Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 12.0667610
2R:R:N71 7.82429
3R:R:N86 5.285477
4R:R:F91 6.0525408
5R:R:C127 3.805439
6R:R:I131 3.4525435
7R:R:D134 12.325418
8R:R:L136 4.11406
9R:R:F137 5.674507
10R:R:T139 3.1625407
11R:R:H144 7.10833658
12R:R:I148 4.0625449
13R:R:Y153 4.846508
14R:R:K170 6.8175487
15R:R:M173 1.815483
16R:R:W179 4.18559
17R:R:I189 7.1436
18R:R:K199 7.1775403
19R:R:F201 5.0675404
20R:R:F223 11.264108
21R:R:F224 6.25754106
22R:R:P226 4.2775409
23R:R:Y234 6.0875409
24R:R:M323 4.245408
25R:R:W324 6.625408
26R:R:T330 3.795405
27R:R:W355 7.1875417
28R:R:Y358 6.844518
29R:R:Y368 5.02667649
30R:R:Y375 3.97408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y358 13.35474.13YesYes108
2R:R:W355 R:R:Y358 10.05199.65YesYes178
3L:L:?1 R:R:D134 51.625223.92YesYes108
4L:L:?1 R:R:V135 89.954619.25YesNo006
5R:R:V135 R:R:V185 45.40523.21NoNo066
6R:R:T139 R:R:V185 45.88554.76YesNo076
7R:R:M143 R:R:T139 24.6973.01NoYes067
8R:R:M143 R:R:V178 25.26873.04NoNo067
9R:R:H144 R:R:V178 25.41576.92YesNo087
10R:R:F91 R:R:H144 10011.31YesYes088
11R:R:F91 R:R:K174 48.4633.72YesNo086
12R:R:K170 R:R:K174 42.638314.37YesNo876
13R:R:D151 R:R:K170 41.14862.77NoYes097
14R:R:D151 R:R:H162 40.23066.3NoNo098
15R:R:H162 R:R:N166 38.228112.75NoNo086
16R:R:A87 R:R:N166 37.09453.13NoNo056
17R:R:A87 R:R:N86 35.97073.13NoYes057
18R:R:N86 R:R:Y90 32.462211.63YesNo774
19R:R:V78 R:R:Y90 31.38092.52NoNo084
20R:R:L84 R:R:V78 29.28032.98NoNo088
21R:R:L84 R:R:N89 28.107510.98NoNo089
22R:R:N89 R:R:Y375 24.54355.81NoYes098
23R:R:A77 R:R:Y375 17.47412.67NoYes078
24R:R:S182 R:R:T139 23.29553.2NoYes087
25R:R:A140 R:R:S182 45.47713.42NoNo088
26R:R:A140 R:R:H144 45.26152.93NoYes588
27R:R:S186 R:R:V135 45.97043.23NoNo086
28R:R:L136 R:R:S186 46.49644.5YesNo068
29R:R:L136 R:R:S182 23.65493YesNo068
30R:R:F137 R:R:L136 25.59216.09YesYes076
31R:R:F137 R:R:W179 32.12574.01YesYes079
32R:R:H144 R:R:W179 31.6394.23YesYes589
33R:R:F91 R:R:I148 66.38465.02YesYes089
34R:R:D134 R:R:W130 49.80243.35YesNo085
35R:R:C207 R:R:W130 45.31053.92NoNo095
36R:R:C127 R:R:C207 32.99147.28YesNo399
37R:R:C127 R:R:F201 30.17542.79YesYes094
38R:R:C207 R:R:I131 10.92093.27NoYes395
39R:R:I148 R:R:Y368 34.42236.04YesYes499
40R:R:L145 R:R:Y368 23.55695.86NoYes499
41R:R:I148 R:R:R152 30.05463.76YesNo499
42R:R:F320 R:R:L145 22.44292.44NoNo099
43R:R:L313 R:R:R152 31.80233.64NoNo089
44R:R:L313 R:R:T237 19.14672.95NoNo089
45R:R:T237 R:R:Y153 16.68686.24NoYes098
46R:R:F201 R:R:V200 20.21173.93YesNo043
47R:R:K199 R:R:V200 16.84043.04YesNo033
48R:R:D211 R:R:K199 10.01935.53NoYes053
49L:L:?1 R:R:F327 28.97655.72YesNo107
50R:R:F327 R:R:L350 28.50283.65NoNo074
51R:R:F320 R:R:W324 18.82669.02NoYes098
52R:R:F223 R:R:W324 11.49594.01YesYes088
53R:R:L313 R:R:Y234 12.69482.34NoYes089
54R:R:L350 R:R:T330 23.80194.42NoYes045
55R:R:M346 R:R:T330 14.7791.51NoYes045
56R:R:C341 R:R:M346 11.133.24NoNo034
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D134 23.92 1 Yes Yes 0 8 0 1
L:L:?1 R:R:V135 19.25 1 Yes No 0 6 0 1
L:L:?1 R:R:S138 15.88 1 Yes No 0 6 0 1
L:L:?1 R:R:F327 5.72 1 Yes No 0 7 0 1
L:L:?1 R:R:V354 3.5 1 Yes No 0 7 0 1
L:L:?1 R:R:Y358 4.13 1 Yes Yes 0 8 0 1
R:R:D134 R:R:V106 11.69 1 Yes No 8 7 1 2
R:R:V106 R:R:Y358 5.05 1 No Yes 7 8 2 1
R:R:D134 R:R:W130 3.35 1 Yes No 8 5 1 2
R:R:D134 R:R:Y358 10.34 1 Yes Yes 8 8 1 1
R:R:V135 R:R:V185 3.21 0 No No 6 6 1 2
R:R:S186 R:R:V135 3.23 0 No No 8 6 2 1
R:R:F327 R:R:L350 3.65 1 No No 7 4 1 2
R:R:F327 R:R:V354 7.87 1 No No 7 7 1 1
R:R:V354 R:R:Y358 5.05 1 No Yes 7 8 1 1
R:R:W355 R:R:Y358 9.65 1 Yes Yes 7 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8DPH_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.75
Number of Linked Nodes 250
Number of Links 262
Number of Hubs 30
Number of Links mediated by Hubs 114
Number of Communities 10
Number of Nodes involved in Communities 45
Number of Links involved in Communities 53
Path Summary
Number Of Nodes in MetaPath 57
Number Of Links MetaPath 56
Number of Shortest Paths 43236
Length Of Smallest Path 3
Average Path Length 16.9861
Length of Longest Path 38
Minimum Path Strength 1.3
Average Path Strength 6.19634
Maximum Path Strength 21.585
Minimum Path Correlation 0.7
Average Path Correlation 0.914341
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.0303
Average % Of Corr. Nodes 38.7298
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.8601
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeT4U
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeT4U
NameLorcaserin
SynonymsLorcaserin
Identifier
FormulaC11 H14 Cl N
Molecular Weight195.689
SMILES
PubChem11658860
Formal Charge0
Total Atoms27
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP28335
Sequence
>8DPH_nogp_Chain_R
SIVIIIIMT IGGNILVIM AVSMEKKLH NATNYFLMS LAIADMLVG 
LLVMPLSLL AILYDYVWL CPVWISLDV LFSTASIMH LCAISLDRY 
VAVRSPVEH SRFNSRTKA IMKIAIVWA ISIGVSVPI PVIGLRDEE 
KVFVNTCVL NDPNFVLIG SFVAFFIPL TIMVITYCL TIYVLRRQA 
LMMQAINNE RKASKVLGI VFFVFLIMW CPFFITNIL SVLCECNQK 
LMEKLLNVF VWIGYVCSG INPLVYTLF NKIYRRAFS NYL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6BQGAAmine5-Hydroxytryptamine5-HT2CHomo sapiensErgotamine--32018-02-14doi.org/10.1016/j.cell.2018.01.001
6BQHAAmine5-Hydroxytryptamine5-HT2CHomo sapiensRitanserin--2.72018-02-14doi.org/10.1016/j.cell.2018.01.001
8DPFAAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-chim(NtGi2L-Gs-CtGq)/β1/γ22.842022-08-24doi.org/10.1016/j.celrep.2022.111211
8DPF (No Gprot) AAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-2.842022-08-24doi.org/10.1016/j.celrep.2022.111211
8DPGAAmine5-Hydroxytryptamine5-HT2CHomo sapiensPsilocin-chim(NtGi2L-Gs-CtGq)/β1/γ23.62022-08-24doi.org/10.1016/j.celrep.2022.111211
8DPG (No Gprot) AAmine5-Hydroxytryptamine5-HT2CHomo sapiensPsilocin-3.62022-08-24doi.org/10.1016/j.celrep.2022.111211
8DPHAAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-chim(NtGi2L-Gs-CtGq)/β1/γ23.22022-08-24doi.org/10.1016/j.celrep.2022.111211
8DPH (No Gprot) AAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-3.22022-08-24doi.org/10.1016/j.celrep.2022.111211
8DPIAAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-chim(NtGi2L-Gs-CtGq)/β1/γ23.42022-08-24doi.org/10.1016/j.celrep.2022.111211
8DPI (No Gprot) AAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-3.42022-08-24doi.org/10.1016/j.celrep.2022.111211
8ZMFAAmine5-Hydroxytryptamine5-HT2CHomo sapiensPubChem 171920673--3.62024-08-28doi.org/10.1021/acs.jmedchem.4c01244




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Download 8DPH_nogp.zip



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