Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 10.261240
2R:R:V48 3.2725409
3R:R:Y64 6.52833608
4R:R:D72 6.93429
5R:R:F75 6.405406
6R:R:F78 4.52416
7R:R:R82 6.00667614
8R:R:R95 5.08407
9R:R:M102 5.7075414
10R:R:F104 7.218515
11R:R:Y106 7.92408
12R:R:T108 7.68417
13R:R:L113 6.8225429
14R:R:Y130 9.474537
15R:R:R134 7.68538
16R:R:W147 7.73419
17R:R:W172 10.3725471
18R:R:W183 10.15405
19R:R:S194 3.6875408
20R:R:F225 8.036509
21R:R:Y240 9.14667644
22R:R:Y250 5.4325403
23R:R:Y254 6.8275403
24R:R:N268 7.132529
25R:R:Y272 6529
26R:R:F273 8.35457
27R:R:F274 3.57407
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R95 32.99112.38YesYes007
2R:R:R82 R:R:R95 36.2194.26YesYes047
3R:R:Q79 R:R:R82 29.8713.5NoYes164
4R:R:M258 R:R:Q79 56.20519.52NoNo046
5R:R:L255 R:R:M258 35.84062.83NoNo034
6L:L:?1 R:R:V99 30.80559.11YesNo005
7R:R:R82 R:R:V99 31.71676.54YesNo045
8L:L:?1 R:R:Y254 84.40037.17YesYes003
9R:R:R82 R:R:Y254 34.57418.23YesYes043
10R:R:F30 R:R:L255 25.39197.31NoNo053
11R:R:F30 R:R:Q26 14.07839.37NoNo052
12R:R:H252 R:R:Q26 11.76924.95NoNo012
13R:R:M258 R:R:T34 20.86659.03NoNo047
14R:R:L83 R:R:T34 16.34884.42NoNo067
15R:R:M102 R:R:R82 72.59257.44YesYes144
16R:R:F75 R:R:M102 81.50446.22YesYes064
17R:R:F75 R:R:S265 1007.93YesNo069
18R:R:L76 R:R:S265 40.02636.01NoNo079
19R:R:L76 R:R:S262 36.7753NoNo076
20R:R:I37 R:R:S262 16.94344.64NoNo076
21R:R:F232 R:R:Y254 59.14747.22NoYes063
22R:R:F232 R:R:Y106 45.818210.32NoYes068
23R:R:F75 R:R:Y106 27.12956.19YesYes068
24R:R:F232 R:R:S261 14.54949.25NoNo068
25R:R:F75 R:R:S261 15.21355.28YesNo068
26R:R:S262 R:R:S38 16.94344.89NoNo065
27R:R:I80 R:R:S38 13.58414.64NoNo075
28R:R:I37 R:R:S266 10.20933.1NoNo078
29R:R:D72 R:R:S265 80.42328.83YesNo099
30R:R:D72 R:R:N45 53.95016.73YesNo099
31R:R:N45 R:R:P269 50.899711.4NoNo099
32R:R:P269 R:R:V48 47.83383.53NoYes099
33R:R:F274 R:R:V48 19.54592.62YesYes079
34R:R:F273 R:R:V48 22.75085.24YesYes079
35R:R:L110 R:R:Y106 43.93399.38NoYes078
36R:R:F225 R:R:L110 43.6259.74YesNo097
37R:R:F225 R:R:L113 41.9266.09YesYes099
38R:R:L113 R:R:Y272 29.1764.69YesYes299
39R:R:I116 R:R:Y272 57.62618.46NoYes089
40R:R:I116 R:R:Y64 46.19663.63NoYes088
41R:R:S139 R:R:Y64 16.36426.36NoYes098
42R:R:I63 R:R:S139 14.79659.29NoNo079
43R:R:I63 R:R:R58 13.21345.01NoNo076
44R:R:E119 R:R:Y64 29.106511.22NoYes088
45R:R:E119 R:R:Y130 12.410212.35NoYes387
46R:R:F78 R:R:M102 38.9763.73YesYes164
47R:R:F78 R:R:P105 27.60064.33YesNo168
48R:R:F104 R:R:P105 26.59667.22YesNo158
49R:R:F104 R:R:W147 15.05146.01YesYes159
50R:R:M112 R:R:W147 12.11683.49NoYes179
51R:R:L146 R:R:M112 12.76554.24NoNo067
52R:R:L146 R:R:V142 11.42174.47NoNo067
53R:R:V142 R:R:Y64 11.15928.83NoYes078
54R:R:D72 R:R:N268 44.58266.73YesYes299
55R:R:F78 R:R:V101 11.363.93YesNo065
56L:L:?1 R:R:F107 39.64015.79YesNo006
57R:R:F107 R:R:W183 32.72843.01NoYes065
58R:R:L187 R:R:W183 11.043312.53NoYes085
59R:R:F225 R:R:L191 28.859417.05YesNo098
60R:R:L191 R:R:S117 26.89786.01NoNo089
61R:R:S117 R:R:S194 20.92054.89NoYes098
62R:R:I116 R:R:R120 20.41083.76NoNo089
63R:R:I218 R:R:R120 19.02083.76NoNo089
64R:R:I218 R:R:L198 16.07072.85NoNo088
65R:R:L198 R:R:V124 14.66525.96NoNo088
66R:R:E119 R:R:R134 15.39895.82NoYes388
67R:R:R133 R:R:W129 12.87369NoNo044
68R:R:F153 R:R:W183 14.696118.04NoYes045
69L:L:?1 R:R:Y240 55.24758.76YesYes404
70R:R:E157 R:R:Y240 34.89843.37NoYes054
71R:R:E157 R:R:H243 31.33833.69NoNo052
72R:R:H243 R:R:T175 27.72412.74NoNo024
73R:R:R159 R:R:T175 24.35712.59NoNo034
74R:R:R159 R:R:W172 17.306411NoYes731
75R:R:D162 R:R:W172 10.518213.4NoYes021
76L:L:?1 R:R:P180 13.77716.69YesNo405
77R:R:I179 R:R:P180 10.79625.08NoNo055
78R:R:V181 R:R:Y240 10.7735.05NoYes044
79R:R:I202 R:R:V124 13.07441.54NoNo078
80R:R:I202 R:R:L203 10.02392.85NoNo074
81R:R:N264 R:R:N268 10.48732.72NoYes099
82L:L:?1 R:R:I239 25.36887.76YesNo004
83R:R:I239 R:R:Y250 21.76233.63NoYes043
84R:R:E247 R:R:Y250 11.04332.24NoYes013
85R:R:N268 R:R:Y272 31.45426.98YesYes299
86R:R:M102 R:R:Q79 28.33425.44YesNo146
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:R95 12.38 4 Yes Yes 0 7 0 1
L:L:?1 R:R:K96 8.62 4 Yes No 0 5 0 1
L:L:?1 R:R:V99 9.11 4 Yes No 0 5 0 1
L:L:?1 R:R:T103 5.01 4 Yes No 0 4 0 1
L:L:?1 R:R:F107 5.79 4 Yes No 0 6 0 1
L:L:?1 R:R:L156 31.97 4 Yes No 0 7 0 1
L:L:?1 R:R:P180 6.69 4 Yes No 0 5 0 1
L:L:?1 R:R:G236 10.46 4 Yes No 0 4 0 1
L:L:?1 R:R:I239 7.76 4 Yes No 0 4 0 1
L:L:?1 R:R:Y240 8.76 4 Yes Yes 0 4 0 1
L:L:?1 R:R:L246 9.4 4 Yes No 0 1 0 1
L:L:?1 R:R:Y254 7.17 4 Yes Yes 0 3 0 1
R:R:R82 R:R:R95 4.26 1 Yes Yes 4 7 2 1
R:R:R82 R:R:V99 6.54 1 Yes No 4 5 2 1
R:R:R82 R:R:Y254 8.23 1 Yes Yes 4 3 2 1
R:R:L156 R:R:Y240 18.76 4 No Yes 7 4 1 1
R:R:E157 R:R:Y240 3.37 0 No Yes 5 4 2 1
R:R:I179 R:R:P180 5.08 0 No No 5 5 2 1
R:R:P180 R:R:Y240 5.56 4 No Yes 5 4 1 1
R:R:V181 R:R:Y240 5.05 0 No Yes 4 4 2 1
R:R:F232 R:R:Y254 7.22 0 No Yes 6 3 2 1
R:R:L235 R:R:Y254 4.69 0 No Yes 3 3 2 1
R:R:I239 R:R:Y250 3.63 0 No Yes 4 3 1 2
R:R:R241 R:R:Y240 13.38 0 No Yes 3 4 2 1
R:R:F107 R:R:W183 3.01 0 No Yes 6 5 1 2
R:R:F107 R:R:L184 2.44 0 No No 6 7 1 2
R:R:L85 R:R:R95 2.43 0 No Yes 4 7 2 1
R:R:I90 R:R:R95 1.25 0 No Yes 3 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8K4S_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.37
Number of Linked Nodes 230
Number of Links 250
Number of Hubs 27
Number of Links mediated by Hubs 108
Number of Communities 7
Number of Nodes involved in Communities 38
Number of Links involved in Communities 48
Path Summary
Number Of Nodes in MetaPath 87
Number Of Links MetaPath 86
Number of Shortest Paths 36704
Length Of Smallest Path 3
Average Path Length 11.9566
Length of Longest Path 28
Minimum Path Strength 1.25
Average Path Strength 6.51127
Maximum Path Strength 22.175
Minimum Path Correlation 0.7
Average Path Correlation 0.928144
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 53.6211
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.0546
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeJW0
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeJW0
Name(4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},12~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-12-oxidanyl-3-phosphonooxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid
Synonyms
Identifier
FormulaC24 H41 O7 P
Molecular Weight472.552
SMILES
PubChem172408416
Formal Charge0
Total Atoms73
Total Chiral Atoms10
Total Bonds76
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ96LA9
Sequence
>8K4S_nogp_Chain_R
PCYNQTLSF TVLTCIISL VGLTGNAVV LWLLGYRMR RNAVSIYIL 
NLAAADFLF LSFQIIRLP LRLINISHL IRKILVSVM TFPYFTGLS 
MLSAISTER CLSVLWPIW YRCRRPTHL SAVVCVLLW GLSLLFSML 
EWRFCDFLF SSWCETSDF IPVAWLIFL CVVLCVSSL VLLVRILCG 
SRKMPLTRL YVTILLTVL VFLLCGLPF GILGALIYR MHLNLEVLY 
CHVYLVCMS LSSLNSSAN PIIYFFVGS FRQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7S8PAOrphanOrphanMRGPRX4Homo sapiensMS47134-chim(NtGi2L-Gs-CtGq)/β1/γ22.62021-11-17doi.org/10.1038/s41586-021-04126-6
7S8P (No Gprot) AOrphanOrphanMRGPRX4Homo sapiensMS47134-2.62021-11-17doi.org/10.1038/s41586-021-04126-6
8YRGAOrphanOrphanMRGPRX4Homo sapiensFospropofol-chim(NtGi1-Gs-CtGq)/β1/γ23.142024-05-22doi.org/10.1126/scitranslmed.adk8198
8YRG (No Gprot) AOrphanOrphanMRGPRX4Homo sapiensFospropofol-3.142024-05-22doi.org/10.1126/scitranslmed.adk8198
8K4SAOrphanOrphanMRGPRX4Homo sapiensDCA-3P-chim(NtGi1L-Gs-CtGq)/β1/γ22.92024-11-06doi.org/10.1016/j.cell.2024.10.001
8K4S (No Gprot) AOrphanOrphanMRGPRX4Homo sapiensDCA-3P-2.92024-11-06doi.org/10.1016/j.cell.2024.10.001
8KEXAOrphanOrphanMRGPRX4Homo sapiensDCA-3P--3.22024-11-06doi.org/10.1016/j.cell.2024.10.001




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Download 8K4S_nogp.zip



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