Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F11 6.1725409
2R:R:L26 3.34426
3R:R:F30 5.3406
4R:R:Y34 8.645408
5R:R:N41 4.508509
6R:R:L54 6.6875409
7R:R:Y59 6.08167609
8R:R:D69 5.69419
9R:R:Y72 4.872515
10R:R:I91 3.642549
11R:R:Q99 3.2449
12R:R:F101 6.842513
13R:R:H104 4.985614
14R:R:F105 5.145413
15R:R:E110 3.86618
16R:R:M111 5.6415
17R:R:Y131 5.424579
18R:R:V144 4.8825485
19R:R:W148 4.02605
20R:R:F152 5.81413
21R:R:H154 5.5275414
22R:R:Q158 6.98514
23R:R:F167 3.19736
24R:R:F176 5.35167666
25R:R:F177 5.2575465
26R:R:D179 6.22418
27R:R:L180 4.486515
28R:R:N201 8.1075413
29R:R:S202 4.834513
30R:R:Y217 5.4075499
31R:R:H242 4.69599
32R:R:F249 5.905416
33R:R:F250 5.255616
34R:R:Y257 6.39833617
35R:R:F261 3.0375404
36R:R:F264 4.58254103
37R:R:Y274 3.59517
38R:R:N282 5.2175419
39L:L:?1 6.645810
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F167 R:R:F93 13.69693.22YesNo364
2R:R:F11 R:R:I173 13.20078.79YesNo097
3R:R:I173 R:R:L13 15.52232.85NoNo078
4R:R:I91 R:R:L13 11.21832.85YesNo098
5R:R:F93 R:R:M97 16.28186.22NoNo045
6R:R:I162 R:R:M97 21.13274.37NoNo055
7R:R:I100 R:R:I162 20.124.42NoNo155
8R:R:H104 R:R:I100 22.48722.65YesNo145
9R:R:H104 R:R:L103 11.78035.14YesNo144
10R:R:L103 R:R:Y72 11.96775.86NoYes145
11R:R:F249 R:R:Y72 60.25623.09YesYes165
12R:R:E110 R:R:F249 1004.66YesYes186
13R:R:D69 R:R:E110 48.32655.2YesYes198
14R:R:D69 R:R:N41 58.86634.04YesYes099
15R:R:N41 R:R:T37 44.622.92YesNo097
16R:R:L280 R:R:T37 43.21742.95NoNo067
17R:R:F33 R:R:L280 41.41482.44NoNo056
18R:R:F33 R:R:V276 38.67282.62NoNo055
19R:R:F30 R:R:V276 37.74872.62YesNo065
20R:R:F30 R:R:L26 15.0974.87YesYes066
21L:L:?1 R:R:H104 27.02929.37YesYes104
22L:L:?1 R:R:Y72 33.31058.54YesYes105
23L:L:?1 R:R:M111 38.80964.12YesYes105
24R:R:F249 R:R:M111 35.86266.22YesYes165
25R:R:F176 R:R:M80 13.00078.71YesNo066
26R:R:F30 R:R:M80 14.051311.2YesNo066
27R:R:E110 R:R:N282 30.70283.94YesYes189
28R:R:E110 R:R:L65 32.94093.98YesNo189
29R:R:L65 R:R:M117 41.55912.83NoNo099
30R:R:L62 R:R:M117 34.36382.83NoNo099
31R:R:L62 R:R:M58 33.31562.83NoNo099
32R:R:M58 R:R:Y59 32.26243.59NoYes099
33R:R:L54 R:R:Y59 11.47919.38YesYes099
34R:R:S56 R:R:Y59 15.10715.09NoYes079
35R:R:P57 R:R:S56 13.96783.56NoNo097
36R:R:P57 R:R:Y131 11.6745.56NoYes099
37R:R:I173 R:R:P182 28.43943.39NoNo077
38R:R:P181 R:R:P182 29.68765.84NoNo047
39R:R:P181 R:R:Y257 28.57364.17NoYes147
40R:R:Y257 R:R:Y274 11.01833.97YesYes177
41L:L:?1 R:R:H154 11.33485.62YesYes104
42R:R:N282 R:R:Y286 34.7415.81YesNo099
43R:R:H242 R:R:Y286 33.67016.53YesNo099
44R:R:H242 R:R:Y217 21.88214.36YesYes999
45R:R:A235 R:R:L224 11.77271.58NoNo095
46R:R:A235 R:R:L221 12.92721.58NoNo095
47R:R:C239 R:R:L221 17.51233.17NoNo095
48R:R:C239 R:R:Y217 18.6444.03NoYes099
49R:R:I157 R:R:N201 13.14755.66NoYes043
50R:R:I157 R:R:L197 11.28414.28NoNo044
51R:R:F261 R:R:P260 13.82355.78YesNo047
52R:R:P260 R:R:V198 18.09711.77NoNo074
53R:R:Y274 R:R:Y72 15.16533.97YesYes175
54L:L:?1 R:R:Y257 20.598513.67YesYes107
55R:R:H104 R:R:Q158 14.16026.18YesYes144
56L:L:?1 R:R:S202 15.76794.38YesYes103
57R:R:Q158 R:R:V198 18.83394.3YesNo144
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:L103 R:R:Y72 5.86 1 No Yes 4 5 1 1
R:R:G107 R:R:Y72 2.9 0 No Yes 5 5 2 1
R:R:F249 R:R:Y72 3.09 1 Yes Yes 6 5 2 1
R:R:Y274 R:R:Y72 3.97 1 Yes Yes 7 5 1 1
L:L:?1 R:R:Y72 8.54 1 Yes Yes 0 5 0 1
R:R:H104 R:R:I100 2.65 1 Yes No 4 5 1 2
R:R:H104 R:R:L103 5.14 1 Yes No 4 4 1 1
L:L:?1 R:R:L103 4.04 1 Yes No 0 4 0 1
R:R:H104 R:R:S155 2.79 1 Yes No 4 5 1 2
R:R:H104 R:R:Q158 6.18 1 Yes Yes 4 4 1 2
R:R:D179 R:R:H104 3.78 1 Yes Yes 8 4 2 1
L:L:?1 R:R:H104 9.37 1 Yes Yes 0 4 0 1
R:R:G108 R:R:H154 4.77 0 No Yes 3 4 2 1
R:R:M111 R:R:S206 4.6 1 Yes No 5 3 1 2
R:R:F249 R:R:M111 6.22 1 Yes Yes 6 5 2 1
R:R:F250 R:R:M111 7.46 1 Yes Yes 6 5 2 1
L:L:?1 R:R:M111 4.12 1 Yes Yes 0 5 0 1
R:R:H154 R:R:N201 8.93 1 Yes Yes 4 3 1 2
R:R:H154 R:R:S202 2.79 1 Yes Yes 4 3 1 1
L:L:?1 R:R:H154 5.62 1 Yes Yes 0 4 0 1
R:R:N201 R:R:Q158 11.88 1 Yes Yes 3 4 2 2
R:R:Q158 R:R:S202 7.22 1 Yes Yes 4 3 2 1
R:R:D179 R:R:P181 8.05 1 Yes No 8 4 2 2
R:R:D179 R:R:Y257 10.34 1 Yes Yes 8 7 2 1
R:R:P181 R:R:Y257 4.17 1 No Yes 4 7 2 1
R:R:N201 R:R:S202 5.96 1 Yes Yes 3 3 2 1
R:R:S202 R:R:Y257 3.82 1 Yes Yes 3 7 1 1
L:L:?1 R:R:S202 4.38 1 Yes Yes 0 3 0 1
R:R:F249 R:R:F250 9.65 1 Yes Yes 6 6 2 2
R:R:P252 R:R:Y274 4.17 0 No Yes 7 7 2 1
R:R:Y257 R:R:Y274 3.97 1 Yes Yes 7 7 1 1
L:L:?1 R:R:Y257 13.67 1 Yes Yes 0 7 0 1
L:L:?1 R:R:Y274 3.42 1 Yes Yes 0 7 0 1
R:R:I256 R:R:Y257 2.42 1 No Yes 5 7 2 1
R:R:I256 R:R:Y274 2.42 1 No Yes 5 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8UYQ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.62
Number of Linked Nodes 279
Number of Links 316
Number of Hubs 39
Number of Links mediated by Hubs 148
Number of Communities 10
Number of Nodes involved in Communities 65
Number of Links involved in Communities 92
Path Summary
Number Of Nodes in MetaPath 58
Number Of Links MetaPath 57
Number of Shortest Paths 64071
Length Of Smallest Path 3
Average Path Length 14.2251
Length of Longest Path 29
Minimum Path Strength 1.295
Average Path Strength 4.48897
Maximum Path Strength 11.57
Minimum Path Correlation 0.7
Average Path Correlation 0.937002
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 52.4432
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.211
Maximum Path Hubs % 100

Details about the values in these tables can be found in the corresponding documentation page .
CodeXVT
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeXVT
Name(2R)-2-methyl-1,3-thiazolidine
Synonyms
Identifier
FormulaC4 H9 N S
Molecular Weight103.186
SMILES
PubChem6999028
Formal Charge0
Total Atoms15
Total Chiral Atoms1
Total Bonds15
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtCons
Sequence
>8UYQ_nogp_Chain_R
FPLTPHSNV TEFILLGLT QSPEQLFLF VVFLLFYVA TVGNLLIVV 
TVTSDPHLH SPMYFLANL SFIDICYSS VTAPKMIVD LLSERKTIS 
FNGCMTQIL HFFGGAEMF LLVVMAYDR YVAICKPLH YLTIMNRRV 
CVLLVAVAW VGGFLHSII QLAFIVQLF CGPNVIDSF FCDPPVLKL 
ACTDTYVLG LLVIANGIS CFLLLLISY VILVSLRSH SEGRKALTC 
SHTVVILFF GPCIFIYRP FTTFPMDKV AFYTVITLN PIYTLRNKE 
KAAMRKLWS RKVISSRKL LLFSLLLVS SSITFVLLM


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8UYQO2Odorant receptorsOdorant family 4consOR4Homo sapiens2-methylthiazoline-Gs/β1/γ23.52024-10-30doi.org/10.1038/s41586-024-08126-0
8UYQ (No Gprot) O2Odorant receptorsOdorant family 4consOR4Homo sapiens2-methylthiazoline-3.52024-10-30doi.org/10.1038/s41586-024-08126-0




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Download 8UYQ_nogp.zip



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