Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:R28 8.415477
2L:L:F47 6.7775419
3L:L:F60 2.815404
4L:L:F65 6.18754108
5L:L:L68 5.1225408
6L:L:F70 6.392506
7L:L:K71 6.048554
8L:L:Q73 5.4925457
9L:L:Q74 6.91167619
10L:L:T75 5.8375439
11L:L:R113 10.42407
12L:L:H116 5.4075448
13L:L:Q131 4.1575445
14L:L:H146 7.3454115
15L:L:F148 6.258501
16L:L:Y149 8.202525
17L:L:F150 8.536524
18L:L:Q153 7.445426
19L:L:F154 9.198526
20R:R:Y15 11.32418
21R:R:Y22 4.332545
22R:R:V32 5.6525403
23R:R:Y45 4.912508
24R:R:V59 2.49408
25R:R:F62 6.055407
26R:R:W75 6.065607
27R:R:D83 5.864139
28R:R:F86 6.35127
29R:R:F101 7.03167604
30R:R:W103 6.9409
31R:R:F105 5.46407
32R:R:Q118 6.1675405
33R:R:N120 5.0525408
34R:R:F122 4.421676156
35R:R:Y136 3.658507
36R:R:I140 4.54407
37R:R:H141 3.7825406
38R:R:W162 55149
39R:R:F175 6.295404
40R:R:Y188 7.6575423
41R:R:F191 6.966505
42R:R:F211 4.85254166
43R:R:P218 4.5775409
44R:R:I230 2.98404
45R:R:W259 7.328508
46R:R:C298 2.2275407
47R:R:F311 5.275408
48R:R:R314 7.775406
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:V110 L:L:V32 10.86544.81NoNo086
2L:L:G29 L:L:V32 15.66811.84NoNo066
3L:L:G29 L:L:V66 16.84411.84NoNo069
4L:L:L68 L:L:V66 18.01597.45YesNo089
5L:L:F70 L:L:L68 29.4847.31YesYes068
6L:L:E49 L:L:F70 45.078616.32NoYes066
7L:L:E49 L:L:L72 42.900913.25NoNo168
8L:L:I102 L:L:R113 75.54135.01NoYes057
9L:L:A100 L:L:I102 74.60893.25NoNo085
10L:L:A100 L:L:F70 73.67442.77NoYes086
11R:R:S23 R:R:Y21 12.05193.82NoNo053
12L:L:R113 R:R:S23 13.17545.27YesNo075
13L:L:F47 L:L:Q74 30.98978.2YesYes199
14L:L:F47 L:L:L72 41.95176.09YesNo198
15L:L:G93 L:L:Q74 25.09084.93NoYes069
16L:L:G93 L:L:K95 23.93791.74NoNo066
17L:L:K95 L:L:Q73 15.58629.49NoYes567
18L:L:Q73 L:L:V89 13.37282.87YesNo074
19L:L:Q48 L:L:V89 12.17795.73NoNo044
20L:L:Q48 L:L:T75 10.97889.92NoYes049
21L:L:R113 R:R:E25 94.9616.28YesNo077
22R:R:E25 R:R:N182 96.65685.26NoNo073
23R:R:K31 R:R:N182 97.49895.6NoNo013
24R:R:H184 R:R:K31 99.17057.86NoNo031
25R:R:H184 R:R:V32 1002.77NoYes033
26R:R:F101 R:R:V32 83.66415.24YesYes043
27L:L:F154 R:R:F101 56.481717.15YesYes064
28L:L:F154 L:L:Q153 34.48212.88YesYes266
29L:L:F150 L:L:Q153 34.42328.2YesYes246
30L:L:F150 L:L:R137 29.704510.69YesNo045
31L:L:Q134 L:L:R137 20.53593.5NoNo065
32L:L:Q134 R:R:Y22 19.42713.38NoYes065
33L:L:H116 R:R:Y22 17.32294.36YesYes485
34R:R:Q283 R:R:V32 24.27395.73NoYes033
35L:L:F154 R:R:Q283 24.32437.03YesNo063
36L:L:F154 L:L:Y149 43.03325.16YesYes265
37L:L:Y149 R:R:I272 23.77624.84YesNo052
38L:L:H146 R:R:I272 17.438410.61YesNo052
39L:L:D144 L:L:H146 30.12877.56NoYes1145
40L:L:D144 L:L:S147 28.11692.94NoNo043
41L:L:A141 L:L:S147 26.90523.42NoNo063
42L:L:A141 L:L:K103 24.59943.21NoNo069
43L:L:F65 L:L:K103 25.97913.72YesNo089
44L:L:F65 L:L:Q139 18.767714.05YesNo085
45L:L:F60 L:L:Q139 11.55212.34YesNo045
46L:L:Y149 R:R:H279 18.179714.16YesNo051
47L:L:H146 R:R:H279 17.12343.58YesNo051
48L:L:F150 R:R:Y188 15.025510.32YesYes243
49R:R:F101 R:R:Y96 92.08096.19YesNo046
50R:R:W103 R:R:Y96 86.18627.72YesNo096
51R:R:C110 R:R:W103 81.599810.45NoYes099
52R:R:C110 R:R:C187 90.51645.46NoNo099
53R:R:C187 R:R:R176 90.16365.57NoNo094
54R:R:N189 R:R:R176 89.466414.46NoNo044
55R:R:F191 R:R:N189 89.13673.62YesNo054
56L:L:F156 R:R:T290 78.52549.08NoNo096
57R:R:T290 R:R:Y93 79.1479.99NoNo066
58R:R:Y93 R:R:Y96 80.79342.98NoNo066
59L:L:F156 R:R:F86 77.08063.22NoYes1297
60R:R:F191 R:R:H203 85.17413.58YesNo054
61R:R:H203 R:R:H273 84.65534.78NoNo043
62R:R:H273 R:R:L200 83.60537.71NoNo032
63R:R:H204 R:R:L200 83.0746.43NoNo042
64R:R:H204 R:R:W208 80.90685.29NoNo044
65R:R:F211 R:R:W208 79.7984.01YesNo064
66R:R:F211 R:R:L216 75.78493.65YesNo064
67R:R:I212 R:R:L216 75.19484.28NoNo054
68R:R:I212 R:R:I213 74.60052.94NoNo054
69R:R:F122 R:R:I213 72.41023.77YesNo1564
70R:R:F122 R:R:M121 61.05763.73YesNo067
71R:R:M121 R:R:W259 60.39196.98NoYes078
72R:R:N296 R:R:W259 48.150913.56NoYes098
73R:R:N296 R:R:N300 45.85145.45NoNo099
74R:R:D83 R:R:N300 38.23478.08YesNo099
75R:R:D83 R:R:N56 36.04234.04YesNo099
76R:R:F84 R:R:N56 18.19234.83NoNo079
77R:R:F84 R:R:I53 15.42032.51NoNo076
78R:R:I53 R:R:P54 12.61055.08NoNo064
79R:R:G52 R:R:P54 10.71632.03NoNo084
80R:R:N56 R:R:P301 18.86436.52NoNo099
81R:R:P301 R:R:V59 17.96761.77NoYes098
82R:R:V305 R:R:V59 14.39343.21NoYes068
83R:R:F86 R:R:N120 78.21886.04YesYes078
84R:R:F311 R:R:V305 13.46313.93YesNo086
85R:R:L119 R:R:N120 74.06082.75NoYes058
86R:R:L119 R:R:W162 73.35313.42NoYes059
87R:R:N78 R:R:W162 66.01786.78NoYes1499
88R:R:I158 R:R:N78 66.045111.33NoNo079
89R:R:I158 R:R:W75 63.00434.7NoYes077
90R:R:V71 R:R:W75 30.41644.9NoYes067
91R:R:R149 R:R:V71 28.70285.23NoNo076
92R:R:D134 R:R:W75 29.48412.28NoYes087
93R:R:D134 R:R:R149 28.635610.72NoNo087
94R:R:C110 R:R:T178 14.90583.38NoNo095
95R:R:I107 R:R:T178 14.24853.04NoNo045
96R:R:D177 R:R:Y188 11.10274.6NoYes253
97R:R:F175 R:R:F191 18.51159.65YesYes045
98R:R:F255 R:R:W259 15.31118.02NoYes098
99R:R:F255 R:R:M222 12.52022.49NoNo098
100R:R:H138 R:R:R149 55.545122.57NoNo087
101R:R:H138 R:R:L139 51.95833.86NoNo088
102R:R:H135 R:R:L139 50.158510.29NoNo098
103R:R:H135 R:R:L229 39.11042.57NoNo097
104R:R:I140 R:R:L229 37.28972.85YesNo077
105R:R:H141 R:R:I140 18.78247.95YesYes067
106R:R:I140 R:R:K232 11.27285.82YesNo075
107R:R:F175 R:R:R202 12.01837.48YesNo041
108R:R:L198 R:R:R202 11.249710.93NoNo041
109R:R:D195 R:R:L198 10.55466.79NoNo024
110R:R:D177 R:R:I107 13.08932.8NoNo054
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:F37 R:R:Y21 10.32 0 No No 8 3 0 1
L:L:P42 R:R:D18 8.05 9 No No 5 6 0 1
L:L:V43 R:R:D18 5.84 9 No No 8 6 0 1
L:L:Q44 R:R:Y15 5.64 0 No Yes 5 8 0 1
L:L:W45 R:R:Y15 9.65 1 No Yes 4 8 0 1
L:L:Q74 R:R:Y15 7.89 1 Yes Yes 9 8 0 1
L:L:R94 R:R:Y17 6.17 1 No No 8 4 0 1
L:L:L111 R:R:L28 4.15 0 No No 8 2 0 1
L:L:G112 R:R:S26 3.71 0 No No 5 4 0 1
L:L:R113 R:R:S23 5.27 0 Yes No 7 5 0 1
L:L:R113 R:R:E25 16.28 0 Yes No 7 7 0 1
L:L:L114 R:R:Y22 3.52 4 No Yes 7 5 0 1
L:L:L114 R:R:L24 4.15 4 No No 7 4 0 1
L:L:V115 R:R:Y21 6.31 0 No No 3 3 0 1
L:L:H116 R:R:Y22 4.36 4 Yes Yes 8 5 0 1
L:L:I119 R:R:Y17 8.46 0 No No 4 4 0 1
L:L:E129 R:R:H194 8.62 0 No No 3 3 0 1
L:L:T133 R:R:Q192 5.67 0 No No 4 4 0 1
L:L:Q134 R:R:Y22 3.38 0 No Yes 6 5 0 1
L:L:H146 R:R:I272 10.61 11 Yes No 5 2 0 1
L:L:H146 R:R:H279 3.58 11 Yes No 5 1 0 1
L:L:F148 R:R:L24 6.09 0 Yes No 1 4 0 1
L:L:F148 R:R:S26 6.61 0 Yes No 1 4 0 1
L:L:F148 R:R:E29 4.66 0 Yes No 1 6 0 1
L:L:F148 R:R:F181 9.65 0 Yes No 1 4 0 1
L:L:Y149 R:R:E269 13.47 2 Yes No 5 4 0 1
L:L:Y149 R:R:I272 4.84 2 Yes No 5 2 0 1
L:L:Y149 R:R:H279 14.16 2 Yes No 5 1 0 1
L:L:F150 R:R:V179 9.18 2 Yes No 4 1 0 1
L:L:F150 R:R:F181 4.29 2 Yes No 4 4 0 1
L:L:F150 R:R:Y188 10.32 2 Yes Yes 4 3 0 1
L:L:P151 R:R:F191 4.33 0 No Yes 9 5 0 1
L:L:Q153 R:R:L186 5.32 2 Yes No 6 3 0 1
L:L:F154 R:R:F101 17.15 2 Yes Yes 6 4 0 1
L:L:F154 R:R:Q283 7.03 2 Yes No 6 3 0 1
L:L:F154 R:R:I286 3.77 2 Yes No 6 4 0 1
L:L:F156 R:R:F86 3.22 12 No Yes 9 7 0 1
L:L:F156 R:R:A117 2.77 12 No No 9 6 0 1
L:L:F156 R:R:T290 9.08 12 No No 9 6 0 1
L:L:S157 R:R:Q118 11.55 0 No Yes 5 5 0 1
R:R:N14 R:R:Y15 22.1 0 No Yes 7 8 2 1
R:R:S23 R:R:Y21 3.82 0 No No 5 3 1 1
R:R:L24 R:R:Y22 7.03 4 No Yes 4 5 1 1
R:R:E180 R:R:Y22 3.37 0 No Yes 1 5 2 1
R:R:E25 R:R:N182 5.26 0 No No 7 3 1 2
R:R:F101 R:R:V32 5.24 0 Yes Yes 4 3 1 2
R:R:Q283 R:R:V32 5.73 0 No Yes 3 3 1 2
R:R:F101 R:R:H38 6.79 0 Yes No 4 5 1 2
R:R:A117 R:R:F86 2.77 12 No Yes 6 7 1 1
R:R:F86 R:R:N120 6.04 12 Yes Yes 7 8 1 2
R:R:F294 R:R:F86 12.86 0 No Yes 7 7 2 1
R:R:F86 R:R:S297 6.61 12 Yes No 7 8 1 2
R:R:Y93 R:R:Y96 2.98 0 No No 6 6 2 2
R:R:T290 R:R:Y93 9.99 0 No No 6 6 1 2
R:R:F101 R:R:Y96 6.19 0 Yes No 4 6 1 2
R:R:F101 R:R:V97 3.93 0 Yes No 4 5 1 2
R:R:F101 R:R:P287 2.89 0 Yes No 4 4 1 2
R:R:F122 R:R:Q118 3.51 15 Yes Yes 6 5 2 1
R:R:G169 R:R:Q118 6.58 0 No Yes 7 5 2 1
R:R:A172 R:R:Q118 3.03 0 No Yes 4 5 2 1
R:R:F175 R:R:F191 9.65 0 Yes Yes 4 5 2 1
R:R:D177 R:R:Y188 4.6 2 No Yes 5 3 2 1
R:R:D177 R:R:N190 5.39 2 No No 5 3 2 2
R:R:V179 R:R:Y188 7.57 2 No Yes 1 3 1 1
R:R:N190 R:R:Y188 8.14 2 No Yes 3 3 2 1
R:R:F191 R:R:N189 3.62 0 Yes No 5 4 1 2
R:R:K193 R:R:N190 9.79 0 No No 2 3 2 2
R:R:F191 R:R:H203 13.58 0 Yes No 5 4 1 2
R:R:F191 R:R:L206 3.65 0 Yes No 5 5 1 2
R:R:H194 R:R:K193 3.93 0 No No 3 2 1 2
R:R:E269 R:R:M282 9.47 0 No No 4 4 1 2
R:R:I286 R:R:P287 3.39 0 No No 4 4 1 2
L:L:V43 R:R:Y17 2.52 9 No No 8 4 0 1
L:L:A155 R:R:I286 1.62 0 No No 9 4 0 1
L:L:P118 R:R:D20 1.61 0 No No 7 2 0 1
R:R:P196 R:R:Q192 1.58 0 No No 1 4 2 1
R:R:I272 R:R:S276 1.55 0 No No 2 3 1 2
R:R:D20 R:R:L19 1.36 0 No No 2 3 1 2
L:L:L136 R:R:Q192 1.33 0 No No 3 4 0 1
R:R:D27 R:R:E25 1.3 0 No No 4 7 2 1
R:R:H280 R:R:Q283 1.24 0 No No 3 3 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XGM_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.77
Number of Linked Nodes 418
Number of Links 461
Number of Hubs 48
Number of Links mediated by Hubs 192
Number of Communities 16
Number of Nodes involved in Communities 66
Number of Links involved in Communities 74
Path Summary
Number Of Nodes in MetaPath 111
Number Of Links MetaPath 110
Number of Shortest Paths 124286
Length Of Smallest Path 3
Average Path Length 23.1645
Length of Longest Path 55
Minimum Path Strength 1.24
Average Path Strength 6.48652
Maximum Path Strength 16.645
Minimum Path Correlation 0.7
Average Path Correlation 0.962922
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 2.22222
Average % Of Corr. Nodes 56.5907
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 31.3189
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainL
ProteinChemerin
UniProtQ99969
Sequence
>8XGM_nogp_Chain_L
ELTEAQRRG LQVALEEFH KHPPVQWAF QETSVESAV DTPFPAGIF 
VRLEFKLQQ TSCRKRDWK KPECKVRPN GRKRKCLAC IKLGSEDKV 
LGRLVHCPI ETQVLREAE EHQETQCLR VQRAGEDPH SFYFPGQFA 
FS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainR
ProteinReceptor
UniProtP46091
Sequence
>8XGM_nogp_Chain_R
NYSYDLDYY SLESDLEEK VQLGVVHWV SLVLYCLAF VLGIPGNAI 
VIWFTGFKW KKTVTTLWF LNLAIADFI FLLFLPLYI SYVAMNFHW 
PFGIWLCKA NSFTAQLNM FASVFFLTV ISLDHYIHL IHPVLSHRH 
RTLKNSLIV IIFIWLLAS LIGGPALYF RDTVEFNNH TLCYNNFQK 
HDPDLTLIR HHVLTWVKF IIGYLFPLL TMSICYLCL IFKVKKRSI 
LISSRHFWT ILVVVVAFV VCWTPYHLF SIWELTIHH NSYSHHVMQ 
AGIPLSTGL AFLNSCLNP ILYVLISKK FQARFRSSV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8JJPAProteinChemerinCML2Homo sapiensChemerin-9-Gi1/β1/γ22.92024-08-21doi.org/10.1371/journal.pbio.3002838
8JJP (No Gprot) AProteinChemerinCML2Homo sapiensChemerin-9-2.92024-08-21doi.org/10.1371/journal.pbio.3002838
8XGMAProteinChemerinCML2Homo sapiensChemerin-Gi1/β1/γ23.292024-08-21doi.org/10.1371/journal.pbio.3002838
8XGM (No Gprot) AProteinChemerinCML2Homo sapiensChemerin-3.292024-08-21doi.org/10.1371/journal.pbio.3002838
9L3YAProteinChemerinCML2Homo sapiensChemerin-Gi1/β1/γ23.62025-03-12doi.org/10.1093/procel/pwae073
9L3Y (No Gprot) AProteinChemerinCML2Homo sapiensChemerin-3.62025-03-12doi.org/10.1093/procel/pwae073
9UYHAProteinChemerinCML2Homo sapiensChemerin-9-Arrestin23.32025-11-1910.1126/science.adt8794
9UYH (No Gprot) AProteinChemerinCML2Homo sapiensChemerin-9-3.32025-11-1910.1126/science.adt8794
9UYIAProteinChemerinCML2Homo sapiensChemerin-9-Arrestin23.22025-11-1910.1126/science.adt8794
9UYI (No Gprot) AProteinChemerinCML2Homo sapiensChemerin-9-3.22025-11-1910.1126/science.adt8794
9UYJAProteinChemerinCML2Homo sapiensChemerin-9-Arrestin23.32025-11-1910.1126/science.adt8794
9UYJ (No Gprot) AProteinChemerinCML2Homo sapiensChemerin-9-3.32025-11-1910.1126/science.adt8794
9UYLAProteinChemerinCML2Homo sapiensChemerin-9-Arrestin23.32025-11-1910.1126/science.adt8794
9UYL (No Gprot) AProteinChemerinCML2Homo sapiensChemerin-9-3.32025-11-1910.1126/science.adt8794
9UYMAProteinChemerinCML2Homo sapiensChemerin-9-chim(Arrestin3-CtArrestin2)3.52025-11-1910.1126/science.adt8794
9UYM (No Gprot) AProteinChemerinCML2Homo sapiensChemerin-9-3.52025-11-1910.1126/science.adt8794
9UYNAProteinChemerinCML2Homo sapiens--Arrestin22.92025-11-1910.1126/science.adt8794
9UYN (No Gprot) AProteinChemerinCML2Homo sapiens--2.92025-11-1910.1126/science.adt8794




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XGM_nogp.zip



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