Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:R8 8.415470
2L:L:F27 6.7775410
3L:L:F40 2.815400
4L:L:F45 6.18754100
5L:L:L48 5.1225400
6L:L:F50 6.392500
7L:L:K51 6.048550
8L:L:Q53 5.4925450
9L:L:Q54 6.91167610
10L:L:T55 5.8375430
11L:L:R93 10.42400
12L:L:H96 5.4075440
13L:L:Q111 4.1575440
14L:L:H126 7.3454110
15L:L:F128 6.258500
16L:L:Y129 8.202520
17L:L:F130 8.536520
18L:L:Q133 7.445420
19L:L:F134 9.198520
20R:R:Y15 11.32418
21R:R:Y22 4.332545
22R:R:V32 5.6525403
23R:R:Y45 4.912508
24R:R:V59 2.49408
25R:R:F62 6.055407
26R:R:W75 6.065607
27R:R:D83 5.864139
28R:R:F86 6.35127
29R:R:F101 7.03167604
30R:R:W103 6.9409
31R:R:F105 5.46407
32R:R:Q118 6.1675405
33R:R:N120 5.0525408
34R:R:F122 4.421676156
35R:R:Y136 3.658507
36R:R:I140 4.54407
37R:R:H141 3.7825406
38R:R:W162 55149
39R:R:F175 6.295404
40R:R:Y188 7.6575423
41R:R:F191 6.966505
42R:R:F211 4.85254166
43R:R:P218 4.5775409
44R:R:I230 2.98404
45R:R:W259 7.328508
46R:R:C298 2.2275407
47R:R:F311 5.275408
48R:R:R314 7.775406
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:V12 L:L:V90 10.86544.81NoNo000
2L:L:G9 L:L:V12 15.66811.84NoNo000
3L:L:G9 L:L:V46 16.84411.84NoNo000
4L:L:L48 L:L:V46 18.01597.45YesNo000
5L:L:F50 L:L:L48 29.4847.31YesYes000
6L:L:E29 L:L:F50 45.078616.32NoYes000
7L:L:E29 L:L:L52 42.900913.25NoNo100
8L:L:I82 L:L:R93 75.54135.01NoYes000
9L:L:A80 L:L:I82 74.60893.25NoNo000
10L:L:A80 L:L:F50 73.67442.77NoYes000
11R:R:S23 R:R:Y21 12.05193.82NoNo053
12L:L:R93 R:R:S23 13.17545.27YesNo005
13L:L:F27 L:L:Q54 30.98978.2YesYes100
14L:L:F27 L:L:L52 41.95176.09YesNo100
15L:L:G73 L:L:Q54 25.09084.93NoYes000
16L:L:G73 L:L:K75 23.93791.74NoNo000
17L:L:K75 L:L:Q53 15.58629.49NoYes500
18L:L:Q53 L:L:V69 13.37282.87YesNo000
19L:L:Q28 L:L:V69 12.17795.73NoNo000
20L:L:Q28 L:L:T55 10.97889.92NoYes000
21L:L:R93 R:R:E25 94.9616.28YesNo007
22R:R:E25 R:R:N182 96.65685.26NoNo073
23R:R:K31 R:R:N182 97.49895.6NoNo013
24R:R:H184 R:R:K31 99.17057.86NoNo031
25R:R:H184 R:R:V32 1002.77NoYes033
26R:R:F101 R:R:V32 83.66415.24YesYes043
27L:L:F134 R:R:F101 56.481717.15YesYes004
28L:L:F134 L:L:Q133 34.48212.88YesYes200
29L:L:F130 L:L:Q133 34.42328.2YesYes200
30L:L:F130 L:L:R117 29.704510.69YesNo000
31L:L:Q114 L:L:R117 20.53593.5NoNo000
32L:L:Q114 R:R:Y22 19.42713.38NoYes005
33L:L:H96 R:R:Y22 17.32294.36YesYes405
34R:R:Q283 R:R:V32 24.27395.73NoYes033
35L:L:F134 R:R:Q283 24.32437.03YesNo003
36L:L:F134 L:L:Y129 43.03325.16YesYes200
37L:L:Y129 R:R:I272 23.77624.84YesNo002
38L:L:H126 R:R:I272 17.438410.61YesNo002
39L:L:D124 L:L:H126 30.12877.56NoYes1100
40L:L:D124 L:L:S127 28.11692.94NoNo000
41L:L:A121 L:L:S127 26.90523.42NoNo000
42L:L:A121 L:L:K83 24.59943.21NoNo000
43L:L:F45 L:L:K83 25.97913.72YesNo000
44L:L:F45 L:L:Q119 18.767714.05YesNo000
45L:L:F40 L:L:Q119 11.55212.34YesNo000
46L:L:Y129 R:R:H279 18.179714.16YesNo001
47L:L:H126 R:R:H279 17.12343.58YesNo001
48L:L:F130 R:R:Y188 15.025510.32YesYes203
49R:R:F101 R:R:Y96 92.08096.19YesNo046
50R:R:W103 R:R:Y96 86.18627.72YesNo096
51R:R:C110 R:R:W103 81.599810.45NoYes099
52R:R:C110 R:R:C187 90.51645.46NoNo099
53R:R:C187 R:R:R176 90.16365.57NoNo094
54R:R:N189 R:R:R176 89.466414.46NoNo044
55R:R:F191 R:R:N189 89.13673.62YesNo054
56L:L:F136 R:R:T290 78.52549.08NoNo006
57R:R:T290 R:R:Y93 79.1479.99NoNo066
58R:R:Y93 R:R:Y96 80.79342.98NoNo066
59L:L:F136 R:R:F86 77.08063.22NoYes1207
60R:R:F191 R:R:H203 85.17413.58YesNo054
61R:R:H203 R:R:H273 84.65534.78NoNo043
62R:R:H273 R:R:L200 83.60537.71NoNo032
63R:R:H204 R:R:L200 83.0746.43NoNo042
64R:R:H204 R:R:W208 80.90685.29NoNo044
65R:R:F211 R:R:W208 79.7984.01YesNo064
66R:R:F211 R:R:L216 75.78493.65YesNo064
67R:R:I212 R:R:L216 75.19484.28NoNo054
68R:R:I212 R:R:I213 74.60052.94NoNo054
69R:R:F122 R:R:I213 72.41023.77YesNo1564
70R:R:F122 R:R:M121 61.05763.73YesNo067
71R:R:M121 R:R:W259 60.39196.98NoYes078
72R:R:N296 R:R:W259 48.150913.56NoYes098
73R:R:N296 R:R:N300 45.85145.45NoNo099
74R:R:D83 R:R:N300 38.23478.08YesNo099
75R:R:D83 R:R:N56 36.04234.04YesNo099
76R:R:F84 R:R:N56 18.19234.83NoNo079
77R:R:F84 R:R:I53 15.42032.51NoNo076
78R:R:I53 R:R:P54 12.61055.08NoNo064
79R:R:G52 R:R:P54 10.71632.03NoNo084
80R:R:N56 R:R:P301 18.86436.52NoNo099
81R:R:P301 R:R:V59 17.96761.77NoYes098
82R:R:V305 R:R:V59 14.39343.21NoYes068
83R:R:F86 R:R:N120 78.21886.04YesYes078
84R:R:F311 R:R:V305 13.46313.93YesNo086
85R:R:L119 R:R:N120 74.06082.75NoYes058
86R:R:L119 R:R:W162 73.35313.42NoYes059
87R:R:N78 R:R:W162 66.01786.78NoYes1499
88R:R:I158 R:R:N78 66.045111.33NoNo079
89R:R:I158 R:R:W75 63.00434.7NoYes077
90R:R:V71 R:R:W75 30.41644.9NoYes067
91R:R:R149 R:R:V71 28.70285.23NoNo076
92R:R:D134 R:R:W75 29.48412.28NoYes087
93R:R:D134 R:R:R149 28.635610.72NoNo087
94R:R:C110 R:R:T178 14.90583.38NoNo095
95R:R:I107 R:R:T178 14.24853.04NoNo045
96R:R:D177 R:R:Y188 11.10274.6NoYes253
97R:R:F175 R:R:F191 18.51159.65YesYes045
98R:R:F255 R:R:W259 15.31118.02NoYes098
99R:R:F255 R:R:M222 12.52022.49NoNo098
100R:R:H138 R:R:R149 55.545122.57NoNo087
101R:R:H138 R:R:L139 51.95833.86NoNo088
102R:R:H135 R:R:L139 50.158510.29NoNo098
103R:R:H135 R:R:L229 39.11042.57NoNo097
104R:R:I140 R:R:L229 37.28972.85YesNo077
105R:R:H141 R:R:I140 18.78247.95YesYes067
106R:R:I140 R:R:K232 11.27285.82YesNo075
107R:R:F175 R:R:R202 12.01837.48YesNo041
108R:R:L198 R:R:R202 11.249710.93NoNo041
109R:R:D195 R:R:L198 10.55466.79NoNo024
110R:R:D177 R:R:I107 13.08932.8NoNo054
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:F17 R:R:Y21 10.32 0 No No 0 3 0 1
L:L:P22 R:R:D18 8.05 9 No No 0 6 0 1
L:L:V23 R:R:D18 5.84 9 No No 0 6 0 1
L:L:Q24 R:R:Y15 5.64 0 No Yes 0 8 0 1
L:L:W25 R:R:Y15 9.65 1 No Yes 0 8 0 1
L:L:Q54 R:R:Y15 7.89 1 Yes Yes 0 8 0 1
L:L:R74 R:R:Y17 6.17 1 No No 0 4 0 1
L:L:L91 R:R:L28 4.15 0 No No 0 2 0 1
L:L:G92 R:R:S26 3.71 0 No No 0 4 0 1
L:L:R93 R:R:S23 5.27 0 Yes No 0 5 0 1
L:L:R93 R:R:E25 16.28 0 Yes No 0 7 0 1
L:L:L94 R:R:Y22 3.52 4 No Yes 0 5 0 1
L:L:L94 R:R:L24 4.15 4 No No 0 4 0 1
L:L:V95 R:R:Y21 6.31 0 No No 0 3 0 1
L:L:H96 R:R:Y22 4.36 4 Yes Yes 0 5 0 1
L:L:I99 R:R:Y17 8.46 0 No No 0 4 0 1
L:L:E109 R:R:H194 8.62 0 No No 0 3 0 1
L:L:T113 R:R:Q192 5.67 0 No No 0 4 0 1
L:L:Q114 R:R:Y22 3.38 0 No Yes 0 5 0 1
L:L:H126 R:R:I272 10.61 11 Yes No 0 2 0 1
L:L:H126 R:R:H279 3.58 11 Yes No 0 1 0 1
L:L:F128 R:R:L24 6.09 0 Yes No 0 4 0 1
L:L:F128 R:R:S26 6.61 0 Yes No 0 4 0 1
L:L:F128 R:R:E29 4.66 0 Yes No 0 6 0 1
L:L:F128 R:R:F181 9.65 0 Yes No 0 4 0 1
L:L:Y129 R:R:E269 13.47 2 Yes No 0 4 0 1
L:L:Y129 R:R:I272 4.84 2 Yes No 0 2 0 1
L:L:Y129 R:R:H279 14.16 2 Yes No 0 1 0 1
L:L:F130 R:R:V179 9.18 2 Yes No 0 1 0 1
L:L:F130 R:R:F181 4.29 2 Yes No 0 4 0 1
L:L:F130 R:R:Y188 10.32 2 Yes Yes 0 3 0 1
L:L:P131 R:R:F191 4.33 0 No Yes 0 5 0 1
L:L:Q133 R:R:L186 5.32 2 Yes No 0 3 0 1
L:L:F134 R:R:F101 17.15 2 Yes Yes 0 4 0 1
L:L:F134 R:R:Q283 7.03 2 Yes No 0 3 0 1
L:L:F134 R:R:I286 3.77 2 Yes No 0 4 0 1
L:L:F136 R:R:F86 3.22 12 No Yes 0 7 0 1
L:L:F136 R:R:A117 2.77 12 No No 0 6 0 1
L:L:F136 R:R:T290 9.08 12 No No 0 6 0 1
L:L:S137 R:R:Q118 11.55 0 No Yes 0 5 0 1
R:R:N14 R:R:Y15 22.1 0 No Yes 7 8 2 1
R:R:S23 R:R:Y21 3.82 0 No No 5 3 1 1
R:R:L24 R:R:Y22 7.03 4 No Yes 4 5 1 1
R:R:E180 R:R:Y22 3.37 0 No Yes 1 5 2 1
R:R:E25 R:R:N182 5.26 0 No No 7 3 1 2
R:R:F101 R:R:V32 5.24 0 Yes Yes 4 3 1 2
R:R:Q283 R:R:V32 5.73 0 No Yes 3 3 1 2
R:R:F101 R:R:H38 6.79 0 Yes No 4 5 1 2
R:R:A117 R:R:F86 2.77 12 No Yes 6 7 1 1
R:R:F86 R:R:N120 6.04 12 Yes Yes 7 8 1 2
R:R:F294 R:R:F86 12.86 0 No Yes 7 7 2 1
R:R:F86 R:R:S297 6.61 12 Yes No 7 8 1 2
R:R:Y93 R:R:Y96 2.98 0 No No 6 6 2 2
R:R:T290 R:R:Y93 9.99 0 No No 6 6 1 2
R:R:F101 R:R:Y96 6.19 0 Yes No 4 6 1 2
R:R:F101 R:R:V97 3.93 0 Yes No 4 5 1 2
R:R:F101 R:R:P287 2.89 0 Yes No 4 4 1 2
R:R:F122 R:R:Q118 3.51 15 Yes Yes 6 5 2 1
R:R:G169 R:R:Q118 6.58 0 No Yes 7 5 2 1
R:R:A172 R:R:Q118 3.03 0 No Yes 4 5 2 1
R:R:F175 R:R:F191 9.65 0 Yes Yes 4 5 2 1
R:R:D177 R:R:Y188 4.6 2 No Yes 5 3 2 1
R:R:D177 R:R:N190 5.39 2 No No 5 3 2 2
R:R:V179 R:R:Y188 7.57 2 No Yes 1 3 1 1
R:R:N190 R:R:Y188 8.14 2 No Yes 3 3 2 1
R:R:F191 R:R:N189 3.62 0 Yes No 5 4 1 2
R:R:K193 R:R:N190 9.79 0 No No 2 3 2 2
R:R:F191 R:R:H203 13.58 0 Yes No 5 4 1 2
R:R:F191 R:R:L206 3.65 0 Yes No 5 5 1 2
R:R:H194 R:R:K193 3.93 0 No No 3 2 1 2
R:R:E269 R:R:M282 9.47 0 No No 4 4 1 2
R:R:I286 R:R:P287 3.39 0 No No 4 4 1 2
L:L:V23 R:R:Y17 2.52 9 No No 0 4 0 1
L:L:A135 R:R:I286 1.62 0 No No 0 4 0 1
L:L:P98 R:R:D20 1.61 0 No No 0 2 0 1
R:R:P196 R:R:Q192 1.58 0 No No 1 4 2 1
R:R:I272 R:R:S276 1.55 0 No No 2 3 1 2
R:R:D20 R:R:L19 1.36 0 No No 2 3 1 2
L:L:L116 R:R:Q192 1.33 0 No No 0 4 0 1
R:R:D27 R:R:E25 1.3 0 No No 4 7 2 1
R:R:H280 R:R:Q283 1.24 0 No No 3 3 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XGM_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.77
Number of Linked Nodes 418
Number of Links 461
Number of Hubs 48
Number of Links mediated by Hubs 192
Number of Communities 16
Number of Nodes involved in Communities 66
Number of Links involved in Communities 74
Path Summary
Number Of Nodes in MetaPath 111
Number Of Links MetaPath 110
Number of Shortest Paths 124286
Length Of Smallest Path 3
Average Path Length 23.1645
Length of Longest Path 55
Minimum Path Strength 1.24
Average Path Strength 6.48652
Maximum Path Strength 16.645
Minimum Path Correlation 0.7
Average Path Correlation 0.962905
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 2.22222
Average % Of Corr. Nodes 56.3893
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 31.3189
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP46091
Sequence
>8XGM_nogp_Chain_R
NYSYDLDYY SLESDLEEK VQLGVVHWV SLVLYCLAF VLGIPGNAI 
VIWFTGFKW KKTVTTLWF LNLAIADFI FLLFLPLYI SYVAMNFHW 
PFGIWLCKA NSFTAQLNM FASVFFLTV ISLDHYIHL IHPVLSHRH 
RTLKNSLIV IIFIWLLAS LIGGPALYF RDTVEFNNH TLCYNNFQK 
HDPDLTLIR HHVLTWVKF IIGYLFPLL TMSICYLCL IFKVKKRSI 
LISSRHFWT ILVVVVAFV VCWTPYHLF SIWELTIHH NSYSHHVMQ 
AGIPLSTGL AFLNSCLNP ILYVLISKK FQARFRSSV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9L3YAProteinChemerinCML2Homo sapiensRetinoic acid receptor responder protein 2-Gi1/β1/γ23.62025-03-12doi.org/10.1093/procel/pwae073
9L3Y (No Gprot) AProteinChemerinCML2Homo sapiensRetinoic acid receptor responder protein 2-3.62025-03-12doi.org/10.1093/procel/pwae073
8XGMAProteinChemerinCML2Homo sapiensChemerin-Gi1/β1/γ23.292024-08-21To be published
8XGM (No Gprot) AProteinChemerinCML2Homo sapiensChemerin-3.292024-08-21To be published
8JJPAProteinChemerinCML2Homo sapiensChemerin-Gi1/β1/γ22.92024-08-21To be published
8JJP (No Gprot) AProteinChemerinCML2Homo sapiensChemerin-2.92024-08-21To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XGM_nogp.zip



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