Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Q80 5.274524
2R:R:R84 7.535424
3R:R:W88 7.402524
4R:R:Y92 8.418527
5R:R:V100 2.238506
6R:R:W108 2.865404
7R:R:F123 4.364508
8R:R:L127 6.95469
9R:R:D131 6.9125469
10R:R:M134 5.26407
11R:R:N142 5.9125416
12R:R:F143 8.595407
13R:R:Y145 6.7775414
14R:R:W151 7.93518
15R:R:F153 3.866517
16R:R:Y157 6.3725416
17R:R:C158 7.03419
18R:R:Q161 7.3515
19R:R:N162 8.1675415
20R:R:F164 5.524535
21R:R:I166 4.5514
22R:R:T167 6.915435
23R:R:F170 6.3525406
24R:R:D189 5.9425405
25R:R:W208 6.204539
26R:R:S222 6.0375415
27R:R:F234 11.5114714
28R:R:W237 10.0425405
29R:R:H244 10.7875405
30R:R:F245 5.325403
31R:R:Y247 6.66616
32R:R:H248 6.645415
33R:R:M300 3.995408
34R:R:M301 7.0925408
35R:R:W312 7.81333618
36R:R:Y315 6.535616
37R:R:Y318 7.202514
38R:R:F319 8.875415
39R:R:I334 3.8075403
40R:R:Y338 7.39514
41R:R:F342 6.84616
42R:R:Y356 6.38409
43L:L:F11 7.035400
44L:L:L13 9.4775410
45L:L:M14 7.534510
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F78 R:R:Q335 31.31945.86NoNo053
2R:R:Q335 R:R:Q80 29.35276.4NoYes034
3R:R:Q80 R:R:W88 18.09694.38YesYes244
4R:R:W88 R:R:Y92 14.46066.75YesYes247
5R:R:F143 R:R:Y92 27.357614.44YesYes077
6R:R:F143 R:R:L147 13.208313.4YesNo074
7R:R:W343 R:R:Y92 20.360812.54NoYes057
8R:R:V95 R:R:W343 11.63783.68NoNo085
9L:L:F10 R:R:F78 39.97884.29NoNo005
10L:L:F10 R:R:Y338 39.12276.19NoYes004
11R:R:F342 R:R:Y338 52.783913.41YesYes164
12R:R:F342 R:R:M346 60.46699.95YesNo167
13R:R:M134 R:R:M346 60.30424.33YesNo077
14R:R:M134 R:R:T349 21.76876.02YesNo079
15R:R:A99 R:R:T349 19.40573.36NoNo089
16R:R:A135 R:R:A99 17.02871.79NoNo068
17R:R:A135 R:R:V100 14.63741.7NoYes066
18R:R:M134 R:R:S172 1006.13YesNo079
19R:R:D131 R:R:S172 97.76447.36YesNo099
20R:R:D131 R:R:N103 10.29365.39YesNo099
21R:R:D131 R:R:N352 78.82564.04YesNo699
22R:R:N352 R:R:Y356 99.54023.49NoYes099
23R:R:F363 R:R:Y356 34.20596.19NoYes089
24R:R:F363 R:R:I109 30.27945.02NoNo087
25R:R:I109 R:R:M116 26.32472.92NoNo077
26R:R:H113 R:R:M116 15.45813.94NoNo057
27R:R:H113 R:R:W108 13.24373.17NoYes054
28R:R:L124 R:R:Y356 24.16711.72NoYes089
29R:R:L124 R:R:N121 22.2714.12NoNo088
30R:R:I110 R:R:N121 11.04359.91NoNo078
31R:R:R183 R:R:Y356 57.5384.12NoYes099
32R:R:I179 R:R:R183 19.07327.52NoNo099
33R:R:F123 R:R:I179 16.93673.77YesNo089
34R:R:N121 R:R:T120 10.00355.85NoNo088
35R:R:F342 R:R:N142 59.95054.83YesYes166
36R:R:N142 R:R:Q161 43.07049.24YesYes165
37R:R:Q161 R:R:Y157 30.78884.51YesYes156
38R:R:F160 R:R:Y157 39.00968.25NoYes056
39R:R:F160 R:R:F164 38.2957.5NoYes055
40R:R:F164 R:R:W208 27.69014.01YesYes359
41R:R:N126 R:R:W208 26.91196.78NoYes099
42R:R:D131 R:R:L127 14.156310.86YesYes699
43R:R:L127 R:R:S175 30.49884.5YesNo097
44R:R:N126 R:R:S175 29.3817.45NoNo097
45R:R:F342 R:R:Y315 52.27454.13YesYes166
46R:R:W312 R:R:Y315 63.64347.72YesYes186
47R:R:V169 R:R:W312 32.64953.68NoYes078
48R:R:M134 R:R:V169 53.75314.56YesNo077
49R:R:F153 R:R:V141 10.76767.87YesNo175
50R:R:Q161 R:R:V141 11.94918.6YesNo155
51R:R:F153 R:R:Y157 29.55785.16YesYes176
52R:R:F153 R:R:I144 42.06581.26YesNo074
53R:R:F143 R:R:I144 40.04951.26YesNo074
54L:L:L13 R:R:N142 17.20555.49YesYes106
55R:R:F234 R:R:Q161 15.10444.68YesYes145
56R:R:F234 R:R:W151 17.163112.03YesYes148
57R:R:C158 R:R:F234 11.687313.97YesYes194
58R:R:C233 R:R:W151 11.1855.22NoYes098
59R:R:C158 R:R:T224 11.69445.07YesNo095
60L:L:F10 R:R:I334 15.23883.77NoYes003
61R:R:I334 R:R:Y318 18.91056.04YesYes034
62R:R:F319 R:R:Y318 21.38669.28YesYes154
63L:L:M14 R:R:I166 16.47684.37YesYes104
64R:R:Y318 R:R:Y338 24.711711.91YesYes144
65L:L:M14 R:R:Y315 31.567.18YesYes106
66R:R:F163 R:R:F212 10.28658.57NoNo064
67R:R:F170 R:R:I166 22.51153.77YesYes064
68R:R:F170 R:R:V169 39.39873.93YesNo067
69R:R:F319 R:R:H248 29.27499.05YesYes155
70R:R:H248 R:R:Y247 18.49317.62YesYes156
71R:R:L214 R:R:Y247 17.45313.52NoYes156
72R:R:F170 R:R:V255 12.83349.18YesNo066
73R:R:F308 R:R:W312 10.456311.02NoYes198
74R:R:I173 R:R:W312 46.345911.74NoYes178
75R:R:V255 R:R:Y174 10.29363.79NoNo066
76R:R:I173 R:R:P259 46.94023.39NoNo079
77R:R:P259 R:R:T177 44.46413.5NoNo097
78R:R:I262 R:R:T177 42.05874.56NoNo067
79R:R:R183 R:R:Y267 42.99268.23NoNo099
80R:R:I262 R:R:T266 35.64913.04NoNo067
81R:R:T266 R:R:Y184 31.68737.49NoNo078
82R:R:I188 R:R:Y184 26.657212.09NoNo078
83R:R:I188 R:R:T273 17.01453.04NoNo074
84R:R:I187 R:R:T273 15.62793.04NoNo084
85R:R:M301 R:R:Y267 39.759517.96YesNo089
86R:R:M301 R:R:V270 10.83833.04YesNo088
87R:R:M301 R:R:V297 16.26463.04YesNo087
88R:R:L274 R:R:V297 14.42524.47NoNo087
89R:R:D189 R:R:I188 14.49592.8YesNo057
90R:R:H244 R:R:H248 36.35.97YesYes055
91R:R:H244 R:R:W237 15.932122.22YesYes055
92R:R:Q243 R:R:W237 39.00966.57NoYes025
93R:R:E239 R:R:Q243 35.15398.92NoNo042
94R:R:E239 R:R:Y221 19.58972.24NoNo044
95R:R:W237 R:R:Y247 35.52188.68YesYes056
96R:R:P238 R:R:Y221 11.72275.56NoNo044
97L:L:D9 L:L:F11 16.51225.97NoYes000
98L:L:F11 R:R:N329 14.26953.62YesNo002
99R:R:N329 R:R:T322 16.3077.31NoNo024
100R:R:T322 R:R:Y318 18.5786.24NoYes044
101R:R:H244 R:R:Q236 14.9776.18YesNo053
102L:L:F11 R:R:Q236 10.00359.37YesNo003
103R:R:E239 R:R:G240 11.89954.91NoNo044
104R:R:F245 R:R:I320 21.0472.51YesNo035
105R:R:I252 R:R:I320 24.49954.42NoNo055
106R:R:H316 R:R:I252 32.91837.95NoNo075
107R:R:H316 R:R:Y315 36.05947.62NoYes076
108R:R:F308 R:R:L260 10.83834.87NoNo096
109R:R:K294 R:R:L274 18.21727.05NoNo078
110R:R:K294 R:R:L291 13.7465.64NoNo072
111R:R:L291 R:R:R295 11.48924.86NoNo024
112R:R:M300 R:R:M301 13.33574.33YesYes088
113R:R:S348 R:R:W312 14.53134.94NoYes098
114R:R:S348 R:R:Y351 11.65193.82NoNo096
115R:R:I334 R:R:W331 12.78392.35YesNo031
116R:R:F153 R:R:W151 12.64244.01YesYes178
117R:R:F234 R:R:N162 21.719115.71YesYes145
118R:R:I166 R:R:N162 31.46094.25YesYes145
119R:R:F170 R:R:L214 19.59678.53YesNo065
120R:R:L127 R:R:N352 22.04469.61YesNo699
121R:R:Q218 R:R:Y247 12.51510.15NoYes156
122L:L:M14 R:R:H248 24.40043.94YesYes105
123R:R:F319 R:R:Y315 26.84127.22YesYes156
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F78 R:R:Q77 14.05 0 No No 5 5 1 1
R:R:K332 R:R:Q77 16.27 4 No No 1 5 1 1
L:L:D8 R:R:Q77 5.22 4 No No 0 5 0 1
R:R:F78 R:R:Q335 5.86 0 No No 5 3 1 2
L:L:F10 R:R:F78 4.29 0 No No 0 5 0 1
R:R:N138 R:R:N142 4.09 1 No Yes 7 6 2 1
R:R:F342 R:R:N138 4.83 1 Yes No 6 7 2 2
R:R:N142 R:R:Q161 9.24 1 Yes Yes 6 5 1 2
R:R:F342 R:R:N142 4.83 1 Yes Yes 6 6 2 1
L:L:L13 R:R:N142 5.49 1 Yes Yes 0 6 0 1
R:R:S149 R:R:Y145 3.82 0 No Yes 4 4 2 1
R:R:W151 R:R:Y145 14.47 1 Yes Yes 8 4 2 1
R:R:F234 R:R:Y145 4.13 1 Yes Yes 4 4 1 1
L:L:L13 R:R:Y145 4.69 1 Yes Yes 0 4 0 1
R:R:C158 R:R:W151 3.92 1 Yes Yes 9 8 2 2
R:R:F234 R:R:W151 12.03 1 Yes Yes 4 8 1 2
R:R:C158 R:R:S222 5.16 1 Yes Yes 9 5 2 2
R:R:C158 R:R:F234 13.97 1 Yes Yes 9 4 2 1
R:R:F234 R:R:Q161 4.68 1 Yes Yes 4 5 1 2
R:R:I166 R:R:N162 4.25 1 Yes Yes 4 5 1 1
R:R:N162 R:R:S222 4.47 1 Yes Yes 5 5 1 2
R:R:F234 R:R:N162 15.71 1 Yes Yes 4 5 1 1
L:L:L13 R:R:N162 8.24 1 Yes Yes 0 5 0 1
R:R:F170 R:R:I166 3.77 0 Yes Yes 6 4 2 1
R:R:I166 R:R:Q218 6.86 1 Yes No 4 5 1 1
L:L:M14 R:R:I166 4.37 1 Yes Yes 0 4 0 1
R:R:Q218 R:R:Y247 10.15 1 No Yes 5 6 1 2
L:L:M14 R:R:Q218 12.23 1 Yes No 0 5 0 1
R:R:F234 R:R:S222 10.57 1 Yes Yes 4 5 1 2
L:L:D9 R:R:L232 8.14 0 No No 0 3 0 1
L:L:L13 R:R:F234 19.49 1 Yes Yes 0 4 0 1
L:L:F11 R:R:V235 9.18 0 Yes No 0 4 0 1
R:R:H244 R:R:Q236 6.18 0 Yes No 5 3 2 1
L:L:F11 R:R:Q236 9.37 0 Yes No 0 3 0 1
R:R:H244 R:R:H248 5.97 0 Yes Yes 5 5 2 1
R:R:H248 R:R:Y247 7.62 1 Yes Yes 5 6 1 2
R:R:F319 R:R:H248 9.05 1 Yes Yes 5 5 1 1
L:L:M14 R:R:H248 3.94 1 Yes Yes 0 5 0 1
R:R:W312 R:R:Y315 7.72 1 Yes Yes 8 6 2 1
R:R:A345 R:R:W312 7.78 1 No Yes 8 8 2 2
R:R:H316 R:R:Y315 7.62 0 No Yes 7 6 2 1
R:R:F319 R:R:Y315 7.22 1 Yes Yes 5 6 1 1
R:R:F342 R:R:Y315 4.13 1 Yes Yes 6 6 2 1
R:R:A345 R:R:Y315 5.34 1 No Yes 8 6 2 1
L:L:M14 R:R:Y315 7.18 1 Yes Yes 0 6 0 1
R:R:F319 R:R:Y318 9.28 1 Yes Yes 5 4 1 2
R:R:T322 R:R:Y318 6.24 0 No Yes 4 4 2 2
R:R:I334 R:R:Y318 6.04 0 Yes Yes 3 4 1 2
R:R:Y318 R:R:Y338 11.91 1 Yes Yes 4 4 2 1
L:L:M14 R:R:F319 9.95 1 Yes Yes 0 5 0 1
R:R:N329 R:R:T322 7.31 0 No No 2 4 1 2
L:L:F11 R:R:N329 3.62 0 Yes No 0 2 0 1
L:L:D9 R:R:R330 9.53 0 No No 0 1 0 1
L:L:D8 R:R:K332 8.3 4 No No 0 1 0 1
L:L:F10 R:R:I334 3.77 0 No Yes 0 3 0 1
R:R:F342 R:R:Y338 13.41 1 Yes Yes 6 4 2 1
L:L:F10 R:R:Y338 6.19 0 No Yes 0 4 0 1
R:R:A215 R:R:I166 3.25 0 No Yes 7 4 2 1
R:R:I334 R:R:V337 3.07 0 Yes No 3 5 1 2
L:L:G12 R:R:Y338 2.9 0 No Yes 0 4 0 1
R:R:S341 R:R:Y318 2.54 1 No Yes 6 4 2 2
R:R:S341 R:R:Y338 2.54 1 No Yes 6 4 2 1
R:R:I334 R:R:W331 2.35 0 Yes No 3 1 1 2
R:R:L232 R:R:M227 1.41 0 No No 3 1 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8JBF_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.49
Number of Linked Nodes 262
Number of Links 304
Number of Hubs 45
Number of Links mediated by Hubs 159
Number of Communities 8
Number of Nodes involved in Communities 57
Number of Links involved in Communities 81
Path Summary
Number Of Nodes in MetaPath 124
Number Of Links MetaPath 123
Number of Shortest Paths 50191
Length Of Smallest Path 3
Average Path Length 12.3432
Length of Longest Path 28
Minimum Path Strength 1.145
Average Path Strength 6.3923
Maximum Path Strength 16.73
Minimum Path Correlation 0.7
Average Path Correlation 0.923646
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 48.4414
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.6734
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP29371
Sequence
>8JBF_nogp_Chain_R
NQFVQPSWR IALWSLAYG VVVAVAVLG NLIVIWIIL AHKRMRTVT 
NYFLVNLAF SDASMAAFN TLVNFIYAL HSEWYFGAN YCRFQNFFP 
ITAVFASIY SMTAIAVDR YMAIIDPLK PRLSATATK IVIGSIWIL 
AFLLAFPQC LYSKTKVMP GRTLCFVQW PEGPKQHFT YHIIVIILV 
YCFPLLIMG ITYTIVGIT LWGEQLKAK RKVVKMMII VVMTFAICW 
LPYHIYFIL TAIYQQLNR WKYIQQVYL ASFWLAMSS TMYNPIIYC 
CLNKRFRAG FKR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8JBFAPeptideTachykininNK3Homo sapiensSenktide-chim(NtGi1-Gs-CtGq)/β1/γ232024-02-28doi.org/10.1038/s41421-023-00564-w
8JBF (No Gprot) APeptideTachykininNK3Homo sapiensSenktide-32024-02-28doi.org/10.1038/s41421-023-00564-w
8JBGAPeptideTachykininNK3Homo sapiensNeurokinin-B-chim(NtGi1-Gs-CtGq)/β1/γ22.82024-02-07doi.org/10.1038/s41421-023-00564-w
8JBG (No Gprot) APeptideTachykininNK3Homo sapiensNeurokinin-B-2.82024-02-07doi.org/10.1038/s41421-023-00564-w
8JBHAPeptideTachykininNK3Homo sapiensSubstance-P-chim(NtGi1-Gs-CtGq)/β1/γ22.92024-02-07doi.org/10.1038/s41421-023-00564-w
8JBH (No Gprot) APeptideTachykininNK3Homo sapiensSubstance-P-2.92024-02-07doi.org/10.1038/s41421-023-00564-w




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Download 8JBF_nogp.zip



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