Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.723081310
2R:R:F33 6.118516
3R:R:T42 3.3875466
4R:R:L62 4.438528
5R:R:Y66 12.01425
6R:R:Y76 9.376588
7R:R:D84 4.55167649
8R:R:L91 6.45408
9R:R:R97 5.5775416
10R:R:Y116 7.255406
11R:R:E119 10.0225416
12R:R:Y123 5.97286717
13R:R:T125 4.19449
14R:R:H128 7.06408
15R:R:S133 4.01254109
16R:R:Y137 8.616537
17R:R:L176 3.56405
18R:R:L249 4.77405
19R:R:L266 6.31407
20R:R:Y267 9.0954108
21R:R:W311 9.0675408
22R:R:V316 4.325456
23R:R:R318 8.594517
24R:R:I320 4.3475456
25R:R:I322 2.9975406
26R:R:F344 4.954509
27R:R:N351 7.222549
28R:R:L354 2.97408
29R:R:Y362 6.79629
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:L341 11.696210.42YesNo006
2R:R:L341 R:R:Y345 11.25825.86NoNo068
3R:R:L91 R:R:Y345 37.404712.89YesNo088
4R:R:C45 R:R:L91 24.54664.76NoYes078
5R:R:C45 R:R:L95 15.20257.94NoNo077
6R:R:L95 R:R:T42 11.4362.95NoYes076
7L:L:?1 R:R:F344 34.33893.34YesYes009
8R:R:F344 R:R:Y345 28.1928.25YesNo098
9L:L:?1 R:R:R318 52.69737.49YesYes107
10R:R:L249 R:R:R318 54.90784.86YesYes057
11R:R:L249 R:R:M248 54.37195.65YesNo056
12R:R:M248 R:R:P172 1003.35NoNo069
13R:R:G171 R:R:P172 99.60074.06NoNo059
14R:R:G171 R:R:Y116 99.1552.9NoYes056
15R:R:L167 R:R:Y116 97.32079.38NoYes046
16R:R:L167 R:R:W163 96.84923.42NoNo049
17R:R:H128 R:R:W163 95.4044.23YesNo089
18R:R:H128 R:R:M80 72.30785.25YesNo089
19R:R:M80 R:R:N351 45.05878.41NoYes099
20R:R:N351 R:R:Y355 20.553410.47YesNo099
21R:R:V303 R:R:Y355 19.61827.57NoNo089
22R:R:M80 R:R:T125 26.71583.01NoYes099
23R:R:D84 R:R:T125 24.26834.34YesYes499
24R:R:D84 R:R:N56 47.0094.04YesNo099
25R:R:A81 R:R:N56 43.57223.13NoNo099
26R:R:D84 R:R:N351 26.15676.73YesYes499
27R:R:A81 R:R:T59 33.4633.36NoNo099
28R:R:T59 R:R:Y362 27.59949.99NoYes299
29R:R:L62 R:R:Y362 14.618.21YesYes289
30R:R:H128 R:R:S79 26.2349.76YesNo089
31R:R:I159 R:R:S79 25.28083.1NoNo089
32R:R:I159 R:R:Y76 21.63286.04NoYes888
33R:R:L245 R:R:L249 15.30814.15NoYes045
34R:R:L176 R:R:L245 14.63064.15YesNo054
35R:R:L176 R:R:V177 12.5671.49YesNo056
36R:R:F344 R:R:T122 45.18243.89YesNo098
37R:R:F344 R:R:W311 46.68693.01YesYes098
38R:R:L126 R:R:W311 41.802311.39NoYes078
39R:R:L126 R:R:P259 40.56833.28NoNo079
40R:R:P259 R:R:T130 38.01015.25NoNo997
41R:R:C262 R:R:T130 36.83535.07NoNo067
42R:R:C262 R:R:S133 35.58071.72NoYes069
43R:R:L266 R:R:S133 28.06573YesYes079
44R:R:L266 R:R:Y137 19.002516.41YesYes077
45R:R:C141 R:R:Y137 10.9625.38NoYes377
46R:R:F314 R:R:R318 15.735816.03NoYes067
47R:R:F314 R:R:H315 15.06853.39NoNo068
48R:R:F256 R:R:H315 14.396115.84NoNo088
49R:R:V299 R:R:V303 10.09121.6NoNo088
50R:R:E119 R:R:F173 22.830818.66YesNo165
51R:R:F173 R:R:Y123 23.50837.22NoYes157
52R:R:E119 R:R:T122 22.67364.23YesNo168
53R:R:T122 R:R:Y123 23.24043.75NoYes187
54R:R:F173 R:R:M248 46.18467.46NoNo056
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:F33 4.17 1 Yes Yes 0 6 0 1
L:L:?1 R:R:D94 10.22 1 Yes No 0 7 0 1
L:L:?1 R:R:R97 12.48 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L115 5.69 1 Yes No 0 5 0 1
L:L:?1 R:R:E234 5.44 1 Yes No 0 4 0 1
L:L:?1 R:R:R236 6.65 1 Yes No 0 5 0 1
L:L:?1 R:R:R318 7.49 1 Yes Yes 0 7 0 1
L:L:?1 R:R:Y321 16.05 1 Yes No 0 5 0 1
L:L:?1 R:R:Q334 11.85 1 Yes No 0 5 0 1
L:L:?1 R:R:N337 3.76 1 Yes No 0 6 0 1
L:L:?1 R:R:L341 10.42 1 Yes No 0 6 0 1
L:L:?1 R:R:F344 3.34 1 Yes Yes 0 9 0 1
R:R:F33 R:R:Q334 7.03 1 Yes No 6 5 1 1
R:R:F33 R:R:Y335 4.13 1 Yes No 6 4 1 2
R:R:F33 R:R:I338 13.82 1 Yes No 6 6 1 2
R:R:F344 R:R:I87 6.28 0 Yes No 9 7 1 2
R:R:D94 R:R:R97 3.57 1 No Yes 7 6 1 1
R:R:L115 R:R:R97 3.64 1 No Yes 5 6 1 1
R:R:E234 R:R:S101 8.62 0 No No 4 5 1 2
R:R:L115 R:R:S114 4.5 1 No No 5 6 1 2
R:R:E119 R:R:T122 4.23 1 Yes No 6 8 2 2
R:R:E119 R:R:Y123 6.73 1 Yes Yes 6 7 2 2
R:R:E119 R:R:R318 10.47 1 Yes Yes 6 7 2 1
R:R:T122 R:R:Y123 3.75 1 No Yes 8 7 2 2
R:R:F344 R:R:T122 3.89 0 Yes No 9 8 1 2
R:R:R318 R:R:Y123 4.12 1 Yes Yes 7 7 1 2
R:R:L249 R:R:R318 4.86 0 Yes Yes 5 7 2 1
R:R:F344 R:R:W311 3.01 0 Yes Yes 9 8 1 2
R:R:F314 R:R:R318 16.03 0 No Yes 6 7 2 1
R:R:N337 R:R:Y321 3.49 1 No No 6 5 1 1
R:R:L341 R:R:Y345 5.86 0 No No 6 8 1 2
R:R:F344 R:R:Y345 8.25 0 Yes No 9 8 1 2
L:L:?1 R:R:L98 2.84 1 Yes No 0 6 0 1
R:R:R97 R:R:V105 2.62 1 Yes No 6 5 1 2
R:R:S333 R:R:Y321 2.54 0 No No 7 5 2 1
R:R:P32 R:R:Q334 1.58 0 No No 3 5 2 1
R:R:F33 R:R:P34 1.44 1 Yes No 6 8 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IBU_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.9
Number of Linked Nodes 247
Number of Links 276
Number of Hubs 29
Number of Links mediated by Hubs 122
Number of Communities 10
Number of Nodes involved in Communities 55
Number of Links involved in Communities 68
Path Summary
Number Of Nodes in MetaPath 55
Number Of Links MetaPath 54
Number of Shortest Paths 56944
Length Of Smallest Path 3
Average Path Length 18.3165
Length of Longest Path 36
Minimum Path Strength 1.465
Average Path Strength 5.64636
Maximum Path Strength 19.33
Minimum Path Correlation 0.7
Average Path Correlation 0.923851
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 38.493
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.89
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeERY
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeERY
NameErythromycin
Synonymsérythromycine
Identifier
FormulaC37 H67 N O13
Molecular Weight733.927
SMILES
PubChem12560
Formal Charge0
Total Atoms118
Total Chiral Atoms18
Total Bonds120
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtO43193
Sequence
>8IBU_nogp_Chain_R
CSPFPLGAL VPVTAVCLC LFVVGVSGN VVTVMLIGR YRDMRTTTN 
LYLGSMAVS DLLILLGLP FDLYRLWRS RPWVFGPLL CRLSLYVGE 
GCTYATLLH MTALSVERY LAICRPLRA RVLVTRRRV RALIAVLWA 
VALLSAGPF LFLVGVEQE CRPSPAQLG ALRVMLWVT TAYFFLPFL 
CLSILYGLI GRELWSGHR QTVRVLLVV VLAFIICWL PFHVGRIIY 
INTEDSRMM YFSQYFNIV ALQLFYLSA SINPILYNL ISKKYRAAA 
FKL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IBVAPeptideMotilinMotilinHomo sapiensMotilin-chim(NtGi1-Gs-CtGq)/β1/γ23.192023-04-1210.1126/sciadv.ade9020
8IBV (No Gprot) APeptideMotilinMotilinHomo sapiensMotilin-3.192023-04-1210.1126/sciadv.ade9020
8IBUAPeptideMotilinMotilinHomo sapiensErythromycin-A-chim(NtGi1-Gs-CtGq)/β1/γ23.512023-04-1210.1126/sciadv.ade9020
8IBU (No Gprot) APeptideMotilinMotilinHomo sapiensErythromycin-A-3.512023-04-1210.1126/sciadv.ade9020




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Download 8IBU_nogp.zip



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