 6 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7SRR_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.85
Number of Linked Nodes 255
Number of Links 263
Number of Hubs 23
Number of Links mediated by Hubs 96
Number of Communities 6
Number of Nodes involved in Communities 31
Number of Links involved in Communities 39
Path Summary
Number Of Nodes in MetaPath 70
Number Of Links MetaPath 69
Number of Shortest Paths 31485
Length Of Smallest Path 3
Average Path Length 18.4435
Length of Longest Path 45
Minimum Path Strength 1.3
Average Path Strength 5.54714
Maximum Path Strength 16.635
Minimum Path Correlation 0.7
Average Path Correlation 0.930553
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.7027
Average % Of Corr. Nodes 52.0154
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 27.1343
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code7LD
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code7LD
NameLysergic acid diethylamide
SynonymsN,N-diethyllysergamide
Identifier
FormulaC20 H25 N3 O
Molecular Weight323.432
SMILES
PubChem5761
Formal Charge0
Total Atoms49
Total Chiral Atoms2
Total Bonds52
Total Aromatic Bonds10

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP41595
Sequence
>7SRR_nogp_Chain_R
WAALLILMV IIPTIGGNT LVILAVSLE KKLQYATNY FLMSLAVAD 
LLVGLFVMP IALLTIMFE AMWPLPLVL CPAWLFLDV LFSTASIWH 
LCAISVDRY IAIKKPIQA NQYNSRATA FIKITVVWL ISIGIAIPV 
PIKGIETDV DNPNNITCV LTKERFGDF MLFGSLAAF FTPLAIMIV 
TYFLTIHAL QKKATISNE QRASKVLGI VFFLFLLMW CPFFITNIT 
LVLCDSCNQ TTLQMLLEI FVWIGYVSS GVNPLVYTL FNKTFRDAF 
GRYI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7SRQAAmine5-Hydroxytryptamine5-HT2BHomo sapiensLSD--2.72022-09-2110.1016/j.neuron.2022.08.006
7SRSAAmine5-Hydroxytryptamine5-HT2BHomo sapiensLSD-Arrestin23.32022-09-2110.1016/j.neuron.2022.08.006
7SRRAAmine5-Hydroxytryptamine5-HT2BHomo sapiensLSD-chim(NtGi2L-Gs-CtGq)/β1/γ22.92022-09-2110.1016/j.neuron.2022.08.006
7SRR (No Gprot) AAmine5-Hydroxytryptamine5-HT2BHomo sapiensLSD-2.92022-09-2110.1016/j.neuron.2022.08.006
6DS0AAmine5-Hydroxytryptamine5-HT2BHomo sapiensLy266097--3.192018-08-2910.1038/s41594-018-0116-7
6DRZAAmine5-Hydroxytryptamine5-HT2BHomo sapiensMethysergide--3.12018-08-2910.1038/s41594-018-0116-7
6DRYAAmine5-Hydroxytryptamine5-HT2BHomo sapiensMethylergonovine--2.922018-08-2910.1038/s41594-018-0116-7
6DRXAAmine5-Hydroxytryptamine5-HT2BHomo sapiensLisuride--3.12018-08-2910.1038/s41594-018-0116-7
5TUDAAmine5-Hydroxytryptamine5-HT2BHomo sapiensErgotamine--32017-07-2610.1073/pnas.1700891114
5TVNAAmine5-Hydroxytryptamine5-HT2BHomo sapiensLSD--2.92017-02-0110.1016/j.cell.2016.12.033
4NC3AAmine5-Hydroxytryptamine5-HT2BHomo sapiensErgotamine--2.82013-12-1810.1126/science.1244142
4IB4AAmine5-Hydroxytryptamine5-HT2BHomo sapiensErgotamine--2.72013-03-1310.1126/science.1232808




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Download 7SRR_nogp.zip



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