Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:N36 6.865469
2R:R:F38 4.3925446
3R:R:I43 4.93407
4R:R:V57 2.7075407
5R:R:L60 4.618559
6R:R:D64 6.18569
7R:R:L78 4.67403
8R:R:W83 7.528528
9R:R:F85 5.485427
10R:R:H94 7.5075406
11R:R:V99 4.645485
12R:R:Y102 4.628517
13R:R:M165 2.695473
14R:R:F169 4.4433
15R:R:Y172 12.645434
16R:R:H181 6.695435
17R:R:T188 4.4125415
18R:R:F190 5.172518
19R:R:P193 4.295419
20R:R:F194 4.6225416
21R:R:Y201 5.87408
22R:R:R207 5.895495
23R:R:W234 4.635619
24R:R:Y237 7.8925406
25R:R:H238 4.142508
26R:R:E244 2.8825103
27R:R:R247 6.825402
28R:R:L284 2.855408
29R:R:Y285 5.244559
30R:R:F287 3.7175447
31R:R:G290 2.6075404
32R:R:R294 5.23546
33L:L:?1 6.591821110
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L24 R:R:V269 10.55341.49NoNo056
2L:L:?1 R:R:L78 10.685711.18YesYes003
3L:L:?1 R:R:F275 1003.03YesNo006
4R:R:F275 R:R:L25 29.09954.87NoNo067
5R:R:A272 R:R:L25 18.0873.15NoNo047
6R:R:A272 R:R:L24 15.86893.15NoNo045
7R:R:G32 R:R:S279 15.17633.71NoNo087
8R:R:G32 R:R:N36 19.45681.7NoYes089
9R:R:D64 R:R:S278 81.3765.89YesNo099
10R:R:S278 R:R:V67 81.90526.46NoNo096
11R:R:F275 R:R:V67 84.33342.62NoNo066
12R:R:D64 R:R:P282 63.99723.22YesNo699
13R:R:F287 R:R:F38 11.81414.29YesYes476
14R:R:F287 R:R:V39 63.01662.62YesNo078
15R:R:P282 R:R:V39 69.56181.77NoNo098
16R:R:F287 R:R:R294 48.20615.34YesYes476
17R:R:R46 R:R:S42 13.02052.64NoNo057
18R:R:A54 R:R:I43 12.74033.25NoYes077
19R:R:I43 R:R:R294 27.09166.26YesYes076
20R:R:I43 R:R:V57 13.54973.07YesYes077
21R:R:L293 R:R:R294 13.68986.07NoYes076
22R:R:L293 R:R:V57 11.65074.47NoYes077
23R:R:T53 R:R:V57 16.49161.59NoYes077
24R:R:R129 R:R:T53 12.26553.88NoNo077
25R:R:D64 R:R:N281 43.42756.73YesNo099
26R:R:L60 R:R:N281 41.91776.87YesNo099
27L:L:?1 R:R:Y102 62.3554.37YesYes107
28R:R:S145 R:R:Y102 41.93322.54NoYes087
29R:R:A103 R:R:S145 32.45393.42NoNo068
30R:R:A103 R:R:W142 30.86625.19NoNo069
31R:R:N59 R:R:W142 27.76874.52NoNo099
32R:R:L138 R:R:N59 26.30558.24NoNo079
33R:R:L60 R:R:Y285 29.71443.52YesYes599
34R:R:F85 R:R:W83 22.92015.01YesYes278
35R:R:C90 R:R:W83 31.90139.14NoYes298
36R:R:C90 R:R:H94 49.29574.42NoYes096
37R:R:F74 R:R:H94 47.66916.79NoYes066
38L:L:?1 R:R:F74 48.96118.93YesNo006
39R:R:H94 R:R:V152 47.8874.15YesNo064
40L:L:?1 R:R:V152 49.14782.78YesNo004
41R:R:H94 R:R:R156 46.493914.67YesNo065
42R:R:F169 R:R:R156 38.84354.28YesNo335
43R:R:F169 R:R:L167 27.94772.44YesNo033
44R:R:L167 R:R:W161 23.8544.56NoNo032
45R:R:M165 R:R:W161 17.07533.49YesNo732
46R:R:C168 R:R:C90 14.37477.28NoNo299
47R:R:C168 R:R:V158 11.31613.42NoNo094
48R:R:S145 R:R:V99 10.8884.85NoYes085
49L:L:?1 R:R:W234 69.32063.54YesYes109
50R:R:W106 R:R:Y102 15.19181.93NoYes157
51R:R:R115 R:R:Y285 11.7138.23NoYes099
52R:R:R115 R:R:Y201 10.37437.2NoYes098
53R:R:S112 R:R:Y201 31.96363.82NoYes098
54R:R:I226 R:R:Y285 22.22744.84NoYes079
55R:R:I226 R:R:Y201 29.32523.63NoYes078
56R:R:S277 R:R:W234 49.54477.41NoYes099
57R:R:F233 R:R:S277 47.98045.28NoNo079
58R:R:F233 R:R:T229 45.56772.59NoNo076
59R:R:L284 R:R:T229 44.74282.95YesNo086
60R:R:I226 R:R:L284 33.97155.71NoYes078
61R:R:S112 R:R:S200 26.23553.26NoNo096
62R:R:S116 R:R:S200 23.34816.52NoNo086
63R:R:I204 R:R:S116 20.44523.1NoNo088
64R:R:L138 R:R:L55 25.09921.38NoNo076
65R:R:K131 R:R:L55 23.62831.41NoNo046
66R:R:K131 R:R:T130 19.63581.5NoNo046
67R:R:M133 R:R:T130 17.48771.51NoNo036
68R:R:L128 R:R:M133 15.32421.41NoNo043
69R:R:L128 R:R:V124 11.19931.49NoNo045
70L:L:?1 R:R:E185 41.70758.24YesNo005
71R:R:E185 R:R:H181 26.27447.39NoYes055
72R:R:H181 R:R:Y172 16.76411.98YesYes354
73R:R:F169 R:R:V159 13.84546.55YesNo033
74R:R:R178 R:R:Y172 12.242213.38NoYes044
75R:R:E185 R:R:N241 25.88532.63NoNo056
76R:R:L182 R:R:N241 23.43372.75NoNo046
77R:R:E244 R:R:L182 17.19982.65YesNo034
78R:R:E244 R:R:R267 18.30493.49YesNo1034
79R:R:R267 R:R:Y237 24.38326.17NoYes046
80R:R:I271 R:R:Y237 19.61244.84NoYes056
81L:L:?1 R:R:I271 21.27796.21YesNo005
82R:R:H238 R:R:W234 23.30143.17YesYes089
83R:R:F190 R:R:F230 10.0634.29YesNo189
84R:R:F230 R:R:W234 19.61245.01NoYes199
85R:R:F190 R:R:H238 11.92319.05YesYes088
86R:R:F190 R:R:L235 12.93493.65YesNo086
87R:R:I204 R:R:L208 14.59262.85NoNo088
88R:R:L208 R:R:R215 11.63512.43NoNo085
89R:R:L222 R:R:L284 23.34031.38NoYes078
90R:R:G290 R:R:L222 19.31671.71YesNo047
91R:R:E244 R:R:L263 29.27083.98YesNo035
92R:R:L263 R:R:R247 22.87342.43NoYes052
93R:R:L55 R:R:R50 14.49922.43NoNo066
94R:R:D64 R:R:N36 22.7812.12YesYes699
95R:R:A54 R:R:R50 13.76761.38NoNo076
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:A21 R:R:L78 3.15 0 No Yes 5 3 2 1
R:R:I22 R:R:L78 2.85 0 No Yes 5 3 2 1
R:R:F275 R:R:L25 4.87 0 No No 6 7 1 2
R:R:F275 R:R:V67 2.62 0 No No 6 6 1 2
R:R:F74 R:R:H94 6.79 0 No Yes 6 6 1 2
L:L:?1 R:R:F74 18.93 1 Yes No 0 6 0 1
L:L:?1 R:R:L78 11.18 1 Yes Yes 0 3 0 1
R:R:H94 R:R:V152 4.15 0 Yes No 6 4 2 1
R:R:M101 R:R:W234 3.49 1 No Yes 7 9 1 1
L:L:?1 R:R:M101 5.27 1 Yes No 0 7 0 1
R:R:S145 R:R:Y102 2.54 0 No Yes 8 7 2 1
R:R:L148 R:R:Y102 10.55 1 No Yes 4 7 2 1
R:R:T188 R:R:Y102 3.75 1 Yes Yes 5 7 2 1
L:L:?1 R:R:Y102 4.37 1 Yes Yes 0 7 0 1
R:R:L148 R:R:T188 2.95 1 No Yes 4 5 2 2
L:L:?1 R:R:V152 2.78 1 Yes No 0 4 0 1
R:R:E185 R:R:H181 7.39 0 No Yes 5 5 1 2
R:R:E185 R:R:N241 2.63 0 No No 5 6 1 2
L:L:?1 R:R:E185 8.24 1 Yes No 0 5 0 1
R:R:F230 R:R:W234 5.01 1 No Yes 9 9 2 1
R:R:H238 R:R:W234 3.17 0 Yes Yes 8 9 2 1
R:R:A274 R:R:W234 5.19 0 No Yes 8 9 2 1
R:R:S277 R:R:W234 7.41 0 No Yes 9 9 2 1
L:L:?1 R:R:W234 3.54 1 Yes Yes 0 9 0 1
R:R:H238 R:R:Y237 5.44 0 Yes Yes 8 6 2 2
R:R:N241 R:R:Y237 15.12 0 No Yes 6 6 2 2
R:R:I271 R:R:Y237 4.84 0 No Yes 5 6 1 2
L:L:?1 R:R:N268 6.83 1 Yes No 0 4 0 1
L:L:?1 R:R:I271 6.21 1 Yes No 0 5 0 1
L:L:?1 R:R:F275 3.03 1 Yes No 0 6 0 1
L:L:?1 R:R:G98 2.13 1 Yes No 0 4 0 1
R:R:C97 R:R:G98 1.96 0 No No 6 4 2 1
R:R:W106 R:R:Y102 1.93 1 No Yes 5 7 2 1
R:R:L78 R:R:S18 1.5 0 Yes No 3 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7VKT_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.54
Number of Linked Nodes 256
Number of Links 275
Number of Hubs 33
Number of Links mediated by Hubs 133
Number of Communities 10
Number of Nodes involved in Communities 47
Number of Links involved in Communities 54
Path Summary
Number Of Nodes in MetaPath 96
Number Of Links MetaPath 95
Number of Shortest Paths 39793
Length Of Smallest Path 3
Average Path Length 12.0865
Length of Longest Path 31
Minimum Path Strength 1.38
Average Path Strength 4.88058
Maximum Path Strength 15.26
Minimum Path Correlation 0.7
Average Path Correlation 0.924765
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 51.8234
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 36.0964
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • neuropeptide signaling pathway   • immune response   • immune system process   • phospholipase C-activating G protein-coupled receptor signaling pathway   • multicellular organismal process   • system process   • muscle contraction   • muscle system process   • defense response   • response to stress   • inflammatory response   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle   • nuclear lumen   • cell cortex   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • cytosol   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • organelle membrane   • lysosome   • Golgi apparatus   • endomembrane system   • cilium   • plasma membrane bounded cell projection   • ciliary basal body   • cell projection   • enzyme binding   • GTPase binding   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeLTB
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeLTB
NameLeukotriene B4
Synonyms
  • LTB4
  • Leukotriene B4
Identifier
FormulaC20 H32 O4
Molecular Weight336.466
SMILES
PubChem5280492
Formal Charge0
Total Atoms56
Total Chiral Atoms2
Total Bonds55
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ15722
Sequence
>7VKT_nogp_Chain_R
EFISLLAII LLSVALAVG LPGNSFVVW SILKRMQKR SVTALMVLN 
LALADLAVL LTAPFFLHF LAQGTWSFG LAGCRLCHY VCGVSMYAS 
VWLITAMSL DRSLAVARP FVSQKLRTK AMARRVLAG IWVLSFLLA 
TPVLAYRTV VPWKTNMSL CFPRYPSEG HRAFHLIFE AVTGFLLPF 
LIVVASYSD IGRRLQARR FRRSRRTGR LVVLIILTF AAFWLPYHV 
VNLAEAGRA LAGQAAGLG LVGKRLSLA RNVLIALAF LSSSVNPVL 
YAFAGGGLL RSAGVGFV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7VKTALipidLeukotrieneBLT1Homo sapiensLTB4-Gi1/β1/γ22.92022-03-0910.1038/s41467-022-28820-9
7VKT (No Gprot) ALipidLeukotrieneBLT1Homo sapiensLTB4-2.92022-03-0910.1038/s41467-022-28820-9
7K15ALipidLeukotrieneBLT1Homo sapiensMKD046Na-2.882021-02-1710.1038/s41467-021-23149-1
5X33ALipidLeukotrieneBLT1Cavia porcellusBIIL260--3.72018-01-0310.1038/nchembio.2547




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