Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:F8 6.76333650
2R:R:Y50 6.86333637
3R:R:V77 7.4175487
4R:R:N84 5.8409
5R:R:D89 6.51479
6R:R:M97 5.02167607
7R:R:W109 8.5625818
8R:R:D112 8418
9R:R:C116 5.08419
10R:R:Q123 6.3475457
11R:R:F142 7.48408
12R:R:T154 5.545487
13R:R:W166 5.1275409
14R:R:H188 7.916521
15R:R:R196 4.66406
16R:R:Y201 8.7413
17R:R:Y216 5.876566
18R:R:Y236 5.816509
19R:R:W283 5.46167698
20R:R:W287 5.416507
21R:R:H315 5.6225406
22R:R:W316 7.46535
23R:R:N321 7.845499
24R:R:Y329 5.9575409
25R:R:F336 6.41167648
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:H188 R:R:L200 13.05123.86YesNo211
2R:R:L200 R:R:M190 27.71357.07NoNo012
3R:R:M190 R:R:R196 29.4484.96NoYes026
4R:R:F111 R:R:R196 33.35656.41NoYes076
5R:R:F111 R:R:P110 34.944514.45NoNo073
6R:R:P110 R:R:W109 38.15144.05NoYes038
7R:R:T99 R:R:W109 69.125810.92NoYes068
8R:R:Q123 R:R:T99 70.48268.5YesNo076
9L:L:F8 R:R:Q123 72.74135.86YesYes507
10L:L:?9 L:L:F8 47.34046.03NoYes000
11L:L:?9 R:R:H315 47.63349.55NoYes006
12R:R:H315 R:R:Y50 75.83263.27YesYes067
13R:R:P312 R:R:Y50 46.03762.78NoYes037
14R:R:N104 R:R:P312 39.54674.89NoNo043
15L:L:Q4 R:R:N104 38.02815.28NoNo004
16L:L:L2 L:L:Q4 34.82895.32NoNo000
17L:L:F8 L:L:R7 50.416314.97YesNo000
18L:L:R7 R:R:Y216 54.64087.2NoYes006
19R:R:H315 R:R:L286 70.69075.14YesNo067
20R:R:L286 R:R:W287 74.14433.42NoYes077
21R:R:L290 R:R:W287 16.18875.69NoYes057
22R:R:D112 R:R:W109 17.47617.82YesYes188
23R:R:D112 R:R:Y201 14.25389.2YesYes183
24R:R:P199 R:R:Y201 11.41694.17NoYes043
25R:R:L200 R:R:T107 12.90477.37NoNo214
26R:R:I106 R:R:T107 11.55573.04NoNo044
27L:L:L2 R:R:H304 33.11757.71NoNo002
28R:R:H304 R:R:V308 16.836315.22NoNo023
29R:R:W316 R:R:Y50 16.71297.72YesYes357
30R:R:I53 R:R:Y50 14.85517.25NoYes377
31R:R:I53 R:R:M97 13.53684.37NoYes077
32R:R:L220 R:R:W287 66.49714.56NoYes057
33R:R:L220 R:R:M173 63.49064.24NoNo057
34R:R:M125 R:R:M173 1004.33NoNo067
35R:R:M125 R:R:W166 98.1193.49NoYes069
36R:R:N84 R:R:W166 83.22544.52YesYes099
37R:R:I162 R:R:N84 77.17395.66NoYes089
38R:R:F81 R:R:I162 68.154510.05NoNo088
39R:R:F81 R:R:V77 65.46415.24NoYes087
40R:R:T76 R:R:V77 55.00314.76NoYes877
41R:R:T76 R:R:T78 54.23994.71NoNo078
42R:R:M74 R:R:T78 52.72123.01NoNo078
43R:R:M74 R:R:N71 46.492415.43NoNo075
44R:R:F336 R:R:N71 39.50823.62YesNo485
45R:R:F336 R:R:N333 29.59457.25YesNo088
46R:R:G330 R:R:N333 20.76783.39NoNo068
47R:R:G330 R:R:V64 18.95621.84NoNo069
48R:R:P326 R:R:V64 17.12921.77NoNo099
49R:R:D89 R:R:P326 11.55574.83YesNo099
50R:R:L91 R:R:W166 19.11043.42NoYes079
51R:R:L91 R:R:V122 13.53681.49NoNo075
52R:R:A318 R:R:L286 77.10453.15NoNo077
53R:R:A318 R:R:W283 75.8483.89NoYes078
54R:R:N321 R:R:W283 62.149210.17YesYes998
55R:R:N321 R:R:N325 56.63744.09YesNo099
56R:R:L134 R:R:N325 55.12646.87NoNo089
57R:R:L134 R:R:Y329 53.58463.52NoYes089
58R:R:I328 R:R:Y329 49.28316.04NoYes089
59R:R:I328 R:R:V275 47.70274.61NoNo088
60R:R:V275 R:R:Y236 46.23033.79NoYes089
61R:R:M235 R:R:Y236 34.86743.59NoYes079
62R:R:F142 R:R:M235 29.710111.2YesNo087
63R:R:F142 R:R:I239 13.40585.02YesNo088
64R:R:I162 R:R:M80 11.50942.92NoNo085
65R:R:S176 R:R:Y216 40.5727.63NoYes666
66R:R:M173 R:R:S176 42.04443.07NoNo076
67R:R:W207 R:R:Y216 26.06382.89NoYes056
68R:R:P208 R:R:W207 15.19436.76NoNo035
69R:R:P208 R:R:W204 13.32875.4NoNo033
70R:R:T217 R:R:Y216 11.48634.99NoYes056
71R:R:I239 R:R:L243 11.51712.85NoNo088
72R:R:H304 R:R:T307 14.80115.48NoNo024
73R:R:T307 R:R:V306 12.97411.59NoNo043
74L:L:R7 R:R:L290 15.325310.93NoNo005
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:L2 R:R:H304 7.71 0 No No 0 2 0 1
L:L:F3 R:R:E185 12.83 0 No No 0 1 0 1
L:L:Q4 R:R:Q37 7.68 0 No No 0 1 0 1
L:L:Q4 R:R:N104 5.28 0 No No 0 4 0 1
L:L:R7 R:R:Y216 7.2 0 No Yes 0 6 0 1
L:L:R7 R:R:L290 10.93 0 No No 0 5 0 1
L:L:F8 R:R:G120 4.52 5 Yes No 0 5 0 1
L:L:F8 R:R:Q123 5.86 5 Yes Yes 0 7 0 1
L:L:F8 R:R:G124 4.52 5 Yes No 0 5 0 1
L:L:?9 R:R:H315 9.55 0 No Yes 0 6 0 1
R:R:H315 R:R:Y50 3.27 0 Yes Yes 6 7 1 2
R:R:C96 R:R:Q123 6.1 0 No Yes 7 7 2 1
R:R:Q123 R:R:T99 8.5 5 Yes No 7 6 1 2
R:R:N104 R:R:P312 4.89 0 No No 4 3 1 2
R:R:G120 R:R:Q123 4.93 5 No Yes 5 7 1 1
R:R:A206 R:R:S176 3.42 6 No No 3 6 2 2
R:R:S176 R:R:Y216 7.63 6 No Yes 6 6 2 1
R:R:E185 R:R:H188 4.92 0 No Yes 1 1 1 2
R:R:A206 R:R:Y216 6.67 6 No Yes 3 6 2 1
R:R:T217 R:R:Y216 4.99 0 No Yes 5 6 2 1
R:R:L286 R:R:W287 3.42 0 No Yes 7 7 2 2
R:R:H315 R:R:L286 5.14 0 Yes No 6 7 1 2
R:R:L290 R:R:W287 5.69 0 No Yes 5 7 1 2
R:R:H304 R:R:T307 5.48 0 No No 2 4 1 2
R:R:H304 R:R:V308 15.22 0 No No 2 3 1 2
R:R:F311 R:R:H315 4.53 0 No Yes 4 6 2 1
R:R:W207 R:R:Y216 2.89 0 No Yes 5 6 2 1
R:R:P312 R:R:Y50 2.78 0 No Yes 3 7 2 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9M2F_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.04
Number of Linked Nodes 274
Number of Links 285
Number of Hubs 25
Number of Links mediated by Hubs 109
Number of Communities 9
Number of Nodes involved in Communities 35
Number of Links involved in Communities 41
Path Summary
Number Of Nodes in MetaPath 75
Number Of Links MetaPath 74
Number of Shortest Paths 32539
Length Of Smallest Path 3
Average Path Length 15.5655
Length of Longest Path 38
Minimum Path Strength 1.365
Average Path Strength 5.89809
Maximum Path Strength 18.86
Minimum Path Correlation 0.7
Average Path Correlation 0.924353
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 48.0962
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 32.5636
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNH2
PDB ResiduesL:L:?9
Environment DetailsOpen EMBL-EBI Page
CodeNH2
NameAMINO GROUP
Synonyms
Identifier
FormulaH2 N
Molecular Weight16.023
SMILES
PubChem123329
Formal Charge0
Total Atoms3
Total Chiral Atoms0
Total Bonds2
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9GZQ6
Sequence
>9M2F_nogp_Chain_R
LTFSSYYQH TSPVAAMFI VAYALIFLL CMVGNTLVC FIVLKNRHM 
HTVTNMFIL NLAVSDLLV GIFCMPTTL VDNLITGWP FDNATCKMS 
GLVQGMSVS ASVFTLVAI AVERFRCIV HPFREKLTL RKALVTIAV 
IWALALLIM CPSAVTLTV TREEHHFMV DARNRSYPL YSCWEAWPE 
KGMRRVYTT VLFSHIYLA PLALIVVMY ARIARKLCQ RRARVVHML 
VMVALFFTL SWLPLWALL LLIDYGQLS APQLHLVTV YAFPFAHWL 
AFFNSSANP IIYGYFNEN FRRG


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9M0RAPeptideNeuropeptide FFNPFF1Homo sapiensNeuropeptide VF-Gi1/β1/γ22.472025-07-23doi.org/10.1016/j.celrep.2025.116160
9M0R (No Gprot) APeptideNeuropeptide FFNPFF1Homo sapiensNeuropeptide VF-2.472025-07-23doi.org/10.1016/j.celrep.2025.116160
9M2FAPeptideNeuropeptide FFNPFF1Homo sapiensNeuropeptide FF-Gi1/β1/γ22.932025-07-23doi.org/10.1016/j.celrep.2025.116160
9M2F (No Gprot) APeptideNeuropeptide FFNPFF1Homo sapiensNeuropeptide FF-2.932025-07-23doi.org/10.1016/j.celrep.2025.116160




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9M2F_nogp.zip



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