Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.421110
2R:R:F33 9.3475426
3R:R:N56 5.46409
4R:R:M69 5.8875408
5R:R:Y76 7.9225408
6R:R:L77 6.0875409
7R:R:M80 5.665449
8R:R:L91 5.2075408
9R:R:F106 9.916507
10R:R:E119 8.1125416
11R:R:Y123 7.17833617
12R:R:Y137 8.44507
13R:R:R142 4.644566
14R:R:W163 5.256509
15R:R:P237 4.3525405
16R:R:F260 4.93407
17R:R:L266 6.5575407
18R:R:Y267 6.98458
19R:R:W311 8.8125408
20R:R:R318 8.73617
21R:R:Y335 10.4525424
22R:R:F344 6.618519
23R:R:Y345 5.3408
24R:R:Y362 5.49739
25R:R:L369 6.09505
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:L245 40.93317.04YesNo004
2R:R:L245 R:R:P237 30.71673.28NoYes045
3R:R:P237 R:R:R236 17.70082.88YesNo055
4R:R:E234 R:R:R236 15.77217.45NoNo045
5R:R:E234 R:R:R102 13.83361.16NoNo046
6L:L:?1 R:R:D94 36.21453.83YesNo007
7R:R:D94 R:R:Y345 16.51274.6NoYes078
8R:R:L91 R:R:Y345 49.24484.69YesYes088
9R:R:C45 R:R:L91 39.74514.76NoYes078
10R:R:C45 R:R:L95 37.81634.76NoNo077
11R:R:L95 R:R:T42 35.87787.37NoNo076
12R:R:T42 R:R:W99 33.929812.13NoNo066
13R:R:L38 R:R:W99 24.045215.94NoNo066
14R:R:F33 R:R:L38 22.03943.65YesNo066
15L:L:?1 R:R:L341 11.85678.6YesNo006
16R:R:L341 R:R:Y345 10.74564.69NoYes068
17L:L:?1 R:R:F344 34.92065.5YesYes109
18R:R:F344 R:R:Y345 32.76097.22YesYes098
19R:R:F33 R:R:I338 10.28866.28YesNo066
20L:L:?1 R:R:E119 35.329510.48YesYes106
21R:R:E119 R:R:Y123 33.3674.49YesYes167
22R:R:Y123 R:R:Y255 10015.89YesNo177
23R:R:L127 R:R:Y255 99.74518.21NoNo077
24R:R:L127 R:R:L162 97.6966.92NoNo078
25R:R:L158 R:R:L162 96.26746.92NoNo058
26R:R:L158 R:R:Y76 95.49784.69NoYes058
27R:R:L132 R:R:Y76 86.96498.21NoYes088
28R:R:L132 R:R:L77 86.12314.15NoYes089
29R:R:L77 R:R:Y355 59.41323.52YesNo099
30R:R:V303 R:R:Y355 19.09098.83NoNo089
31R:R:L354 R:R:V303 12.0252.98NoNo088
32L:L:?1 R:R:R318 37.12365.49YesYes107
33R:R:R318 R:R:Y123 33.34785.14YesYes177
34R:R:M129 R:R:Y355 43.22757.18NoNo079
35R:R:M129 R:R:N351 20.99095.61NoNo479
36R:R:D84 R:R:N351 20.66866.73NoNo099
37R:R:D84 R:R:N56 13.50175.39NoYes099
38R:R:L77 R:R:N356 36.200113.73YesNo098
39R:R:N356 R:R:Y362 28.124112.79NoYes389
40R:R:L62 R:R:Y362 11.85194.69NoYes089
41R:R:M129 R:R:M80 20.99095.78NoYes479
42R:R:H128 R:R:M80 19.25445.25NoYes089
43R:R:H128 R:R:W163 14.95435.29NoYes089
44R:R:F344 R:R:T122 34.24249.08YesNo198
45R:R:D94 R:R:R97 30.64948.34NoNo076
46R:R:R97 R:R:W104 25.122712NoNo068
47R:R:F106 R:R:W104 11.914421.05YesNo078
48R:R:C111 R:R:W104 11.94327.84NoNo098
49L:L:?1 R:R:L115 14.55993.91YesNo005
50R:R:F344 R:R:W311 54.62725.01YesYes098
51R:R:F307 R:R:W311 50.74078.02NoYes098
52R:R:F307 R:R:L263 43.54024.87NoNo098
53R:R:L263 R:R:S133 39.11014.5NoNo589
54R:R:L266 R:R:S133 38.4566.01YesNo079
55R:R:L266 R:R:Y137 31.64514.07YesYes077
56R:R:I270 R:R:Y137 17.32083.63NoYes087
57R:R:F173 R:R:M248 16.72924.98NoNo056
58R:R:M248 R:R:P172 11.996210.06NoNo069
59R:R:E119 R:R:F173 13.323712.83YesNo065
60R:R:F256 R:R:H315 19.52389.05NoNo088
61R:R:H315 R:R:R318 13.7479.03NoYes187
62R:R:F256 R:R:L312 11.85197.31NoNo086
63R:R:G271 R:R:I270 13.55941.76NoNo068
64R:R:G271 R:R:V297 12.24633.68NoNo067
65L:L:?1 R:R:N337 27.10449.31YesNo006
66R:R:G317 R:R:N337 11.91445.09NoNo066
67R:R:N337 R:R:S333 13.86722.98NoNo067
68R:R:S333 R:R:T324 11.91443.2NoNo074
69R:R:T122 R:R:Y123 35.69994.99NoYes187
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D94 3.83 1 Yes No 0 7 0 1
L:L:?1 R:R:L115 3.91 1 Yes No 0 5 0 1
L:L:?1 R:R:E119 10.48 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L245 7.04 1 Yes No 0 4 0 1
L:L:?1 R:R:F314 6.88 1 Yes No 0 6 0 1
L:L:?1 R:R:R318 5.49 1 Yes Yes 0 7 0 1
L:L:?1 R:R:Y321 8.61 1 Yes No 0 5 0 1
L:L:?1 R:R:N337 9.31 1 Yes No 0 6 0 1
L:L:?1 R:R:L341 8.6 1 Yes No 0 6 0 1
L:L:?1 R:R:F344 5.5 1 Yes Yes 0 9 0 1
R:R:I87 R:R:T122 4.56 1 No No 7 8 2 2
R:R:F344 R:R:I87 6.28 1 Yes No 9 7 1 2
R:R:D94 R:R:R97 8.34 0 No No 7 6 1 2
R:R:D94 R:R:Y345 4.6 0 No Yes 7 8 1 2
R:R:F173 R:R:L115 6.09 0 No No 5 5 2 1
R:R:L115 R:R:V177 8.94 0 No No 5 6 1 2
R:R:E119 R:R:Y123 4.49 1 Yes Yes 6 7 1 2
R:R:E119 R:R:F173 12.83 1 Yes No 6 5 1 2
R:R:E119 R:R:R318 4.65 1 Yes Yes 6 7 1 1
R:R:T122 R:R:Y123 4.99 1 No Yes 8 7 2 2
R:R:F344 R:R:T122 9.08 1 Yes No 9 8 1 2
R:R:T252 R:R:Y123 8.74 1 No Yes 7 7 2 2
R:R:R318 R:R:Y123 5.14 1 Yes Yes 7 7 1 2
R:R:L245 R:R:L249 9.69 0 No No 4 5 1 2
R:R:R318 R:R:T252 7.76 1 Yes No 7 7 1 2
R:R:F344 R:R:W311 5.01 1 Yes Yes 9 8 1 2
R:R:F314 R:R:H315 12.44 1 No No 6 8 1 2
R:R:F314 R:R:R318 20.31 1 No Yes 6 7 1 1
R:R:H315 R:R:R318 9.03 1 No Yes 8 7 2 1
R:R:G317 R:R:N337 5.09 0 No No 6 6 2 1
R:R:L341 R:R:Y345 4.69 0 No Yes 6 8 1 2
R:R:F344 R:R:Y345 7.22 1 Yes Yes 9 8 1 2
R:R:L245 R:R:P237 3.28 0 No Yes 4 5 1 2
R:R:N337 R:R:S333 2.98 0 No No 6 7 1 2
R:R:G118 R:R:V117 1.84 0 No No 7 6 1 2
L:L:?1 R:R:G118 0.97 1 Yes No 0 7 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JMC_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.52
Number of Linked Nodes 261
Number of Links 277
Number of Hubs 25
Number of Links mediated by Hubs 107
Number of Communities 7
Number of Nodes involved in Communities 30
Number of Links involved in Communities 37
Path Summary
Number Of Nodes in MetaPath 70
Number Of Links MetaPath 69
Number of Shortest Paths 45625
Length Of Smallest Path 3
Average Path Length 14.3166
Length of Longest Path 31
Minimum Path Strength 1.29
Average Path Strength 6.77523
Maximum Path Strength 16.525
Minimum Path Correlation 0.7
Average Path Correlation 0.927547
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 47.9146
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 32.2666
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1L
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1L
Name[2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide
Synonyms
Identifier
FormulaC24 H31 N9 O3
Molecular Weight493.561
SMILES
PubChem44129754
Formal Charge0
Total Atoms67
Total Chiral Atoms1
Total Bonds68
Total Aromatic Bonds12

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtO43193
Sequence
>9JMC_nogp_Chain_R
CSPFPLGAL VPVTAVCLC LFVVGVSGN VVTVMLIGR YRDMRTTTN 
LYLGSMAVS DLLILLGLP FDLYRLWRS RPWVFGPLL CRLSLYVGE 
GCTYATLLH MTALSVERY LAICRPLRA RVLVTRRRV RALIAVLWA 
VALLSAGPF LFLVGVEQD AAALFSREC RPSPAQLGA LRVMLWVTT 
AYFFLPFLC LSILYGLIG RELWSSERG HRQTVRVLL VVVLAFIIC 
WLPFHVGRI IYINTEDSR MMYFSQYFN IVALQLFYL SASINPILY 
NLISKKYRA AAFKLLL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IBUAPeptideMotilinMotilinHomo sapiensErythromycin-A-chim(NtGi1-Gs-CtGq)/β1/γ23.512023-04-12doi.org/10.1126/sciadv.ade9020
8IBU (No Gprot) APeptideMotilinMotilinHomo sapiensErythromycin-A-3.512023-04-12doi.org/10.1126/sciadv.ade9020
8IBVAPeptideMotilinMotilinHomo sapiensMotilin-chim(NtGi1-Gs-CtGq)/β1/γ23.192023-04-12doi.org/10.1126/sciadv.ade9020
8IBV (No Gprot) APeptideMotilinMotilinHomo sapiensMotilin-3.192023-04-12doi.org/10.1126/sciadv.ade9020
9JMCAPeptideMotilinMotilinHomo sapiensDS-3801b-chim(Gs-CtGq)/β1/γ22.572025-05-28doi.org/10.1016/j.celrep.2025.115329
9JMC (No Gprot) APeptideMotilinMotilinHomo sapiensDS-3801b-2.572025-05-28doi.org/10.1016/j.celrep.2025.115329
9JMDAPeptideMotilinMotilinHomo sapiensAzithromycin-chim(Gs-CtGq)/β1/γ22.742025-05-28doi.org/10.1016/j.celrep.2025.115329
9JMD (No Gprot) APeptideMotilinMotilinHomo sapiensAzithromycin-2.742025-05-28doi.org/10.1016/j.celrep.2025.115329




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9JMC_nogp.zip



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