Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 10.3057710
2R:R:F30 10.114515
3R:R:T34 6.9525417
4R:R:I37 2.275407
5R:R:V48 3.3025409
6R:R:L51 4.6775407
7R:R:L52 4.055407
8R:R:Y64 6.086508
9R:R:D72 8.67439
10R:R:Q79 6.94416
11R:R:R82 8.516514
12R:R:R95 4.665417
13R:R:M102 5.47414
14R:R:T108 5.9825407
15R:R:L125 4.605467
16R:R:Y130 5.56667647
17R:R:R134 4.485448
18R:R:C143 3.115457
19R:R:E157 6.6775415
20R:R:W158 6.58286713
21R:R:D177 9.6625424
22R:R:W183 7.4775405
23R:R:L184 3.5575407
24R:R:C188 2.6475406
25R:R:I218 3.3225408
26R:R:V222 2.2975478
27R:R:F232 9.59416
28R:R:L235 5.666513
29R:R:I239 6.7414
30R:R:R241 10.0575423
31R:R:Y254 4.9075413
32R:R:M258 6.12167614
33R:R:N268 7.1575439
34R:R:Y272 5.1325409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:M258 R:R:Y254 47.39515.99YesYes143
2R:R:F30 R:R:M258 28.86227.46YesYes154
3L:L:?1 R:R:R82 14.22768.24YesYes104
4R:R:Q79 R:R:R82 28.74165.84YesYes164
5R:R:Q79 R:R:T34 60.46194.25YesYes167
6R:R:S262 R:R:T34 94.13894.8NoYes067
7R:R:S262 R:R:S38 96.65043.26NoNo065
8R:R:L76 R:R:S38 98.56794.5NoNo075
9R:R:L76 R:R:S265 99.725610.51NoNo079
10R:R:D72 R:R:S265 10011.78YesNo099
11R:R:D72 R:R:N45 10.621713.46YesNo099
12R:R:L52 R:R:V48 12.48492.98YesYes079
13R:R:D72 R:R:L68 45.362.71YesNo399
14R:R:L113 R:R:L68 45.17315.54NoNo399
15R:R:L113 R:R:Y272 90.3257.03NoYes099
16R:R:I116 R:R:Y272 85.56443.63NoYes089
17R:R:I116 R:R:Y64 89.714.84NoYes088
18R:R:D72 R:R:N268 46.3676.73YesYes399
19R:R:L113 R:R:N268 45.80628.24NoYes399
20R:R:E119 R:R:Y64 18.59328.98NoYes088
21R:R:E119 R:R:Y130 17.64956.73NoYes087
22R:R:C143 R:R:Y64 71.94592.69YesYes078
23R:R:C143 R:R:N67 69.12694.72YesNo579
24R:R:N67 R:R:W147 68.43644.52NoNo099
25R:R:T108 R:R:W147 67.54412.13YesNo079
26R:R:S150 R:R:T108 64.83064.8NoYes087
27R:R:W158 R:R:Y254 24.90964.82YesYes133
28R:R:F107 R:R:S150 57.32932.64NoNo068
29R:R:F107 R:R:L184 54.41696.09NoYes067
30R:R:L184 R:R:W183 20.79112.28YesYes075
31R:R:L184 R:R:L230 34.69614.15YesNo075
32R:R:C188 R:R:L230 32.49523.17YesNo065
33R:R:C188 R:R:F225 29.14864.19YesNo069
34R:R:F225 R:R:L191 28.02115.83NoNo098
35R:R:L191 R:R:V222 21.12882.98NoYes088
36R:R:S195 R:R:V222 17.58623.23NoYes088
37R:R:I218 R:R:S195 16.38934.64YesNo088
38R:R:I218 R:R:L214 10.79354.28YesNo087
39R:R:L235 R:R:Y254 22.36793.52YesYes133
40R:R:I239 R:R:L235 14.48084.28YesYes143
41R:R:I239 R:R:Y240 31.59677.25YesNo044
42R:R:R159 R:R:Y240 27.502415.43NoNo034
43R:R:D177 R:R:R159 12.029710.72YesNo243
44R:R:I239 R:R:W158 20.9611.74YesYes143
45R:R:R159 R:R:R241 11.58658.53NoYes233
46R:R:F30 R:R:T34 32.688115.56YesYes157
47R:R:M258 R:R:Q79 28.298413.59YesYes146
48R:R:V99 R:R:W158 12.26786.13NoYes053
49R:R:R82 R:R:V99 13.00655.23YesNo045
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:R82 8.24 1 Yes Yes 0 4 0 1
L:L:?1 R:R:R86 8.24 1 Yes No 0 3 0 1
L:L:?1 R:R:H92 4.36 1 Yes No 0 6 0 1
L:L:?1 R:R:R95 7.55 1 Yes Yes 0 7 0 1
L:L:?1 R:R:K96 15.93 1 Yes No 0 5 0 1
L:L:?1 R:R:Y250 22.52 1 Yes No 0 3 0 1
L:L:?1 R:R:Y254 5.3 1 Yes Yes 0 3 0 1
R:R:R86 R:R:T27 16.82 1 No No 3 2 1 2
R:R:Q79 R:R:R82 5.84 1 Yes Yes 6 4 2 1
R:R:M102 R:R:Q79 4.08 1 Yes Yes 4 6 2 2
R:R:M258 R:R:Q79 13.59 1 Yes Yes 4 6 2 2
R:R:L98 R:R:R82 14.58 0 No Yes 4 4 2 1
R:R:R82 R:R:V99 5.23 1 Yes No 4 5 1 2
R:R:M102 R:R:R82 8.69 1 Yes Yes 4 4 2 1
R:R:I90 R:R:L85 14.27 1 No No 3 4 2 2
R:R:L85 R:R:R95 3.64 1 No Yes 4 7 2 1
R:R:R86 R:R:Y250 7.2 1 No No 3 3 1 1
R:R:I90 R:R:R95 6.26 1 No Yes 3 7 2 1
R:R:V99 R:R:W158 6.13 0 No Yes 5 3 2 2
R:R:M102 R:R:M258 2.89 1 Yes Yes 4 4 2 2
R:R:L235 R:R:W158 6.83 1 Yes Yes 3 3 2 2
R:R:W158 R:R:Y254 4.82 1 Yes Yes 3 3 2 1
R:R:L235 R:R:Y254 3.52 1 Yes Yes 3 3 2 1
R:R:M258 R:R:Y254 5.99 1 Yes Yes 4 3 2 1
R:R:C251 R:R:Y250 1.34 0 No No 2 3 2 1
R:R:N89 R:R:R95 1.21 0 No Yes 3 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8YRG_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.69
Number of Linked Nodes 215
Number of Links 242
Number of Hubs 34
Number of Links mediated by Hubs 125
Number of Communities 7
Number of Nodes involved in Communities 48
Number of Links involved in Communities 66
Path Summary
Number Of Nodes in MetaPath 50
Number Of Links MetaPath 49
Number of Shortest Paths 46228
Length Of Smallest Path 3
Average Path Length 19.5348
Length of Longest Path 42
Minimum Path Strength 1.405
Average Path Strength 6.19737
Maximum Path Strength 19.225
Minimum Path Correlation 0.7
Average Path Correlation 0.921494
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.63158
Average % Of Corr. Nodes 36.8185
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.9523
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1L
Name[2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide
Synonyms
Identifier
FormulaC24 H31 N9 O3
Molecular Weight493.561
SMILES
PubChem44129754
Formal Charge0
Total Atoms67
Total Chiral Atoms1
Total Bonds68
Total Aromatic Bonds12

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ96LA9
Sequence
>8YRG_nogp_Chain_R
QTLSFTVLT CIISLVGLT GNAVVLWLL GYRMRRNAV SIYILNLAA 
ADFLFLSFQ IIRPLRLIN ISHLIRKIL VSVMTFPYF TGLSMLSAI 
STERCLSVL WPIWYRCRR PTHLSAVVC VLLWGLSLL FSMLEWRFT 
SDFIPVAWL IFLCVVLCV SSLVLLVRI LCGSRKMPL TRLYVTILL 
TVLVFLLCG LPFGILGAL IYRMHLNLE VLYCHVYLV CMSLSSLNS 
SANPIIYFF VGS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8KEXAOrphanOrphanMRGPRX4Homo sapiensDCA-3P--3.22024-11-06doi.org/10.1016/j.cell.2024.10.001
8K4SAOrphanOrphanMRGPRX4Homo sapiensDCA-3P-chim(NtGi1L-Gs-CtGq)/β1/γ22.92024-11-06doi.org/10.1016/j.cell.2024.10.001
8K4S (No Gprot) AOrphanOrphanMRGPRX4Homo sapiensDCA-3P-2.92024-11-06doi.org/10.1016/j.cell.2024.10.001
8YRGAOrphanOrphanMRGPRX4Homo sapiensFospropofol-chim(NtGi1-Gs-CtGq)/β1/γ23.142024-05-2210.1126/scitranslmed.adk8198
8YRG (No Gprot) AOrphanOrphanMRGPRX4Homo sapiensFospropofol-3.142024-05-2210.1126/scitranslmed.adk8198
7S8PAOrphanOrphanMRGPRX4Homo sapiensMS47134-chim(NtGi2L-Gs-CtGq)/β1/γ22.62021-11-1710.1038/s41586-021-04126-6
7S8P (No Gprot) AOrphanOrphanMRGPRX4Homo sapiensMS47134-2.62021-11-1710.1038/s41586-021-04126-6




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Download 8YRG_nogp.zip



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