Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y146 7.048517
2R:R:Y150 6.81125817
3R:R:F167 7.09457
4R:R:T173 5.6925407
5R:R:N175 5.068548
6R:R:H178 8.755449
7R:R:H180 12.5975438
8R:R:L181 6.5425409
9R:R:F182 4.9975408
10R:R:F185 10.06408
11R:R:R188 8.95618
12R:R:N192 9.8525418
13R:R:F200 9.525404
14R:R:F222 7.17506
15R:R:Q223 7.892517
16R:R:Y224 4.525408
17R:R:I226 10.7975416
18R:R:Y230 11.3625418
19R:R:W232 11.41639
20R:R:L234 4.54408
21R:R:E236 10.7975409
22R:R:H241 8.5925408
23R:R:Y254 6.6175404
24R:R:W263 9.835439
25R:R:P266 4.698509
26R:R:E281 5.4405
27R:R:W286 15.905479
28R:R:D287 6.582566
29R:R:W295 10.252516
30R:R:I298 7.6775417
31R:R:F313 8.048529
32R:R:F351 7.86167629
33R:R:Y355 9.225618
34R:R:F358 6.662587
35R:R:Q380 6.855409
36R:R:L382 2.5725405
37R:R:E398 8.2925458
38L:L:H1 7.954510
39L:L:D3 8.768510
40L:L:F6 6.304510
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:M366 R:R:R135 11.53544.96NoNo053
2L:L:L13 R:R:R135 10.7433.64NoNo003
3L:L:T7 R:R:F200 22.92285.19NoYes004
4L:L:T7 R:R:K195 23.787110.51NoNo007
5R:R:L370 R:R:M366 15.78274.24NoNo065
6L:L:S2 R:R:L370 17.90426.01NoNo006
7L:L:S2 R:R:L374 10.22534.5NoNo007
8L:L:D3 R:R:L374 14.86145.43YesNo007
9L:L:S2 R:R:E373 10.647910.06NoNo007
10R:R:E373 R:R:Y355 22.15378.98NoYes078
11R:R:R188 R:R:Y355 16.63434.12YesYes188
12L:L:D3 R:R:R188 12.29197.15YesYes108
13R:R:F182 R:R:L181 20.71683.65YesYes089
14R:R:L181 R:R:S184 51.30384.5YesNo099
15R:R:N229 R:R:S184 52.67097.45NoNo089
16R:R:N229 R:R:R188 10012.05NoYes088
17R:R:F185 R:R:L181 55.05036.09YesYes089
18R:R:F185 R:R:N229 48.009516.92YesNo088
19R:R:A160 R:R:F182 11.8084.16NoYes098
20R:R:H178 R:R:N175 22.43476.38YesYes498
21R:R:E236 R:R:H178 25.50939.85YesYes099
22R:R:E236 R:R:L181 91.245511.93YesYes099
23R:R:L170 R:R:N175 16.35534.12NoYes098
24R:R:E236 R:R:I177 21.03586.83YesNo099
25R:R:I177 R:R:Y239 19.97728.46NoNo098
26R:R:T173 R:R:Y239 10.02876.24YesNo078
27R:R:S184 R:R:W232 10.41336.18NoYes099
28R:R:E251 R:R:T173 11.77635.64NoYes067
29R:R:E236 R:R:L350 58.236814.58YesNo098
30R:R:F222 R:R:I226 32.56498.79YesYes066
31R:R:F200 R:R:L199 18.58898.53YesNo046
32R:R:D287 R:R:L199 17.69939.5YesNo066
33R:R:R277 R:R:W286 15.725620.99NoYes079
34R:R:R277 R:R:W273 34.483612NoNo078
35R:R:Q223 R:R:W273 34.2119.86YesNo178
36R:R:F222 R:R:Q223 17.25555.86YesYes067
37L:L:H1 R:R:Q223 23.91188.65YesYes107
38L:L:H1 R:R:I226 16.805417.23YesYes106
39L:L:H1 R:R:Y230 18.25924.36YesYes108
40R:R:H241 R:R:L312 13.130814.14YesNo088
41R:R:H241 R:R:I316 34.57233.98YesNo088
42R:R:I316 R:R:L240 35.63527.14NoNo089
43R:R:F351 R:R:L240 38.84084.87YesNo099
44R:R:F351 R:R:L350 56.8766.09YesNo098
45R:R:H241 R:R:N315 20.03638.93YesNo087
46R:R:F249 R:R:Y254 16.215918.57NoYes064
47R:R:E251 R:R:F249 17.97827NoNo066
48R:R:E281 R:R:R277 17.45210.47YesNo057
49R:R:E281 R:R:N291 12.26025.26YesNo055
50R:R:F313 R:R:I353 12.46315.07YesNo095
51R:R:F313 R:R:F351 16.90055.36YesYes299
52R:R:N315 R:R:R318 18.88897.23NoNo077
53R:R:R318 R:R:R322 17.73734.26NoNo077
54R:R:M321 R:R:R325 13.08856.2NoNo056
55R:R:R322 R:R:R325 14.2572.13NoNo076
56R:R:E373 R:R:Q369 11.49313.82NoNo077
57R:R:A160 R:R:C389 10.67963.61NoNo098
58R:R:F222 R:R:K195 22.062812.41YesNo067
59R:R:R188 R:R:Y150 13.823910.29YesYes187
60R:R:R188 R:R:Y230 16.336311.32YesYes188
61R:R:I226 R:R:R188 46.4128.77YesYes168
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:N132 R:R:S131 5.96 0 No No 3 2 1 2
L:L:L13 R:R:N132 4.12 0 No No 0 3 0 1
R:R:M366 R:R:R135 4.96 0 No No 5 3 1 1
R:R:E367 R:R:R135 8.14 0 No No 2 3 2 1
R:R:H136 R:R:L140 10.29 0 No No 1 3 1 2
R:R:L142 R:R:Y138 11.72 0 No No 6 4 1 2
R:R:E367 R:R:Y138 13.47 0 No No 2 4 2 2
L:L:F6 R:R:L139 6.09 1 Yes No 0 4 0 1
L:L:F6 R:R:L142 4.87 1 Yes No 0 6 0 1
R:R:K143 R:R:Y146 7.17 1 No Yes 5 7 1 1
R:R:D196 R:R:K143 6.91 1 No No 7 5 2 1
L:L:F6 R:R:K143 7.44 1 Yes No 0 5 0 1
R:R:Y146 R:R:Y150 5.96 1 Yes Yes 7 7 1 1
R:R:N192 R:R:Y146 5.81 1 Yes Yes 8 7 1 1
R:R:D196 R:R:Y146 8.05 1 No Yes 7 7 2 1
L:L:F6 R:R:Y146 8.25 1 Yes Yes 0 7 0 1
R:R:R188 R:R:Y150 10.29 1 Yes Yes 8 7 1 1
R:R:A189 R:R:Y150 4 0 No Yes 8 7 2 1
R:R:N192 R:R:Y150 13.96 1 Yes Yes 8 7 1 1
R:R:S378 R:R:Y150 7.63 0 No Yes 9 7 2 1
L:L:D3 R:R:Y150 8.05 1 Yes Yes 0 7 0 1
R:R:I226 R:R:R188 8.77 1 Yes Yes 6 8 1 1
R:R:N229 R:R:R188 12.05 0 No Yes 8 8 2 1
R:R:R188 R:R:Y230 11.32 1 Yes Yes 8 8 1 1
R:R:R188 R:R:Y355 4.12 1 Yes Yes 8 8 1 2
L:L:D3 R:R:R188 7.15 1 Yes Yes 0 8 0 1
R:R:F222 R:R:N192 4.83 0 Yes Yes 6 8 2 1
L:L:D3 R:R:N192 14.81 1 Yes Yes 0 8 0 1
R:R:D196 R:R:K195 5.53 1 No No 7 7 2 1
R:R:F222 R:R:K195 12.41 0 Yes No 6 7 2 1
L:L:T7 R:R:K195 10.51 0 No No 0 7 0 1
R:R:F200 R:R:L199 8.53 0 Yes No 4 6 1 2
R:R:D287 R:R:L199 9.5 6 Yes No 6 6 1 2
L:L:T7 R:R:F200 5.19 0 No Yes 0 4 0 1
L:L:L10 R:R:F200 15.83 0 No Yes 0 4 0 1
L:L:R14 R:R:F200 8.55 0 No Yes 0 4 0 1
R:R:D287 R:R:M219 4.16 6 Yes No 6 6 1 2
R:R:F222 R:R:Q223 5.86 0 Yes Yes 6 7 2 1
R:R:F222 R:R:I226 8.79 0 Yes Yes 6 6 2 1
R:R:Q223 R:R:W273 9.86 1 Yes No 7 8 1 2
R:R:Q223 R:R:W295 5.48 1 Yes Yes 7 6 1 1
R:R:I298 R:R:Q223 9.61 1 Yes Yes 7 7 2 1
L:L:H1 R:R:Q223 8.65 1 Yes Yes 0 7 0 1
L:L:H1 R:R:I226 17.23 1 Yes Yes 0 6 0 1
L:L:D3 R:R:I226 8.4 1 Yes Yes 0 6 0 1
R:R:V302 R:R:Y230 13.88 0 No Yes 6 8 2 1
R:R:Y230 R:R:Y355 15.89 1 Yes Yes 8 8 1 2
L:L:H1 R:R:Y230 4.36 1 Yes Yes 0 8 0 1
R:R:I298 R:R:W273 10.57 1 Yes No 7 8 2 2
R:R:C285 R:R:D287 6.22 0 No Yes 9 6 2 1
R:R:D287 R:R:I288 4.2 6 Yes No 6 5 1 1
L:L:S11 R:R:D287 8.83 6 No Yes 0 6 0 1
L:L:S11 R:R:I288 6.19 6 No No 0 5 0 1
R:R:N289 R:R:W295 23.73 0 No Yes 6 6 1 1
L:L:S8 R:R:N289 8.94 0 No No 0 6 0 1
R:R:I298 R:R:W295 4.7 1 Yes Yes 7 6 2 1
R:R:R299 R:R:W295 11 0 No Yes 6 6 2 1
L:L:H1 R:R:W295 6.35 1 Yes Yes 0 6 0 1
R:R:E373 R:R:Y355 8.98 0 No Yes 7 8 1 2
R:R:L370 R:R:M366 4.24 0 No No 6 5 1 1
L:L:S2 R:R:L370 6.01 0 No No 0 6 0 1
L:L:S2 R:R:E373 10.06 0 No No 0 7 0 1
L:L:S2 R:R:L374 4.5 0 No No 0 7 0 1
L:L:D3 R:R:L374 5.43 1 Yes No 0 7 0 1
L:L:F6 R:R:L374 4.87 1 Yes No 0 7 0 1
R:R:E373 R:R:Q369 3.82 0 No No 7 7 1 2
L:L:L13 R:R:R135 3.64 0 No No 0 3 0 1
L:L:T5 R:R:M366 3.01 0 No No 0 5 0 1
L:L:E15 R:R:I288 2.73 0 No No 0 5 0 1
L:L:L10 R:R:H136 2.57 0 No No 0 1 0 1
R:R:S153 R:R:Y150 2.54 0 No Yes 9 7 2 1
R:R:F193 R:R:Y150 2.06 0 No Yes 8 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7D3S_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.98
Number of Linked Nodes 266
Number of Links 293
Number of Hubs 40
Number of Links mediated by Hubs 148
Number of Communities 8
Number of Nodes involved in Communities 40
Number of Links involved in Communities 52
Path Summary
Number Of Nodes in MetaPath 62
Number Of Links MetaPath 61
Number of Shortest Paths 75983
Length Of Smallest Path 3
Average Path Length 14.6441
Length of Longest Path 37
Minimum Path Strength 1.675
Average Path Strength 8.09054
Maximum Path Strength 25
Minimum Path Correlation 0.7
Average Path Correlation 0.939075
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 54.191
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.1974
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP47872
Sequence
>7D3S_nogp_Chain_R
SSNEKRHSY LLKLKVMYT VGYSSSLVM LLVALGILC AFRRLHCTR 
NYIHMHLFV SFILRALSN FIKDAVLFS SDAHRAGCK LVMVLFQYC 
IMANYSWLL VEGLYLHTL LAISFFSER KYLQGFVAF GWGSPAIFV 
ALWAIARHF LEDVGCWDI NANASIWWI IRGPVILSI LINFILFIN 
ILRILMRKL RTQEVSHYK RLARSTLLL IPLFGIHYI VFAFSPEDA 
MEIQLFFEL ALGSFQGLV VAVLYCFLN GEVQLEVQK KWQQW


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainL
ProteinSecretin
UniProtP09683
Sequence
>7D3S_nogp_Chain_L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6WI9B1PeptideGlucagonSecretinHomo sapiensSecretin-Gs/β1/γ24.32020-08-12doi.org/10.1038/s41467-020-17791-4
6WI9 (No Gprot) B1PeptideGlucagonSecretinHomo sapiensSecretin-4.32020-08-12doi.org/10.1038/s41467-020-17791-4
6WZGB1PeptideGlucagonSecretinHomo sapiensSecretin-Gs/β1/γ22.32020-08-12doi.org/10.1038/s41467-020-17791-4
6WZG (No Gprot) B1PeptideGlucagonSecretinHomo sapiensSecretin-2.32020-08-12doi.org/10.1038/s41467-020-17791-4
7D3SB1PeptideGlucagonSecretinHomo sapiensSecretin-Gs/β1/γ22.92020-11-04doi.org/10.1016/j.bbrc.2020.08.042
7D3S (No Gprot) B1PeptideGlucagonSecretinHomo sapiensSecretin-2.92020-11-04doi.org/10.1016/j.bbrc.2020.08.042




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Download 7D3S_nogp.zip



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