Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 12.0667610
2R:R:N71 7.82429
3R:R:N86 5.285477
4R:R:F91 6.0525408
5R:R:C127 3.805439
6R:R:I131 3.4525435
7R:R:D134 12.325418
8R:R:L136 4.11406
9R:R:F137 5.674507
10R:R:T139 3.1625407
11R:R:H144 7.10833658
12R:R:I148 4.0625449
13R:R:Y153 4.846508
14R:R:K170 6.8175487
15R:R:M173 1.815483
16R:R:W179 4.18559
17R:R:I189 7.1436
18R:R:K199 7.1775403
19R:R:F201 5.0675404
20R:R:F223 11.264108
21R:R:F224 6.25754106
22R:R:P226 4.2775409
23R:R:Y234 6.0875409
24R:R:M323 4.245408
25R:R:W324 6.625408
26R:R:T330 3.795405
27R:R:W355 7.1875417
28R:R:Y358 6.844518
29R:R:Y368 5.02667649
30R:R:Y375 3.97408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y358 13.35474.13YesYes108
2R:R:W355 R:R:Y358 10.05199.65YesYes178
3L:L:?1 R:R:D134 51.625223.92YesYes108
4L:L:?1 R:R:V135 89.954619.25YesNo006
5R:R:V135 R:R:V185 45.40523.21NoNo066
6R:R:T139 R:R:V185 45.88554.76YesNo076
7R:R:M143 R:R:T139 24.6973.01NoYes067
8R:R:M143 R:R:V178 25.26873.04NoNo067
9R:R:H144 R:R:V178 25.41576.92YesNo087
10R:R:F91 R:R:H144 10011.31YesYes088
11R:R:F91 R:R:K174 48.4633.72YesNo086
12R:R:K170 R:R:K174 42.638314.37YesNo876
13R:R:D151 R:R:K170 41.14862.77NoYes097
14R:R:D151 R:R:H162 40.23066.3NoNo098
15R:R:H162 R:R:N166 38.228112.75NoNo086
16R:R:A87 R:R:N166 37.09453.13NoNo056
17R:R:A87 R:R:N86 35.97073.13NoYes057
18R:R:N86 R:R:Y90 32.462211.63YesNo774
19R:R:V78 R:R:Y90 31.38092.52NoNo084
20R:R:L84 R:R:V78 29.28032.98NoNo088
21R:R:L84 R:R:N89 28.107510.98NoNo089
22R:R:N89 R:R:Y375 24.54355.81NoYes098
23R:R:A77 R:R:Y375 17.47412.67NoYes078
24R:R:S182 R:R:T139 23.29553.2NoYes087
25R:R:A140 R:R:S182 45.47713.42NoNo088
26R:R:A140 R:R:H144 45.26152.93NoYes588
27R:R:S186 R:R:V135 45.97043.23NoNo086
28R:R:L136 R:R:S186 46.49644.5YesNo068
29R:R:L136 R:R:S182 23.65493YesNo068
30R:R:F137 R:R:L136 25.59216.09YesYes076
31R:R:F137 R:R:W179 32.12574.01YesYes079
32R:R:H144 R:R:W179 31.6394.23YesYes589
33R:R:F91 R:R:I148 66.38465.02YesYes089
34R:R:D134 R:R:W130 49.80243.35YesNo085
35R:R:C207 R:R:W130 45.31053.92NoNo095
36R:R:C127 R:R:C207 32.99147.28YesNo399
37R:R:C127 R:R:F201 30.17542.79YesYes094
38R:R:C207 R:R:I131 10.92093.27NoYes395
39R:R:I148 R:R:Y368 34.42236.04YesYes499
40R:R:L145 R:R:Y368 23.55695.86NoYes499
41R:R:I148 R:R:R152 30.05463.76YesNo499
42R:R:F320 R:R:L145 22.44292.44NoNo099
43R:R:L313 R:R:R152 31.80233.64NoNo089
44R:R:L313 R:R:T237 19.14672.95NoNo089
45R:R:T237 R:R:Y153 16.68686.24NoYes098
46R:R:F201 R:R:V200 20.21173.93YesNo043
47R:R:K199 R:R:V200 16.84043.04YesNo033
48R:R:D211 R:R:K199 10.01935.53NoYes053
49L:L:?1 R:R:F327 28.97655.72YesNo107
50R:R:F327 R:R:L350 28.50283.65NoNo074
51R:R:F320 R:R:W324 18.82669.02NoYes098
52R:R:F223 R:R:W324 11.49594.01YesYes088
53R:R:L313 R:R:Y234 12.69482.34NoYes089
54R:R:L350 R:R:T330 23.80194.42NoYes045
55R:R:M346 R:R:T330 14.7791.51NoYes045
56R:R:C341 R:R:M346 11.133.24NoNo034
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D134 23.92 1 Yes Yes 0 8 0 1
L:L:?1 R:R:V135 19.25 1 Yes No 0 6 0 1
L:L:?1 R:R:S138 15.88 1 Yes No 0 6 0 1
L:L:?1 R:R:F327 5.72 1 Yes No 0 7 0 1
L:L:?1 R:R:V354 3.5 1 Yes No 0 7 0 1
L:L:?1 R:R:Y358 4.13 1 Yes Yes 0 8 0 1
R:R:D134 R:R:V106 11.69 1 Yes No 8 7 1 2
R:R:V106 R:R:Y358 5.05 1 No Yes 7 8 2 1
R:R:D134 R:R:W130 3.35 1 Yes No 8 5 1 2
R:R:D134 R:R:Y358 10.34 1 Yes Yes 8 8 1 1
R:R:V135 R:R:V185 3.21 0 No No 6 6 1 2
R:R:S186 R:R:V135 3.23 0 No No 8 6 2 1
R:R:F327 R:R:L350 3.65 1 No No 7 4 1 2
R:R:F327 R:R:V354 7.87 1 No No 7 7 1 1
R:R:V354 R:R:Y358 5.05 1 No Yes 7 8 1 1
R:R:W355 R:R:Y358 9.65 1 Yes Yes 7 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8DPH_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.75
Number of Linked Nodes 250
Number of Links 262
Number of Hubs 30
Number of Links mediated by Hubs 114
Number of Communities 10
Number of Nodes involved in Communities 45
Number of Links involved in Communities 53
Path Summary
Number Of Nodes in MetaPath 57
Number Of Links MetaPath 56
Number of Shortest Paths 43236
Length Of Smallest Path 3
Average Path Length 16.9861
Length of Longest Path 38
Minimum Path Strength 1.3
Average Path Strength 6.19634
Maximum Path Strength 21.585
Minimum Path Correlation 0.7
Average Path Correlation 0.914341
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.0303
Average % Of Corr. Nodes 38.6984
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.8601
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• cation binding   • binding   • ion binding   • serotonin binding   • amine binding   • heterocyclic compound binding   • small molecule binding   • neurotransmitter receptor activity   • molecular transducer activity   • signaling receptor activity   • serotonin receptor activity   • transmembrane signaling receptor activity   • G protein-coupled amine receptor activity   • G protein-coupled serotonin receptor activity   • G protein-coupled receptor activity   • 1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding   • Gq/11-coupled serotonin receptor activity   • identical protein binding   • protein binding   • behavior   • multicellular organismal process   • locomotory behavior   • cellular response to stimulus   • positive regulation of cell communication   • regulation of cellular process   • positive regulation of signal transduction   • response to stimulus   • signaling   • positive regulation of biological process   • regulation of signal transduction   • intracellular signal transduction   • cell communication   • positive regulation of response to stimulus
Gene OntologyBiological Process• behavior   • multicellular organismal process   • locomotory behavior   • cellular response to stimulus   • positive regulation of cell communication   • regulation of cellular process   • positive regulation of signal transduction   • response to stimulus   • signaling   • positive regulation of biological process   • regulation of signal transduction   • intracellular signal transduction   • cell communication   • positive regulation of response to stimulus   • regulation of intracellular signal transduction   • intracellular signaling cassette   • regulation of calcium-mediated signaling   • positive regulation of calcium-mediated signaling   • signal transduction   • positive regulation of cellular process   • regulation of biological process   • regulation of signaling   • biological regulation   • positive regulation of intracellular signal transduction   • regulation of response to stimulus   • calcium-mediated signaling   • regulation of cell communication   • cellular process   • positive regulation of signaling   • system process   • nervous system process   • regulation of system process   • regulation of multicellular organismal process   • regulation of nervous system process   • phospholipase C-activating serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • regulation of localization   • regulation of hormone secretion   • nitrogen compound transport   • regulation of peptide secretion   • transport   • hormone secretion   • localization   • peptide secretion   • corticotropin-releasing hormone secretion   • regulation of secretion by cell   • secretion by cell   • amide transport   • signal release   • regulation of biological quality   • regulation of peptide hormone secretion   • regulation of transport   • secretion   • regulation of corticotropin-releasing hormone secretion   • regulation of hormone levels   • regulation of peptide transport   • export from cell   • cell-cell signaling   • establishment of localization   • regulation of secretion   • peptide transport   • peptide hormone secretion   • hormone transport   • positive regulation of ERK1 and ERK2 cascade   • positive regulation of MAPK cascade   • regulation of MAPK cascade   • MAPK cascade   • ERK1 and ERK2 cascade   • regulation of ERK1 and ERK2 cascade   • regulation of lipid metabolic process   • glycerophospholipid metabolic process   • lipid biosynthetic process   • positive regulation of phosphate metabolic process   • regulation of primary metabolic process   • phospholipid metabolic process   • positive regulation of metabolic process   • positive regulation of biosynthetic process   • regulation of phosphate metabolic process   • phosphate-containing compound metabolic process   • positive regulation of lipid metabolic process   • positive regulation of phosphatidylinositol biosynthetic process   • phosphorus metabolic process   • regulation of phosphatidylinositol biosynthetic process   • regulation of biosynthetic process   • phosphatidylinositol metabolic process   • positive regulation of phosphorus metabolic process   • glycerophospholipid biosynthetic process   • positive regulation of phospholipid biosynthetic process   • regulation of phospholipid metabolic process   • primary metabolic process   • phospholipid biosynthetic process   • regulation of phospholipid biosynthetic process   • phosphatidylinositol biosynthetic process   • positive regulation of phospholipid metabolic process   • biosynthetic process   • positive regulation of lipid biosynthetic process   • glycerolipid biosynthetic process   • organophosphate metabolic process   • organophosphate biosynthetic process   • metabolic process   • regulation of phosphorus metabolic process   • glycerolipid metabolic process   • regulation of lipid biosynthetic process   • regulation of metabolic process   • lipid metabolic process   • cGMP-mediated signaling   • inorganic ion homeostasis   • intracellular calcium ion homeostasis   • homeostatic process   • calcium ion homeostasis   • cellular homeostasis   • chemical homeostasis   • intracellular monoatomic cation homeostasis   • monoatomic ion homeostasis   • intracellular chemical homeostasis   • monoatomic cation homeostasis   • intracellular monoatomic ion homeostasis   • feeding behavior   • cellular response to nitrogen compound   • response to dopamine   • serotonin receptor signaling pathway   • cellular response to dopamine   • response to monoamine   • response to oxygen-containing compound   • response to nitrogen compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • response to catecholamine   • cellular response to monoamine stimulus   • response to chemical   • cellular response to catecholamine stimulus   • cellular localization   • monoatomic ion transmembrane transport   • negative regulation of biological process   • negative regulation of sequestering of calcium ion   • calcium ion transport   • metal ion transport   • maintenance of location in cell   • monoatomic cation transmembrane transport   • negative regulation of cellular process   • monoatomic ion transport   • monoatomic cation transport   • regulation of sequestering of calcium ion   • calcium ion transmembrane import into cytosol   • sequestering of calcium ion   • inorganic ion transmembrane transport   • inorganic cation transmembrane transport   • maintenance of location   • transmembrane transport   • release of sequestered calcium ion into cytosol   • calcium ion transmembrane transport   • trans-synaptic signaling   • synaptic signaling   • anterograde trans-synaptic signaling   • chemical synaptic transmission   • response to nutrient levels   • regulation of appetite   • behavioral defense response   • fear response   • behavioral fear response   • defense response   • response to stress   • multicellular organismal response to stress   • developmental process   • fat cell differentiation   • positive regulation of fat cell differentiation   • regulation of developmental process   • cellular developmental process   • regulation of cell differentiation   • positive regulation of developmental process   • positive regulation of cell differentiation   • cell differentiation   • regulation of fat cell differentiation   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • protein-containing complex   • G protein-coupled serotonin receptor complex   • receptor complex   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • synapse
Gene OntologyCellular Component• protein-containing complex   • G protein-coupled serotonin receptor complex   • receptor complex   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • synapse   • cell junction   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • G-protein beta-subunit binding   • fibroblast proliferation
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeT4U
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeT4U
NameLorcaserin
SynonymsLorcaserin
Identifier
FormulaC11 H14 Cl N
Molecular Weight195.689
SMILES
PubChem11658860
Formal Charge0
Total Atoms27
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP28335
Sequence
>8DPH_nogp_Chain_R
SIVIIIIMT IGGNILVIM AVSMEKKLH NATNYFLMS LAIADMLVG 
LLVMPLSLL AILYDYVWL CPVWISLDV LFSTASIMH LCAISLDRY 
VAVRSPVEH SRFNSRTKA IMKIAIVWA ISIGVSVPI PVIGLRDEE 
KVFVNTCVL NDPNFVLIG SFVAFFIPL TIMVITYCL TIYVLRRQA 
LMMQAINNE RKASKVLGI VFFVFLIMW CPFFITNIL SVLCECNQK 
LMEKLLNVF VWIGYVCSG INPLVYTLF NKIYRRAFS NYL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8ZMFAAmine5-Hydroxytryptamine5-HT2CHomo sapiensA1L10--3.62024-08-2810.1021/acs.jmedchem.4c01244
8DPIAAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-chim(NtGi2L-Gs-CtGq)/β1/γ23.42022-08-2410.1016/j.celrep.2022.111211
8DPI (No Gprot) AAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-3.42022-08-2410.1016/j.celrep.2022.111211
8DPHAAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-chim(NtGi2L-Gs-CtGq)/β1/γ23.22022-08-2410.1016/j.celrep.2022.111211
8DPH (No Gprot) AAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-3.22022-08-2410.1016/j.celrep.2022.111211
8DPGAAmine5-Hydroxytryptamine5-HT2CHomo sapiensPsilocin-chim(NtGi2L-Gs-CtGq)/β1/γ23.62022-08-2410.1016/j.celrep.2022.111211
8DPG (No Gprot) AAmine5-Hydroxytryptamine5-HT2CHomo sapiensPsilocin-3.62022-08-2410.1016/j.celrep.2022.111211
8DPFAAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-chim(NtGi2L-Gs-CtGq)/β1/γ22.842022-08-2410.1016/j.celrep.2022.111211
8DPF (No Gprot) AAmine5-Hydroxytryptamine5-HT2CHomo sapiensLorcaserin-2.842022-08-2410.1016/j.celrep.2022.111211
6BQHAAmine5-Hydroxytryptamine5-HT2CHomo sapiensRitanserin--2.72018-02-1410.1016/j.cell.2018.01.001
6BQGAAmine5-Hydroxytryptamine5-HT2CHomo sapiensErgotamine--32018-02-1410.1016/j.cell.2018.01.001




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Download 8DPH_nogp.zip



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