Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F33 6.23406
2R:R:T42 5.375486
3R:R:F49 5.184536
4R:R:N56 5.0575409
5R:R:T59 6.71449
6R:R:L62 4.2825448
7R:R:Y66 7.92405
8R:R:M69 3.88508
9R:R:Y76 6.34598
10R:R:L91 8.255438
11R:R:L95 5.0875407
12R:R:R97 7.0825406
13R:R:W99 8.69486
14R:R:F106 4.33254127
15R:R:L115 3.88405
16R:R:E119 8.1775406
17R:R:Y123 10.1254157
18R:R:T125 4.884109
19R:R:Y137 7.8775407
20R:R:I140 2.2625468
21R:R:C141 3.215467
22R:R:V155 4.81497
23R:R:W163 6.326559
24R:R:E180 5.28754134
25R:R:R246 8.2025475
26R:R:Y267 8.42428
27R:R:I270 2.57468
28R:R:L274 4.735468
29R:R:V304 2.775428
30R:R:W311 9.2225408
31R:R:R318 8.202507
32R:R:I320 2.9575416
33R:R:I322 5.16476
34R:R:N323 5.9825475
35R:R:D326 6.064165
36R:R:S333 3.6325417
37R:R:F336 4.7825415
38R:R:N337 3.9625416
39R:R:Q342 5.03406
40R:R:N351 7.0425409
41R:R:P352 3.704509
42R:R:L354 4.3675408
43R:R:Y355 5.405409
44R:R:N356 10.9448
45R:R:Y362 7.872549
46L:L:V2 4.9975410
47L:L:P3 8.812510
48L:L:F5 8.61167610
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:F5 R:R:Q334 12.40524.68YesNo005
2L:L:F5 R:R:Y321 27.696114.44YesNo005
3L:L:P3 R:R:Y321 28.580216.69YesNo005
4L:L:P3 L:L:V2 39.66453.53YesYes100
5L:L:V2 R:R:L341 44.125610.43YesNo006
6R:R:L341 R:R:Q342 18.84363.99NoYes066
7R:R:C45 R:R:Q342 14.10126.1NoYes076
8R:R:C45 R:R:L95 13.16884.76NoYes077
9R:R:L95 R:R:T42 14.12535.9YesYes076
10R:R:L35 R:R:W99 12.14262.28NoYes066
11R:R:N337 R:R:S333 12.6492.98YesYes167
12R:R:L341 R:R:Y345 24.74357.03NoNo068
13R:R:L91 R:R:Y345 23.811115.24YesNo088
14R:R:L91 R:R:L95 13.37785.54YesYes087
15R:R:L95 R:R:L98 10.09034.15YesNo076
16L:L:P3 R:R:R318 86.91697.21YesYes007
17R:R:E119 R:R:R318 95.20135.82YesYes067
18R:R:E119 R:R:F173 97.14928.16YesNo065
19R:R:F173 R:R:M248 97.347511.2NoNo056
20R:R:M248 R:R:P172 97.54043.35NoNo069
21R:R:G171 R:R:P172 98.0874.06NoNo059
22R:R:G171 R:R:Y116 98.25842.9NoNo056
23R:R:L167 R:R:Y116 99.17487.03NoNo046
24R:R:L167 R:R:W163 99.30874.56NoYes049
25R:R:S83 R:R:W163 99.89826.18NoYes099
26R:R:S83 R:R:T125 1003.2NoYes099
27R:R:M80 R:R:T125 27.35856.02NoYes1099
28R:R:M80 R:R:N351 35.25718.41NoYes099
29R:R:N351 R:R:P352 24.40054.89YesYes099
30R:R:D84 R:R:T125 49.25925.78NoYes099
31R:R:D84 R:R:N351 27.07186.73NoYes099
32R:R:D84 R:R:N56 21.99184.04NoYes099
33R:R:N56 R:R:P352 11.00663.26YesYes099
34R:R:N356 R:R:P352 26.21713.26YesYes089
35R:R:N356 R:R:Y362 25.027516.28YesYes489
36R:R:L62 R:R:Y362 28.34457.03YesYes489
37R:R:L369 R:R:L62 24.1545.54NoYes058
38R:R:L369 R:R:Y66 19.80555.86NoYes055
39R:R:M69 R:R:Y66 13.24923.59YesYes085
40R:R:N351 R:R:Y355 37.1468.14YesYes099
41R:R:L77 R:R:Y355 30.03783.52NoYes099
42R:R:L77 R:R:T73 30.91932.95NoNo098
43R:R:E135 R:R:T73 29.85294.23NoNo088
44R:R:E135 R:R:Y76 25.21234.49NoYes088
45R:R:L158 R:R:Y76 13.58413.52NoYes058
46R:R:M129 R:R:T125 25.73484.52NoYes1079
47R:R:F307 R:R:M129 33.55042.49NoNo097
48L:L:F1 L:L:P3 28.205110.11NoYes000
49L:L:F1 R:R:L115 27.30764.87NoYes005
50R:R:C111 R:R:L115 22.71793.17NoYes095
51R:R:C111 R:R:C235 13.25727.28NoNo099
52R:R:C235 R:R:V105 12.2825.12NoNo095
53R:R:E180 R:R:V105 11.3635.7YesNo045
54L:L:E9 L:L:F5 13.45284.66NoYes100
55L:L:E9 R:R:R236 10.082310.47NoNo105
56R:R:F307 R:R:L263 26.92443.65NoNo098
57R:R:L263 R:R:Y267 25.646411.72NoYes288
58R:R:L300 R:R:Y267 21.423810.55NoYes098
59R:R:I270 R:R:L300 16.0252.85YesNo089
60R:R:C141 R:R:I270 12.78031.64YesYes678
61R:R:C141 R:R:Y137 11.71138.06YesYes077
62L:L:M13 R:R:M330 10.77355.78NoNo004
63L:L:P3 R:R:N337 13.75296.52YesYes106
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:Q14 R:R:C30 3.05 0 No No 0 7 0 1
R:R:F33 R:R:Q334 10.54 0 Yes No 6 5 2 1
L:L:T6 R:R:S101 6.4 1 No No 0 5 0 1
R:R:F231 R:R:R102 10.69 0 No No 4 6 2 1
L:L:Y7 R:R:R102 6.17 0 No No 0 6 0 1
R:R:C111 R:R:L115 3.17 0 No Yes 9 5 2 1
R:R:L115 R:R:S114 4.5 0 Yes No 5 6 1 2
R:R:L115 R:R:V177 2.98 0 Yes No 5 6 1 2
L:L:F1 R:R:L115 4.87 0 No Yes 0 5 0 1
R:R:E119 R:R:R318 5.82 0 Yes Yes 6 7 2 1
L:L:R12 R:R:D182 8.34 0 No No 0 4 0 1
L:L:T6 R:R:R236 14.23 1 No No 0 5 0 1
L:L:G8 R:R:R236 4.5 0 No No 0 5 0 1
L:L:E9 R:R:R236 10.47 1 No No 0 5 0 1
R:R:L249 R:R:R318 4.86 0 No Yes 5 7 2 1
R:R:R318 R:R:T252 3.88 0 Yes No 7 7 1 2
R:R:F314 R:R:R318 19.24 0 No Yes 6 7 2 1
R:R:G317 R:R:N337 3.39 1 No Yes 6 6 2 1
L:L:P3 R:R:R318 7.21 1 Yes Yes 0 7 0 1
L:L:P3 R:R:Y321 16.69 1 Yes No 0 5 0 1
L:L:F5 R:R:Y321 14.44 1 Yes No 0 5 0 1
R:R:S333 R:R:T324 3.2 1 Yes No 7 4 1 1
L:L:F5 R:R:T324 5.19 1 Yes No 0 4 0 1
R:R:D326 R:R:E325 3.9 16 Yes No 5 3 1 2
R:R:D326 R:R:S327 4.42 16 Yes No 5 5 1 1
R:R:D326 R:R:R328 10.72 16 Yes No 5 4 1 2
L:L:E17 R:R:D326 5.2 16 No Yes 0 5 0 1
L:L:E17 R:R:S327 8.62 16 No No 0 5 0 1
R:R:M330 R:R:S333 3.07 1 No Yes 4 7 1 1
L:L:F5 R:R:M330 17.42 1 Yes No 0 4 0 1
L:L:M13 R:R:M330 5.78 0 No No 0 4 0 1
R:R:N337 R:R:S333 2.98 1 Yes Yes 6 7 1 1
L:L:F5 R:R:S333 5.28 1 Yes Yes 0 7 0 1
L:L:F5 R:R:Q334 4.68 1 Yes No 0 5 0 1
L:L:L10 R:R:Q334 5.32 0 No No 0 5 0 1
L:L:V2 R:R:N337 2.96 1 Yes Yes 0 6 0 1
L:L:P3 R:R:N337 6.52 1 Yes Yes 0 6 0 1
R:R:L341 R:R:Q342 3.99 0 No Yes 6 6 1 2
R:R:L341 R:R:Y345 7.03 0 No No 6 8 1 2
L:L:V2 R:R:L341 10.43 1 Yes No 0 6 0 1
L:L:G8 R:R:S232 1.86 0 No No 0 3 0 1
L:L:L10 R:R:C30 1.59 0 No No 0 7 0 1
R:R:D182 R:R:Q181 1.31 0 No No 4 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IBV_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.9
Number of Linked Nodes 268
Number of Links 310
Number of Hubs 48
Number of Links mediated by Hubs 169
Number of Communities 16
Number of Nodes involved in Communities 69
Number of Links involved in Communities 81
Path Summary
Number Of Nodes in MetaPath 64
Number Of Links MetaPath 63
Number of Shortest Paths 60611
Length Of Smallest Path 3
Average Path Length 18.6292
Length of Longest Path 36
Minimum Path Strength 1.29
Average Path Strength 6.09402
Maximum Path Strength 16.1833
Minimum Path Correlation 0.7
Average Path Correlation 0.930908
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.33333
Average % Of Corr. Nodes 42.2293
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.6223
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• binding   • tetrapyrrole binding   • heme binding   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding   • hormone binding   • peptide receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • G protein-coupled peptide receptor activity   • signaling receptor activity   • transmembrane signaling receptor activity   • electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • G protein-coupled receptor signaling pathway   • signal transduction   • cell communication   • cellular anatomical structure   • periplasmic space   • intracellular anatomical structure   • cytoplasm   • cytosol   • cell periphery   • plasma membrane   • membrane   • molecular function activator activity   • signaling receptor binding   • signaling receptor activator activity   • hormone activity   • protein binding   • molecular function regulator activity   • signaling receptor regulator activity   • receptor ligand activity   • motilin receptor binding   • G protein-coupled receptor binding   • extracellular region   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtO43193
Sequence
>8IBV_nogp_Chain_R
CSPFPLGAL VPVTAVCLC LFVVGVSGN VVTVMLIGR YRDMRTTTN 
LYLGSMAVS DLLILLGLP FDLYRLWRS RPWVFGPLL CRLSLYVGE 
GCTYATLLH MTALSVERY LAICRPVTR RRVRALIAV LWAVALLSA 
GPFLFLVGV EQDAEAAAL FSRECRPSP AQLGALRVM LWVTTAYFF 
LPFLCLSIL YGLIGRELW SGHRQTVRV LLVVVLAFI ICWLPFHVG 
RIIYINTED SRMMYFSQY FNIVALQLF YLSASINPI LYNLISKKY 
RAAAFKLLL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IBVAPeptideMotilinMotilinHomo sapiensMotilin-chim(NtGi1-Gs-CtGq)/β1/γ23.192023-04-1210.1126/sciadv.ade9020
8IBV (No Gprot) APeptideMotilinMotilinHomo sapiensMotilin-3.192023-04-1210.1126/sciadv.ade9020
8IBUAPeptideMotilinMotilinHomo sapiensErythromycin-A-chim(NtGi1-Gs-CtGq)/β1/γ23.512023-04-1210.1126/sciadv.ade9020
8IBU (No Gprot) APeptideMotilinMotilinHomo sapiensErythromycin-A-3.512023-04-1210.1126/sciadv.ade9020




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8IBV_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.