Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L21 3.3375403
2R:R:T24 4.155404
3R:R:E31 11.5575444
4R:R:D67 4.458507
5R:R:Y69 8.865407
6R:R:Y111 7.99415
7R:R:W155 4.59469
8R:R:H165 7.11833614
9R:R:E179 5.675423
10R:R:F180 4.576505
11R:R:F188 6.03513
12R:R:P189 5.22414
13R:R:P204 4.46409
14R:R:T211 3.5125478
15R:R:M215 4.0275478
16R:R:V216 2.99485
17R:R:W245 5.894509
18R:R:I272 4.5425
19R:R:L276 5.155424
20R:R:Q280 6.075405
21R:R:Y284 6.04457
22R:R:N290 5.28409
23R:R:D304 5.22435
24R:R:T308 8.0825435
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:E31 R:R:T20 30.63374.23YesNo044
2R:R:L21 R:R:T20 29.99112.95YesNo034
3R:R:L21 R:R:S23 10.20493YesNo035
4R:R:I26 R:R:T24 17.54046.08NoYes014
5R:R:L21 R:R:T24 16.70064.42YesYes034
6R:R:F30 R:R:Y27 14.257514.44NoNo025
7R:R:E31 R:R:Y27 46.08098.98YesNo045
8R:R:E179 R:R:I26 14.76655.47YesNo231
9R:R:Q280 R:R:Y27 51.889510.15YesNo055
10R:R:E31 R:R:R34 32.69519.77YesNo444
11R:R:R34 R:R:V37 31.46712.62NoNo047
12R:R:V37 R:R:Y284 30.09297.57NoYes077
13R:R:C41 R:R:Y284 12.6672.69NoYes077
14R:R:M40 R:R:V43 11.12741.52NoNo076
15R:R:M40 R:R:Y284 12.51437.18NoYes577
16R:R:F110 R:R:Q280 54.25635.86NoYes075
17R:R:F110 R:R:W245 1004.01NoYes079
18R:R:R286 R:R:W245 95.164811NoYes099
19R:R:N290 R:R:R286 94.1159.64YesNo099
20R:R:I293 R:R:N290 95.36842.83NoYes089
21R:R:I293 R:R:Y294 94.4844.84NoNo089
22R:R:I70 R:R:Y294 93.88612.09NoNo089
23R:R:D67 R:R:I70 93.45972.8YesNo078
24R:R:D67 R:R:I55 32.7659.8YesNo077
25R:R:I55 R:R:M301 25.97022.92NoNo079
26R:R:K61 R:R:M301 24.61517.2NoNo059
27R:R:D304 R:R:K61 23.17094.15YesNo055
28R:R:D304 R:R:T54 12.56524.34YesNo357
29R:R:M305 R:R:T54 11.30557.53NoNo067
30R:R:D127 R:R:Y69 51.09434.6NoYes087
31R:R:T68 R:R:Y69 72.64286.24NoYes077
32R:R:D67 R:R:T68 73.53992.89YesNo077
33R:R:D127 R:R:S66 48.86125.89NoNo088
34R:R:R128 R:R:S66 45.30475.27NoNo098
35R:R:N72 R:R:V151 17.10782.96NoNo097
36R:R:V151 R:R:Y69 22.84012.52NoYes077
37R:R:N72 R:R:W155 14.01584.52NoYes699
38R:R:L21 R:R:V102 11.03832.98YesNo035
39R:R:E100 R:R:R99 10.99388.14NoNo027
40R:R:F110 R:R:Y111 69.70353.09NoYes075
41R:R:E175 R:R:F180 47.72243.5NoYes035
42R:R:E255 R:R:F180 44.8537NoYes055
43R:R:E179 R:R:E255 11.493.81YesNo235
44R:R:F241 R:R:W245 26.05936.01NoYes099
45R:R:F241 R:R:P204 20.2577.22NoYes099
46R:R:M215 R:R:R128 17.08872.48YesNo089
47R:R:R128 R:R:T230 29.71125.17NoNo098
48R:R:H165 R:R:L192 12.622511.57YesNo144
49R:R:E179 R:R:I272 13.36055.47YesYes235
50R:R:I272 R:R:L254 37.47932.85YesNo055
51R:R:L250 R:R:L254 33.44572.77NoNo055
52R:R:F246 R:R:L250 29.24673.65NoNo055
53R:R:F246 R:R:Y201 23.46994.13NoNo059
54R:R:N249 R:R:Y201 17.48959.3NoNo099
55R:R:N197 R:R:N249 14.4234.09NoNo069
56R:R:M228 R:R:T230 24.28431.51NoNo048
57R:R:K225 R:R:M228 21.561311.52NoNo034
58R:R:K225 R:R:V223 18.60921.52NoNo033
59R:R:G224 R:R:V223 15.60631.84NoNo033
60R:R:G224 R:R:I220 14.08581.76NoNo034
61R:R:I220 R:R:W226 11.00655.87NoNo043
62R:R:H165 R:R:Y111 20.390615.24YesYes145
63R:R:E175 R:R:Y111 48.23778.98NoYes035
64R:R:E255 R:R:I272 33.01316.83NoYes255
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 7RKX_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.72
Number of Linked Nodes 255
Number of Links 273
Number of Hubs 24
Number of Links mediated by Hubs 94
Number of Communities 8
Number of Nodes involved in Communities 34
Number of Links involved in Communities 39
Path Summary
Number Of Nodes in MetaPath 65
Number Of Links MetaPath 64
Number of Shortest Paths 32268
Length Of Smallest Path 3
Average Path Length 15.4401
Length of Longest Path 38
Minimum Path Strength 1.315
Average Path Strength 5.77747
Maximum Path Strength 16.485
Minimum Path Correlation 0.7
Average Path Correlation 0.923488
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.22581
Average % Of Corr. Nodes 41.5985
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 30.0982
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle
Gene OntologyCellular Component• midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle   • nuclear lumen   • cell periphery   • cell cortex   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • cytosol   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • organelle membrane   • lysosome   • Golgi apparatus   • endomembrane system   • cilium   • plasma membrane bounded cell projection   • ciliary basal body   • cell projection   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation   • G protein-coupled chemoattractant receptor activity   • C-C chemokine receptor activity   • molecular transducer activity   • chemokine receptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • cytokine receptor activity   • immune receptor activity   • C-C chemokine binding   • chemokine binding   • cytokine binding   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • cell chemotaxis   • chemotaxis   • response to external stimulus   • taxis   • cell migration   • cell motility   • locomotion   • calcium-mediated signaling   • immune response   • immune system process   • virion component   • host cell plasma membrane   • host cellular component   • host cell part   • host cell membrane
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP09703
Sequence
>7RKX_nogp_Chain_R
TLNSTEIYQ LFEYTRLGV WLMCIVGTF LNVLVITTI LYYRRKKKS 
PSDTYICNL AVADLLIVV GLPFFLEYA KHHPKLSRE VVCSGLNAC 
FYICLFAGV CFLINLSMD RYCVIVWTC WVVIFWILA VLMGMPHYL 
MYSHTNNEC VGEFANEGW FPVFLNTKV NICGYLAPI ALMAYTYNR 
MVRFIINYV GKWHMQTLH VLLVVVVSF ASFWFPFNL ALFLESIRL 
LAGVYNDTL QNVIIFCLY VGQFLAYVR ACLNPGIYI LVGTQMRKD 
MWTTL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7RKYAOtherUnclassifiedUS27Human betaherpesvirus 5-GDPGi1/β1/γ23.82022-01-26doi.org/10.1126/sciadv.abl5442
7RKY (No Gprot) AOtherUnclassifiedUS27Human betaherpesvirus 5-GDP3.82022-01-26doi.org/10.1126/sciadv.abl5442
7RKXAOtherUnclassifiedUS27Human betaherpesvirus 5--Gi1/β1/γ23.12022-01-2610.1126/sciadv.abl5442
7RKX (No Gprot) AOtherUnclassifiedUS27Human betaherpesvirus 5--3.12022-01-2610.1126/sciadv.abl5442




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Download 7RKX_nogp.zip



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