Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 10.6156910
2R:R:L39 3.3975408
3R:R:F46 5.55667667
4R:R:D54 5.734559
5R:R:M62 7.025407
6R:R:W74 7.324528
7R:R:F91 8.7825446
8R:R:H98 7.1325478
9R:R:I111 4.92407
10R:R:K112 5.174585
11R:R:Y116 6.0225407
12R:R:Y149 6.77167615
13R:R:T150 6.8975403
14R:R:H154 9.38422
15R:R:K158 7.5775424
16R:R:F167 6.792514
17R:R:V169 4.2475413
18R:R:Y173 4.96407
19R:R:S177 3.1625405
20R:R:F182 10.822538
21R:R:P185 3.0575408
22R:R:Y193 5.8675409
23R:R:R195 3.9375405
24R:R:F244 5.422539
25R:R:W248 6.2325438
26R:R:L249 3.475406
27R:R:Y255 6.0275416
28R:R:W277 8.436514
29R:R:Y280 6.63667617
30R:R:N282 7.325409
31R:R:Y290 4.66409
32R:R:F293 7.822507
33R:R:F297 6.04667608
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y280 92.2995.44YesYes107
2R:R:W277 R:R:Y280 10.70326.75YesYes147
3R:R:M62 R:R:Y280 96.977914.37YesYes077
4R:R:A58 R:R:M62 12.66494.83NoYes077
5R:R:M62 R:R:S283 99.31083.07YesNo079
6R:R:D54 R:R:S283 99.56265.89YesNo099
7R:R:D54 R:R:L50 99.96028.14YesNo099
8R:R:H98 R:R:L50 1003.86YesNo089
9R:R:H98 R:R:S49 98.409411.16YesNo789
10R:R:L129 R:R:S49 99.98677.51NoNo079
11R:R:F46 R:R:L129 99.84764.87YesNo077
12R:R:D105 R:R:F46 48.16093.58NoYes097
13R:R:D105 R:R:T43 42.3097.23NoNo098
14R:R:I41 R:R:T43 41.07633.04NoNo078
15R:R:I41 R:R:N44 39.81718.5NoNo078
16R:R:F297 R:R:N44 26.60889.67YesNo088
17R:R:F297 R:R:V33 15.30922.62YesNo087
18R:R:S32 R:R:V33 12.47271.62NoNo087
19R:R:L39 R:R:N44 14.01028.24YesNo088
20R:R:F46 R:R:I102 85.98983.77YesNo078
21L:L:?1 R:R:V89 24.295816.58YesNo004
22R:R:S140 R:R:V89 22.85773.23NoNo074
23R:R:L90 R:R:S140 15.24956.01NoNo047
24L:L:?1 R:R:F167 56.16674.52YesYes104
25R:R:F167 R:R:N85 27.503519.33YesNo044
26R:R:N85 R:R:W84 26.26423.39NoNo046
27R:R:F64 R:R:W84 14.54720.04NoNo046
28R:R:F64 R:R:S67 12.9832.64NoNo044
29R:R:I70 R:R:S67 11.40571.55NoNo054
30R:R:V68 R:R:W84 12.00212.45NoNo036
31R:R:V68 R:R:W74 10.71642.45NoYes038
32R:R:F167 R:R:Y149 32.16913.09YesYes145
33R:R:T150 R:R:Y149 15.1177.49YesYes035
34R:R:I102 R:R:Y290 85.33374.84NoYes089
35R:R:L99 R:R:Y290 19.33864.69NoYes089
36R:R:L99 R:R:N286 18.15234.12NoNo089
37R:R:N282 R:R:N286 16.932912.26YesNo099
38R:R:N282 R:R:W248 13.0369.04YesYes098
39R:R:Y193 R:R:Y290 66.83683.97YesYes099
40R:R:S103 R:R:Y193 50.04977.63NoYes099
41R:R:M189 R:R:S103 26.68836.13NoNo089
42R:R:F244 R:R:M189 25.43578.71YesNo098
43R:R:F244 R:R:I96 11.81663.77YesNo398
44R:R:I96 R:R:P185 18.77533.39NoYes088
45R:R:S103 R:R:T192 28.98146.4NoNo097
46R:R:T192 R:R:Y107 27.64938.74NoNo078
47R:R:I111 R:R:Y107 19.01397.25YesNo078
48L:L:?1 R:R:S177 15.58094.18YesYes005
49R:R:L237 R:R:Y193 10.80267.03NoYes089
50R:R:I240 R:R:Y193 16.33644.84NoYes089
51R:R:F293 R:R:I240 15.03745.02YesNo078
52L:L:?1 R:R:F276 14.18917.91YesNo105
53R:R:F276 R:R:V272 12.71795.24NoNo054
54R:R:V272 R:R:W254 11.167111.03NoNo044
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D88 17.62 1 Yes No 0 6 0 1
L:L:?1 R:R:V89 16.58 1 Yes No 0 4 0 1
L:L:?1 R:R:S92 6.96 1 Yes No 0 6 0 1
L:L:?1 R:R:F167 4.52 1 Yes Yes 0 4 0 1
L:L:?1 R:R:S177 4.18 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F251 21.46 1 Yes No 0 6 0 1
L:L:?1 R:R:Y255 10.87 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F276 7.91 1 Yes No 0 5 0 1
L:L:?1 R:R:Y280 5.44 1 Yes Yes 0 7 0 1
R:R:A61 R:R:D88 4.63 1 No No 6 6 2 1
R:R:A61 R:R:Y280 4 1 No Yes 6 7 2 1
R:R:M62 R:R:Y280 14.37 0 Yes Yes 7 7 2 1
R:R:N65 R:R:W277 12.43 1 No Yes 6 4 2 2
R:R:N65 R:R:Y280 5.81 1 No Yes 6 7 2 1
R:R:F167 R:R:N85 19.33 1 Yes No 4 4 1 2
R:R:D88 R:R:Y280 3.45 1 No Yes 6 7 1 1
R:R:S140 R:R:V89 3.23 0 No No 7 4 2 1
R:R:I139 R:R:S177 3.1 0 No Yes 5 5 2 1
R:R:F167 R:R:Y149 3.09 1 Yes Yes 4 5 1 2
R:R:Y149 R:R:Y173 4.96 1 Yes Yes 5 7 2 2
R:R:F167 R:R:V169 3.93 1 Yes Yes 4 3 1 2
R:R:F167 R:R:Y255 3.09 1 Yes Yes 4 6 1 1
R:R:V169 R:R:Y173 7.57 1 Yes Yes 3 7 2 2
R:R:V169 R:R:Y255 3.79 1 Yes Yes 3 6 2 1
R:R:S177 R:R:Y173 3.82 0 Yes Yes 5 7 1 2
R:R:S178 R:R:Y255 6.36 0 No Yes 5 6 2 1
R:R:F251 R:R:F276 5.36 1 No No 6 5 1 1
R:R:F276 R:R:V272 5.24 1 No No 5 4 1 2
R:R:W277 R:R:Y280 6.75 1 Yes Yes 4 7 2 1
R:R:I176 R:R:S177 1.55 0 No Yes 4 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9M55_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.07
Number of Linked Nodes 246
Number of Links 267
Number of Hubs 33
Number of Links mediated by Hubs 130
Number of Communities 9
Number of Nodes involved in Communities 47
Number of Links involved in Communities 58
Path Summary
Number Of Nodes in MetaPath 55
Number Of Links MetaPath 54
Number of Shortest Paths 29382
Length Of Smallest Path 3
Average Path Length 14.6475
Length of Longest Path 33
Minimum Path Strength 1.21
Average Path Strength 6.15568
Maximum Path Strength 19.54
Minimum Path Correlation 0.7
Average Path Correlation 0.922005
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 45.3816
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.608
Maximum Path Hubs % 100

Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtB7Q337
Sequence
>9M55_nogp_Chain_R
LKLVLKTLA LVTIISSAV FGNLLVVTS VIRHHKLRI TTNYFIVSL 
ALADTLVAL FAMTFNASV TISGRWLFN QTVCDFWNS CDVLFSTAS 
IMHLCCISV DRYYAIIKP LEYPTKITG RTVAIMLTC AWVSSGLIS 
FIPIFLGWY TTNEHLVYK VEHPDECIF VVNKPYAII SSSVSFWIP 
CCIMLFTYW RIYVEATRQ EKMLCKAAK TLGIIMGAF ILCWLPFFL 
WYVSITMLV VDLLFWIGY LNSSLNPVI YAYFNREFR QAFKETLQA 
I


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9M55AAmineAdrenergicOct-Beta2Ixodes scapularisDPMF-chim(NtGi1-Gs)/β1/γ23.392025-12-1710.1093/pnasnexus/pgaf376
9M55 (No Gprot) AAmineAdrenergicOct-Beta2Ixodes scapularisDPMF-3.392025-12-1710.1093/pnasnexus/pgaf376
9M57AAmineAdrenergicOct-Beta2Ixodes scapularisOctopamine-chim(NtGi1-Gs)/β1/γ23.652025-12-1710.1093/pnasnexus/pgaf376
9M57 (No Gprot) AAmineAdrenergicOct-Beta2Ixodes scapularisOctopamine-3.652025-12-1710.1093/pnasnexus/pgaf376




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9M55_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.