Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L54 3.1675407
2R:R:N61 5.465429
3R:R:L85 3.7325496
4R:R:I89 5.63429
5R:R:N92 5.8625428
6R:R:F109 4.6425404
7R:R:I122 7.795436
8R:R:Y125 5.7775406
9R:R:Y126 5.008535
10R:R:L127 4.47254105
11R:R:Y128 7.4075429
12R:R:Y130 4.5875408
13R:R:L131 6.3275407
14R:R:D132 7.46429
15R:R:Y144 5.9425408
16R:R:V147 2.765408
17R:R:W154 7.2125405
18R:R:W169 6.8354109
19R:R:R183 8.72436
20R:R:D188 6.0025411
21R:R:P189 3.665412
22R:R:Y197 6.195414
23R:R:W207 8.088564
24R:R:R208 5.865414
25R:R:R212 6.458515
26R:R:P223 3.0425409
27R:R:F230 6.0325408
28R:R:Y231 8.2825129
29R:R:W235 7.1675405
30R:R:V256 4.2425407
31R:R:F260 5.814119
32R:R:F263 5.4575408
33R:R:F265 8.5854135
34R:R:Y267 9.5575407
35R:R:H268 5.625409
36R:R:D274 7.6025415
37R:R:L301 4.945405
38R:R:Y306 6.8054119
39R:R:V310 7.0325409
40R:R:Y314 5.5025409
41R:R:S315 5.245457
42R:R:F321 7.085458
43L:L:E6 5.61333610
44L:L:R8 6.846510
45L:L:H19 4.89570
46L:L:K29 4.32410
47L:L:P33 4.2575410
48L:L:I41 4.655410
49L:L:C51 5.12410
50L:L:N53 5.81440
51L:L:S56 5.278540
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:I18 L:L:I23 11.44442.94NoNo000
2L:L:A50 L:L:L15 17.88451.58NoNo000
3L:L:A50 L:L:I18 16.28061.62NoNo000
4L:L:L15 R:R:V36 19.48615.96NoNo003
5R:R:E40 R:R:V38 11.44444.28NoNo044
6R:R:V36 R:R:V38 21.0811.6NoNo034
7L:L:C51 R:R:V38 33.6795.12YesNo004
8L:L:E6 R:R:R208 12.790610.47YesYes104
9R:R:R208 R:R:Y197 59.59635.14YesYes144
10R:R:V186 R:R:Y197 26.38326.31NoYes114
11R:R:D188 R:R:V186 25.97552.92YesNo111
12R:R:D188 R:R:P189 48.87333.22YesYes112
13L:L:K29 R:R:P189 42.67513.35YesYes102
14L:L:I41 L:L:K29 39.67122.91YesYes100
15L:L:C51 L:L:I41 36.62926.55YesYes100
16L:L:L7 R:R:Y197 29.564110.55NoYes004
17L:L:L7 R:R:D188 26.00245.43NoYes001
18R:R:E198 R:R:R208 70.74064.65NoYes054
19R:R:E198 R:R:R183 74.288811.63NoYes056
20R:R:I122 R:R:R183 75.538716.28YesYes366
21L:L:V3 R:R:Y125 22.20115.05NoYes006
22R:R:S300 R:R:Y125 11.59223.82NoYes076
23L:L:A1 R:R:Y125 10.70076.67NoYes006
24R:R:I122 R:R:Y126 70.03493.63YesYes365
25R:R:S176 R:R:Y126 96.44512.54NoYes075
26R:R:L127 R:R:S176 97.1356.01YesNo057
27R:R:L127 R:R:W169 99.42214.56YesYes1059
28R:R:L131 R:R:W169 10013.67YesYes079
29R:R:L131 R:R:N92 83.50885.49YesYes078
30R:R:N92 R:R:Y128 20.73836.98YesYes289
31R:R:N61 R:R:Y128 18.35493.49YesYes299
32R:R:I89 R:R:N92 15.82374.25YesYes298
33R:R:I89 R:R:P311 31.52645.08YesNo099
34R:R:N65 R:R:P311 39.32844.89NoNo099
35R:R:L131 R:R:S135 16.64583YesNo077
36R:R:I89 R:R:S135 16.82056.19YesNo097
37R:R:N61 R:R:N65 17.71656.81YesNo099
38R:R:C90 R:R:N65 51.25224.72NoNo089
39R:R:C90 R:R:V68 31.89821.71NoNo089
40R:R:S315 R:R:V68 10.10483.23YesNo579
41R:R:F321 R:R:V68 20.14692.62YesNo589
42R:R:F321 R:R:I71 15.26817.54YesNo586
43R:R:C90 R:R:L87 18.69993.17NoNo086
44R:R:I71 R:R:L328 13.61952.85NoNo066
45R:R:L328 R:R:Y70 11.95733.52NoNo064
46R:R:K74 R:R:Y70 10.263913.14NoNo044
47R:R:A79 R:R:F72 10.26614.16NoNo056
48R:R:F72 R:R:L87 11.961810.96NoNo066
49R:R:R143 R:R:V139 11.03673.92NoNo098
50R:R:R143 R:R:Y314 29.88223.09NoYes099
51R:R:V310 R:R:Y314 52.17512.52YesYes099
52R:R:D132 R:R:V310 49.361610.22YesYes099
53R:R:D132 R:R:N92 48.42536.73YesYes298
54R:R:C95 R:R:L127 22.28623.17NoYes065
55R:R:C95 R:R:F124 21.44842.79NoNo064
56R:R:F124 R:R:L120 12.82426.09NoNo044
57R:R:L117 R:R:L120 11.93725.54NoNo054
58R:R:Y126 R:R:Y130 12.46365.96YesYes058
59R:R:R208 R:R:R212 12.42553.2YesYes145
60R:R:H268 R:R:S215 11.09942.79YesNo096
61R:R:V310 R:R:Y306 13.211810.09YesYes099
62R:R:R143 R:R:Y231 19.85356.17NoYes099
63R:R:S140 R:R:Y231 23.77136.36NoYes1299
64R:R:F230 R:R:S140 22.63346.61YesNo089
65R:R:V256 R:R:Y314 21.636610.09YesYes079
66R:R:V256 R:R:Y231 19.41223.79YesYes079
67R:R:A148 R:R:Y144 10.91125.34NoYes078
68R:R:F230 R:R:Y144 16.20454.13YesYes088
69R:R:I253 R:R:Y231 10.911215.71NoYes079
70R:R:S215 R:R:Y130 11.45333.82NoYes068
71L:L:V3 R:R:Y126 15.46087.57NoYes305
72R:R:P311 R:R:V310 10.23255.3NoYes099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:H19 R:R:C30 2.95 7 Yes No 0 4 0 1
L:L:C22 R:R:C30 7.28 7 No No 0 4 0 1
L:L:H19 R:R:N31 3.83 7 Yes No 0 6 0 1
R:R:F32 R:R:S33 5.28 0 No No 3 6 1 2
L:L:I18 R:R:F32 15.07 0 No No 0 3 0 1
L:L:N46 R:R:L34 5.49 0 No No 0 2 0 1
L:L:R48 R:R:E35 13.96 0 No No 0 3 0 1
L:L:L15 R:R:V36 5.96 0 No No 0 3 0 1
R:R:E40 R:R:V38 4.28 0 No No 4 4 1 1
L:L:C51 R:R:V38 5.12 1 Yes No 0 4 0 1
R:R:C39 R:R:R289 4.18 0 No No 8 3 2 1
R:R:E40 R:R:M41 10.83 0 No No 4 2 1 2
L:L:K49 R:R:E40 6.75 0 No No 0 4 0 1
R:R:L100 R:R:L54 2.77 0 No Yes 8 7 2 1
R:R:E103 R:R:L54 3.98 8 No Yes 6 7 2 1
R:R:L301 R:R:L54 2.77 0 Yes Yes 5 7 2 1
L:L:A1 R:R:L54 3.15 0 No Yes 0 7 0 1
R:R:A102 R:R:E121 3.02 0 No No 7 5 2 1
R:R:E121 R:R:I122 8.2 0 No Yes 5 6 1 1
L:L:S2 R:R:E121 5.75 0 No No 0 5 0 1
R:R:I122 R:R:Y126 3.63 3 Yes Yes 6 5 1 1
R:R:I122 R:R:R183 16.28 3 Yes Yes 6 6 1 2
L:L:V3 R:R:I122 3.07 3 No Yes 0 6 0 1
R:R:V129 R:R:Y125 7.57 0 No Yes 7 6 2 1
R:R:S300 R:R:Y125 3.82 0 No Yes 7 6 1 1
L:L:A1 R:R:Y125 6.67 0 No Yes 0 6 0 1
L:L:V3 R:R:Y125 5.05 3 No Yes 0 6 0 1
R:R:Y126 R:R:Y130 5.96 3 Yes Yes 5 8 1 2
R:R:S176 R:R:Y126 2.54 0 No Yes 7 5 2 1
R:R:A179 R:R:Y126 5.34 0 No Yes 5 5 2 1
L:L:V3 R:R:Y126 7.57 3 No Yes 0 5 0 1
R:R:V129 R:R:Y130 5.05 0 No Yes 7 8 2 2
R:R:E198 R:R:R183 11.63 0 No Yes 5 6 2 2
R:R:D188 R:R:V186 2.92 1 Yes No 1 1 1 1
R:R:V186 R:R:Y197 6.31 1 No Yes 1 4 1 1
L:L:P33 R:R:V186 5.3 1 Yes No 0 1 0 1
R:R:D188 R:R:P189 3.22 1 Yes Yes 1 2 1 1
R:R:D188 R:R:K192 12.44 1 Yes No 1 5 1 2
L:L:L7 R:R:D188 5.43 0 No Yes 0 1 0 1
R:R:K192 R:R:P189 3.35 1 No Yes 5 2 2 1
L:L:Q10 R:R:P189 4.74 1 No Yes 0 2 0 1
L:L:K29 R:R:P189 3.35 1 Yes Yes 0 2 0 1
R:R:R208 R:R:Y197 5.14 1 Yes Yes 4 4 1 1
L:L:L7 R:R:Y197 10.55 0 No Yes 0 4 0 1
L:L:P33 R:R:Y197 2.78 1 Yes Yes 0 4 0 1
R:R:E198 R:R:R208 4.65 0 No Yes 5 4 2 1
L:L:P33 R:R:N199 4.89 1 Yes No 0 4 0 1
R:R:R208 R:R:R212 3.2 1 Yes Yes 4 5 1 1
L:L:E6 R:R:R208 10.47 1 Yes Yes 0 4 0 1
R:R:N271 R:R:R212 8.44 0 No Yes 5 5 2 1
R:R:D274 R:R:R212 9.53 1 Yes Yes 5 5 1 1
R:R:R212 R:R:T275 6.47 1 Yes No 5 5 1 2
L:L:E6 R:R:R212 4.65 1 Yes Yes 0 5 0 1
R:R:L296 R:R:N271 2.75 0 No No 4 5 1 2
R:R:D274 R:R:R278 8.34 1 Yes No 5 4 1 1
R:R:D274 R:R:I292 4.2 1 Yes No 5 5 1 2
L:L:R8 R:R:D274 8.34 1 Yes Yes 0 5 0 1
L:L:E6 R:R:R278 4.65 1 Yes No 0 4 0 1
L:L:R8 R:R:R278 3.2 1 Yes No 0 4 0 1
R:R:D284 R:R:R280 7.15 0 No No 1 2 1 2
L:L:L12 R:R:D284 13.57 0 No No 0 1 0 1
L:L:R8 R:R:R289 9.6 1 Yes No 0 3 0 1
L:L:L12 R:R:R289 3.64 0 No No 0 3 0 1
L:L:E6 R:R:N293 2.63 1 Yes No 0 4 0 1
L:L:R8 R:R:N293 8.44 1 Yes No 0 4 0 1
L:L:E6 R:R:L296 6.63 1 Yes No 0 4 0 1
R:R:L301 R:R:S300 3 0 Yes No 5 7 2 1
L:L:A4 R:R:S300 3.42 0 No No 0 7 0 1
R:R:V36 R:R:V38 1.6 0 No No 3 4 1 1
R:R:N199 R:R:S184 1.49 0 No No 4 4 1 2
R:R:N293 R:R:V44 1.48 1 No No 4 4 1 2
R:R:E35 R:R:L34 1.33 0 No No 3 2 1 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9EJC_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.54
Number of Linked Nodes 334
Number of Links 367
Number of Hubs 51
Number of Links mediated by Hubs 178
Number of Communities 13
Number of Nodes involved in Communities 67
Number of Links involved in Communities 82
Path Summary
Number Of Nodes in MetaPath 73
Number Of Links MetaPath 72
Number of Shortest Paths 74467
Length Of Smallest Path 3
Average Path Length 17.9533
Length of Longest Path 43
Minimum Path Strength 1.475
Average Path Strength 5.76907
Maximum Path Strength 19.655
Minimum Path Correlation 0.7
Average Path Correlation 0.949991
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 54.5285
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 51.7788
Maximum Path Hubs % 100

Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ98146
Sequence
>9EJC_nogp_Chain_R
CNFSLEVSV CEMTTVVPY TWNVGILSL IFLINVLGN GLVTYIFCK 
HRSRAGAID ILLLGICLN SLCLSISLL AEVLMFLFP NIISTGLCR 
LEIFFYYLY VYLDIFSVV CVSLVRYLL VAYSTRSWP KKQSLGWVL 
TSAAWLIAL VLSGDACRH RSRVVDPVS KQAMCYENA GNMTADWRL 
HVRTVSVTA GFLLPLALL ILFYALTWC VVRRTKLQA RRKVRGVIV 
AVVVLFFVF CFPYHVLNL LDTLLRRRW IRDSCYTRG LINVGLAVT 
SLLQALYSA VVPLIYSCL GSLFRQRMY GLFQS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9EJCAOtherUclassifiedORF74Human gammaherpesvirus 8CXCL1-Gi1/β1/γ22.982025-09-03doi.org/10.1038/s41467-025-63457-4
9EJC (No Gprot) AOtherUclassifiedORF74Human gammaherpesvirus 8CXCL1-2.982025-09-03doi.org/10.1038/s41467-025-63457-4
8W1AAOtherUclassifiedORF74Human gammaherpesvirus 8---2.892025-08-27To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9EJC_nogp.zip



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