Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:M9 8.645411
2R:R:D10 10.1875416
3R:R:S11 6.16417
4R:R:F13 6.186516
5R:R:R14 8.67143714
6R:R:Y15 8.898515
7R:R:F18 8.062505
8R:R:Y22 6.975408
9R:R:Y44 7.77545
10R:R:E51 9.776526
11R:R:F55 7.548527
12R:R:N58 7.0925429
13R:R:F66 7.432507
14R:R:W73 6.64167617
15R:R:Y76 7.27857716
16R:R:Y77 7.02667616
17R:R:W83 7.67518
18R:R:L85 4.69417
19R:R:L89 4.6525415
20R:R:F97 6.655417
21R:R:Y102 7.57167618
22R:R:F107 7.052528
23R:R:F116 7.635408
24R:R:R172 6.37614
25R:R:C173 6.745419
26R:R:F174 6.904514
27R:R:H176 8.236514
28R:R:Y177 6.98416
29R:R:V184 3.65413
30R:R:L185 5.6875414
31R:R:F199 4.5275466
32R:R:I202 5.052507
33R:R:C205 3.92407
34R:R:N206 6.365409
35R:R:L213 2.85408
36R:R:L231 4.942505
37R:R:F241 7.375409
38R:R:V246 3.4175466
39R:R:H248 10.2333617
40R:R:H249 12.885418
41R:R:Q252 8.57417
42R:R:W255 10.998515
43R:R:E259 9.9075412
44R:R:L260 4.465411
45R:R:F262 5.955411
46R:R:H275 8.455615
47R:R:Q276 5.56167614
48R:R:T278 4.67417
49R:R:Y293 6.3375459
50R:R:F295 4.444507
51R:R:K299 5.43406
52R:R:H303 7.516534
53L:L:?1 8.420591710
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:R172 R:R:Y76 20.93934.12YesYes146
2R:R:F18 R:R:Y22 15.22837.22YesYes058
3R:R:I25 R:R:S283 10.55473.1NoNo077
4R:R:C286 R:R:F66 66.33946.98NoYes087
5R:R:F66 R:R:F97 72.59712.86YesYes077
6R:R:F97 R:R:W73 14.80284.01YesYes177
7R:R:W73 R:R:Y76 24.57214.82YesYes176
8L:L:?1 R:R:F97 37.40145.46YesYes107
9L:L:?1 R:R:Y77 22.1243.94YesYes106
10R:R:C286 R:R:D63 59.68256.22NoNo089
11R:R:D63 R:R:N33 57.41124.04NoNo099
12R:R:N33 R:R:T60 52.79015.85NoNo099
13R:R:T60 R:R:V36 49.25547.93NoNo098
14R:R:C294 R:R:V36 37.0615.12NoNo078
15R:R:C294 R:R:M56 33.97813.24NoNo078
16R:R:F40 R:R:M56 32.67226.22NoNo078
17R:R:F40 R:R:Y44 31.38287.22NoYes075
18R:R:L43 R:R:Y44 19.473115.24NoYes055
19R:R:K299 R:R:L43 18.09857.05YesNo065
20R:R:H303 R:R:K299 11.27811.79YesYes046
21R:R:F295 R:R:V36 12.15843.93YesNo078
22R:R:F55 R:R:I111 24.32665.02YesNo078
23R:R:I111 R:R:R115 25.61613.76NoNo089
24R:R:R115 R:R:Y293 26.82057.2NoYes099
25R:R:L108 R:R:Y293 34.38068.21NoYes099
26R:R:D289 R:R:L108 38.07234.07NoNo099
27R:R:D289 R:R:N285 39.289813.46NoNo099
28R:R:F245 R:R:N285 45.27914.5NoNo089
29R:R:F241 R:R:F245 47.628916.08YesNo098
30R:R:F195 R:R:F241 98.3445.36NoYes099
31R:R:F195 R:R:H249 10030.55NoYes098
32R:R:H249 R:R:Y102 83.94046.53YesYes188
33L:L:?1 R:R:Y102 64.05175.91YesYes108
34R:R:H248 R:R:H249 16.085710.75YesYes178
35R:R:H248 R:R:H275 10.24715.97YesYes175
36R:R:F107 R:R:F55 12.42684.29YesYes287
37R:R:W83 R:R:Y76 23.06998.68YesYes186
38R:R:L89 R:R:W83 16.51454.56YesYes158
39R:R:L85 R:R:W83 14.15486.83YesYes178
40R:R:R172 R:R:V170 13.27775.23YesNo043
41R:R:F241 R:R:I202 52.46283.77YesYes097
42R:R:I202 R:R:N206 47.8944.25YesYes079
43R:R:C205 R:R:N206 45.22661.57YesYes079
44R:R:C205 R:R:F116 37.98079.78YesYes078
45R:R:F116 R:R:I209 25.38052.51YesNo088
46L:L:?1 R:R:V184 16.38683.34YesYes103
47R:R:L260 R:R:V184 14.79632.98YesYes113
48R:R:F199 R:R:F241 10.42714.29YesYes069
49R:R:I209 R:R:L213 21.45972.85NoYes088
50L:L:?1 R:R:W255 11.444912.77YesYes105
51R:R:F66 R:R:S283 12.18793.96YesNo077
52L:L:?1 R:R:W73 25.835414.04YesYes107
53R:R:Y76 R:R:Y77 19.73827.94YesYes166
54R:R:C173 R:R:W73 14.9736.53YesYes197
55R:R:C173 R:R:W83 10.67269.14YesYes198
56R:R:F97 R:R:F98 21.52184.29YesNo175
57R:R:F98 R:R:Y102 21.42045.16NoYes158
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:R14 R:R:Y77 5.14 1 Yes Yes 4 6 2 1
R:R:Q276 R:R:R14 5.84 1 Yes Yes 4 4 2 2
R:R:F18 R:R:Y77 17.54 0 Yes Yes 5 6 2 1
R:R:F18 R:R:Q276 7.03 0 Yes Yes 5 4 2 2
R:R:F66 R:R:F97 12.86 0 Yes Yes 7 7 2 1
R:R:W73 R:R:Y76 4.82 1 Yes Yes 7 6 1 2
R:R:W73 R:R:Y77 4.82 1 Yes Yes 7 6 1 1
R:R:G94 R:R:W73 5.63 0 No Yes 5 7 2 1
R:R:F97 R:R:W73 4.01 1 Yes Yes 7 7 1 1
R:R:C173 R:R:W73 6.53 1 Yes Yes 9 7 2 1
L:L:?1 R:R:W73 14.04 1 Yes Yes 0 7 0 1
R:R:Y76 R:R:Y77 7.94 1 Yes Yes 6 6 2 1
R:R:C173 R:R:Y76 4.03 1 Yes Yes 9 6 2 2
L:L:?1 R:R:Y77 3.94 1 Yes Yes 0 6 0 1
R:R:F174 R:R:G94 9.03 1 Yes No 4 5 1 2
R:R:F97 R:R:F98 4.29 1 Yes No 7 5 1 1
L:L:?1 R:R:F97 5.46 1 Yes Yes 0 7 0 1
R:R:F98 R:R:Y102 5.16 1 No Yes 5 8 1 1
L:L:?1 R:R:F98 21.84 1 Yes No 0 5 0 1
R:R:T101 R:R:Y102 8.74 0 No Yes 8 8 2 1
R:R:I191 R:R:Y102 15.71 1 No Yes 6 8 1 1
R:R:H249 R:R:Y102 6.53 1 Yes Yes 8 8 2 1
R:R:Q252 R:R:Y102 3.38 1 Yes Yes 7 8 2 1
L:L:?1 R:R:Y102 5.91 1 Yes Yes 0 8 0 1
R:R:F152 R:R:Y151 6.19 1 No No 5 7 1 2
R:R:F152 R:R:I187 12.56 1 No No 5 5 1 1
L:L:?1 R:R:F152 4.78 1 Yes No 0 5 0 1
R:R:F174 R:R:S157 6.61 1 Yes No 4 5 1 2
R:R:S157 R:R:Y177 3.82 1 No Yes 5 6 2 1
R:R:F174 R:R:Y177 7.22 1 Yes Yes 4 6 1 1
L:L:?1 R:R:F174 8.87 1 Yes Yes 0 4 0 1
R:R:V184 R:R:Y177 5.05 1 Yes Yes 3 6 1 1
L:L:?1 R:R:Y177 11.83 1 Yes Yes 0 6 0 1
L:L:?1 R:R:V184 3.34 1 Yes Yes 0 3 0 1
L:L:?1 R:R:I187 10.4 1 Yes No 0 5 0 1
R:R:H188 R:R:Q252 8.65 0 No Yes 4 7 1 2
R:R:H188 R:R:T256 15.06 0 No No 4 5 1 2
L:L:?1 R:R:H188 15.85 1 Yes No 0 4 0 1
R:R:F190 R:R:I191 3.77 1 No No 5 6 1 1
R:R:F190 R:R:S194 7.93 1 No No 5 6 1 1
L:L:?1 R:R:F190 7.51 1 Yes No 0 5 0 1
L:L:?1 R:R:I191 7.2 1 Yes No 0 6 0 1
L:L:?1 R:R:S194 4.21 1 Yes No 0 6 0 1
R:R:H248 R:R:H249 10.75 1 Yes Yes 7 8 2 2
R:R:H248 R:R:Q252 18.54 1 Yes Yes 7 7 2 2
R:R:H248 R:R:H275 5.97 1 Yes Yes 7 5 2 1
R:R:H248 R:R:T278 6.85 1 Yes Yes 7 7 2 2
R:R:H249 R:R:Q252 3.71 1 Yes Yes 8 7 2 2
R:R:H275 R:R:V251 6.92 1 Yes No 5 5 1 2
R:R:T278 R:R:V251 4.76 1 Yes No 7 5 2 2
R:R:T256 R:R:W255 3.64 0 No Yes 5 5 2 1
R:R:E259 R:R:W255 13.08 1 Yes Yes 2 5 2 1
R:R:H275 R:R:W255 24.33 1 Yes Yes 5 5 1 1
L:L:?1 R:R:W255 12.77 1 Yes Yes 0 5 0 1
R:R:H275 R:R:Q276 3.71 1 Yes Yes 5 4 1 2
R:R:H275 R:R:T278 5.48 1 Yes Yes 5 7 1 2
L:L:?1 R:R:H275 4.32 1 Yes Yes 0 5 0 1
R:R:S181 R:R:V184 3.23 0 No Yes 4 3 2 1
R:R:L260 R:R:V184 2.98 1 Yes Yes 1 3 2 1
R:R:C95 R:R:F174 2.79 0 No Yes 6 4 2 1
R:R:P19 R:R:Y77 2.78 0 No Yes 5 6 2 1
R:R:I271 R:R:W255 1.17 0 No Yes 4 5 2 1
L:L:?1 R:R:A148 0.88 1 Yes No 0 6 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XYD_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.24
Number of Linked Nodes 286
Number of Links 342
Number of Hubs 53
Number of Links mediated by Hubs 193
Number of Communities 6
Number of Nodes involved in Communities 68
Number of Links involved in Communities 107
Path Summary
Number Of Nodes in MetaPath 58
Number Of Links MetaPath 57
Number of Shortest Paths 63881
Length Of Smallest Path 3
Average Path Length 13.4273
Length of Longest Path 35
Minimum Path Strength 1.44
Average Path Strength 7.24942
Maximum Path Strength 20.65
Minimum Path Correlation 0.7
Average Path Correlation 0.937365
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 57.7735
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 51.8177
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • binding   • lipid binding   • lipopolysaccharide binding   • carbohydrate derivative binding   • platelet activating factor receptor activity   • phospholipid binding   • pattern recognition receptor activity   • lipopolysaccharide immune receptor activity   • protein binding   • kinase binding   • enzyme binding   • protein kinase binding   • mitogen-activated protein kinase binding   • G protein-coupled purinergic nucleotide receptor activity   • purinergic nucleotide receptor activity   • nucleotide receptor activity   • positive regulation of locomotion   • regulation of cell motility   • regulation of cellular process   • positive regulation of biological process   • positive regulation of cell migration   • positive regulation of cell motility   • regulation of cell migration   • cellular extravasation   • cell migration   • regulation of immune system process   • cell motility   • positive regulation of immune system process   • locomotion   • positive regulation of cellular process
Gene OntologyBiological Process• positive regulation of locomotion   • regulation of cell motility   • regulation of cellular process   • positive regulation of biological process   • positive regulation of cell migration   • positive regulation of cell motility   • regulation of cell migration   • cellular extravasation   • cell migration   • regulation of immune system process   • cell motility   • positive regulation of immune system process   • locomotion   • positive regulation of cellular process   • regulation of biological process   • regulation of leukocyte migration   • biological regulation   • positive regulation of leukocyte migration   • leukocyte migration   • immune system process   • regulation of locomotion   • cellular process   • positive regulation of cellular extravasation   • regulation of cellular extravasation   • response to stimulus   • immune response   • interleukin-6 production   • multicellular organismal process   • positive regulation of macromolecule biosynthetic process   • positive regulation of interleukin-6 production   • regulation of interleukin-6 production   • positive regulation of metabolic process   • positive regulation of biosynthetic process   • regulation of cytokine production   • cytokine production   • regulation of multicellular organismal process   • positive regulation of macromolecule metabolic process   • regulation of biosynthetic process   • regulation of macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • regulation of gene expression   • biosynthetic process   • positive regulation of gene expression   • positive regulation of multicellular organismal process   • regulation of macromolecule biosynthetic process   • metabolic process   • macromolecule metabolic process   • positive regulation of cytokine production   • regulation of metabolic process   • multi-multicellular organism process   • reproductive process   • parturition   • multi-organism reproductive process   • cellular response to nitrogen compound   • cellular response to stimulus   • response to organophosphorus   • response to oxygen-containing compound   • response to nitrogen compound   • response to purine-containing compound   • response to cAMP   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • response to chemical   • cellular response to cAMP   • chemotaxis   • taxis   • response to external stimulus   • positive regulation of protein metabolic process   • positive regulation of translation   • regulation of primary metabolic process   • post-transcriptional regulation of gene expression   • protein metabolic process   • regulation of protein metabolic process   • primary metabolic process   • translation   • regulation of translation   • regulation of reproductive process   • multicellular organismal reproductive process   • positive regulation of maternal process involved in parturition   • maternal process involved in parturition   • regulation of maternal process involved in parturition   • positive regulation of reproductive process   • response to ketone   • response to lipid   • response to endogenous stimulus   • response to glucocorticoid   • response to corticosteroid   • response to hormone   • response to steroid hormone   • response to dexamethasone   • positive regulation of leukocyte cell-cell adhesion   • regulation of leukocyte adhesion to vascular endothelial cell   • leukocyte cell-cell adhesion   • leukocyte tethering or rolling   • positive regulation of cell-cell adhesion   • cell adhesion   • cell-cell adhesion   • positive regulation of leukocyte tethering or rolling   • regulation of cell-cell adhesion   • positive regulation of cell adhesion   • regulation of cell adhesion   • positive regulation of leukocyte adhesion to vascular endothelial cell   • regulation of leukocyte tethering or rolling   • leukocyte adhesion to vascular endothelial cell   • regulation of leukocyte cell-cell adhesion   • regulation of localization   • regulation of transcytosis   • transport   • regulation of transport   • positive regulation of transcytosis   • regulation of vesicle-mediated transport   • establishment of localization   • vesicle-mediated transport   • localization   • positive regulation of transport   • transcytosis   • response to symbiont   • biological process involved in interspecies interaction between organisms   • response to other organism   • response to bacterium   • response to symbiotic bacterium   • response to external biotic stimulus   • response to biotic stimulus   • signaling   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cell communication   • G protein-coupled receptor signaling pathway   • signal transduction   • cellular response to 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine   • response to 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine   • cellular response to ether   • response to ether   • cellular response to lipid   • cell population proliferation   • regulation of smooth muscle cell proliferation   • positive regulation of cell population proliferation   • smooth muscle cell proliferation   • positive regulation of smooth muscle cell proliferation   • regulation of cell population proliferation   • muscle cell proliferation   • defense response   • response to stress   • inflammatory response   • RNA metabolic process   • nucleobase-containing compound metabolic process   • RNA biosynthetic process   • nucleic acid biosynthetic process   • DNA-templated transcription   • regulation of RNA metabolic process   • transcription by RNA polymerase II   • regulation of nucleobase-containing compound metabolic process   • regulation of RNA biosynthetic process   • regulation of transcription by RNA polymerase II   • nucleobase-containing compound biosynthetic process   • nucleic acid metabolic process   • regulation of DNA-templated transcription   • response to fatty acid   • cellular response to fatty acid   • regulation of tumor necrosis factor production   • positive regulation of tumor necrosis factor superfamily cytokine production   • tumor necrosis factor superfamily cytokine production   • positive regulation of tumor necrosis factor production   • tumor necrosis factor production   • regulation of tumor necrosis factor superfamily cytokine production   • polyol metabolic process   • small molecule biosynthetic process   • inositol trisphosphate biosynthetic process   • alcohol metabolic process   • inositol phosphate metabolic process   • organophosphate metabolic process   • organophosphate biosynthetic process   • inositol phosphate biosynthetic process   • phosphate-containing compound metabolic process   • polyol biosynthetic process   • alcohol biosynthetic process   • inositol trisphosphate metabolic process   • small molecule metabolic process   • phosphorus metabolic process   • regulation of immune effector process   • neutrophil activation   • regulation of myeloid leukocyte mediated immunity   • positive regulation of leukocyte mediated immunity   • regulated exocytosis   • cell activation involved in immune response   • leukocyte degranulation   • myeloid leukocyte mediated immunity   • myeloid leukocyte activation   • neutrophil activation involved in immune response   • positive regulation of leukocyte degranulation   • positive regulation of regulated secretory pathway   • positive regulation of immune response   • establishment of localization in cell   • leukocyte mediated immunity   • immune effector process   • regulation of secretion   • regulation of leukocyte mediated immunity   • exocytosis   • regulation of response to stimulus   • positive regulation of myeloid leukocyte mediated immunity   • regulation of immune response   • cellular localization   • positive regulation of secretion by cell   • positive regulation of exocytosis   • leukocyte activation   • regulation of regulated secretory pathway   • positive regulation of response to stimulus   • neutrophil mediated immunity   • secretion by cell   • regulation of secretion by cell   • positive regulation of secretion   • regulation of neutrophil degranulation   • leukocyte activation involved in immune response   • neutrophil degranulation   • positive regulation of immune effector process   • regulation of leukocyte degranulation   • secretion   • cell activation   • export from cell   • myeloid cell activation involved in immune response   • regulation of exocytosis   • positive regulation of neutrophil degranulation   • granulocyte activation   • regulation of inositol phosphate biosynthetic process   • positive regulation of phosphate metabolic process   • regulation of small molecule metabolic process   • regulation of phosphate metabolic process   • regulation of carbohydrate metabolic process   • carbohydrate metabolic process   • positive regulation of phosphorus metabolic process   • regulation of alcohol biosynthetic process   • carbohydrate biosynthetic process   • positive regulation of inositol phosphate biosynthetic process   • regulation of phosphorus metabolic process   • positive regulation of carbohydrate metabolic process   • regulation of carbohydrate biosynthetic process   • positive regulation of small molecule metabolic process   • positive regulation of alcohol biosynthetic process   • system process   • circulatory system process   • regulation of blood pressure   • regulation of biological quality   • negative regulation of blood pressure   • blood circulation   • gastro-intestinal system smooth muscle contraction   • positive regulation of smooth muscle contraction   • regulation of system process   • muscle contraction   • muscle system process   • regulation of muscle system process   • positive regulation of gastro-intestinal system smooth muscle contraction   • regulation of gastro-intestinal system smooth muscle contraction   • smooth muscle contraction   • regulation of smooth muscle contraction   • regulation of muscle contraction   • positive regulation of muscle contraction   • response to abiotic stimulus   • cellular response to gravity   • response to gravity   • cellular response to abiotic stimulus   • cellular response to environmental stimulus   • membrane-bounded organelle   • intracellular anatomical structure   • tertiary granule membrane   • membrane   • intracellular vesicle   • intracellular membrane-bounded organelle   • endomembrane system   • tertiary granule   • intracellular organelle   • cytoplasmic vesicle membrane   • cellular anatomical structure   • bounding membrane of organelle   • vesicle membrane   • cytoplasmic vesicle
Gene OntologyCellular Component• membrane-bounded organelle   • intracellular anatomical structure   • tertiary granule membrane   • membrane   • intracellular vesicle   • intracellular membrane-bounded organelle   • endomembrane system   • tertiary granule   • intracellular organelle   • cytoplasmic vesicle membrane   • cellular anatomical structure   • bounding membrane of organelle   • vesicle membrane   • cytoplasmic vesicle   • organelle   • secretory granule   • secretory vesicle   • cytoplasm   • vesicle   • organelle membrane   • secretory granule membrane   • cell periphery   • plasma membrane   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • lysosomal membrane   • lysosome   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation   • D2 dopamine receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • G-protein beta/gamma-subunit complex binding   • G protein activity   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • response to peptide hormone   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • cellular response to forskolin   • response to forskolin   • midbody   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • nucleolus   • intracellular organelle lumen   • organelle lumen   • membraneless organelle   • nuclear lumen   • cell cortex   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • nucleoplasm   • Golgi apparatus   • ciliary basal body
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePFS
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePFS
NamePlatelet Activating Factor
Synonyms1-hexadecyl-2-acetyl-glycero-3-phosphocholine
Identifier
FormulaC26 H54 N O7 P
Molecular Weight523.683
SMILES
PubChem108156
Formal Charge0
Total Atoms89
Total Chiral Atoms1
Total Bonds88
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP25105
Sequence
>8XYD_nogp_Chain_R
SHMDSEFRY TLFPIVYSI IFVLGVIAN GYVLWVFAR LYPCKKFNE 
IKIFMVNLT MADMLFLIT LPLWIVYYQ NQGNWILPK FLCNVAGCL 
FFINTYCSV AFLGVITYN RFQAVTRPI KTAQANTRK RGISLSLVI 
WVAIVGAAS YFLILDSTN TVPDSAGSG NVTRCFEHY EKGSVPVLI 
IHIFIVFSF FLVFLIILF CNLVIIRTL LMQPVQQQR NAEVKRRAL 
WMVCTVLAV FIICFVPHH VVQLPWTLA ELGFQDSKF HQAINDAHQ 
VTLCLLSTN CVLDPVIYC FLTKKFRKH LTEKFY


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8XYDALipidPlatelet Activating FactorPAFHomo sapiensPlatelet Activating Factor-Gi1/β1/γ22.92024-11-1310.1016/j.celrep.2024.114422
8XYD (No Gprot) ALipidPlatelet Activating FactorPAFHomo sapiensPlatelet Activating Factor-2.92024-11-1310.1016/j.celrep.2024.114422
5ZKQALipidPlatelet Activating FactorPAFHomo sapiensABT-491--2.92018-06-2010.1038/s41594-018-0068-y
5ZKPALipidPlatelet Activating FactorPAFHomo sapiensForopafant (SR27417)--2.812018-06-2010.1038/s41594-018-0068-y




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