Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.32375810
2R:R:N56 7.705409
3R:R:Y76 5.96508
4R:R:I87 5.365417
5R:R:D94 6.0775417
6R:R:W104 8408
7R:R:Y116 5.136506
8R:R:Y123 8.94407
9R:R:Y137 8.575407
10R:R:W163 4.815409
11R:R:R233 8.28514
12R:R:E234 11.1125414
13R:R:R236 11.0175415
14R:R:P237 7.09405
15R:R:L266 6.2725407
16R:R:Y267 7.128508
17R:R:F314 6.686516
18R:R:R318 8.39417
19R:R:I322 7.388526
20R:R:F344 6.658519
21R:R:Y345 8.584518
22R:R:N351 7.038539
23R:R:Y355 5.932539
24R:R:Y362 7.19667649
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:L98 35.00595.32YesNo006
2R:R:I338 R:R:L98 33.98854.28NoNo066
3R:R:F33 R:R:I338 29.49266.28NoNo066
4R:R:F33 R:R:S31 23.89675.28NoNo067
5R:R:P32 R:R:S31 18.95813.56NoNo037
6R:R:P32 R:R:Q334 17.73264.74NoNo035
7R:R:L91 R:R:Y345 14.214512.89NoYes088
8L:L:?1 R:R:F314 59.97625.46YesYes106
9R:R:F314 R:R:R318 98.34179.62YesYes167
10R:R:E119 R:R:R318 55.16986.98NoYes067
11R:R:E119 R:R:Y123 56.613411.22NoYes067
12R:R:Y123 R:R:Y255 10016.88YesNo077
13R:R:L127 R:R:Y255 98.71175.86NoNo077
14R:R:L127 R:R:L162 97.39696.92NoNo078
15R:R:H128 R:R:L162 96.05585.14NoNo088
16R:R:H128 R:R:W163 95.37534.23NoYes089
17R:R:S79 R:R:W163 92.58724.94NoYes099
18R:R:I159 R:R:S79 91.87377.74NoNo089
19R:R:I159 R:R:Y76 91.15359.67NoYes088
20R:R:L132 R:R:Y76 68.54524.69NoYes088
21R:R:L132 R:R:Y355 67.64675.86NoYes089
22R:R:N351 R:R:Y355 30.71828.14YesYes399
23R:R:D84 R:R:N351 17.41876.73NoYes099
24R:R:R318 R:R:T252 48.6399.06YesNo077
25R:R:T252 R:R:Y123 48.57954.99NoYes077
26R:R:N351 R:R:P352 11.22494.89YesNo099
27R:R:L77 R:R:Y355 29.43314.69NoYes099
28R:R:L77 R:R:N356 28.273710.98NoNo098
29R:R:N356 R:R:Y362 25.95818.61NoYes489
30R:R:M69 R:R:Y362 11.59162.39NoYes089
31R:R:E135 R:R:Y76 10.99045.61NoYes088
32R:R:V155 R:R:Y76 14.67696.31NoYes078
33R:R:F314 R:R:F344 24.1514.29YesYes169
34L:L:?1 R:R:R97 16.00826.23YesNo106
35R:R:R97 R:R:W104 16.10739NoYes068
36L:L:?1 R:R:E234 17.894411.89YesYes104
37R:R:E234 R:R:R236 10.6611.63YesYes145
38R:R:A170 R:R:Y123 11.28442.67NoYes087
39R:R:F314 R:R:W311 43.72365.01YesNo068
40R:R:F307 R:R:W311 41.65579.02NoNo098
41R:R:F307 R:R:L263 38.50424.87NoNo098
42R:R:L263 R:R:Y267 34.29245.86NoYes088
43R:R:S133 R:R:Y267 29.89237.63NoYes098
44R:R:L266 R:R:S133 28.77586.01YesNo079
45R:R:L266 R:R:Y137 18.317312.89YesYes077
46R:R:I270 R:R:Y137 13.65953.63NoYes087
47R:R:T72 R:R:V150 17.14464.76NoNo076
48R:R:V148 R:R:V150 14.80583.21NoNo066
49R:R:L138 R:R:V148 12.4672.98NoNo056
50R:R:E119 R:R:F173 14.762813.99NoNo065
51R:R:F173 R:R:M248 14.135212.44NoNo056
52R:R:L249 R:R:M248 12.9364.24NoNo056
53R:R:V303 R:R:Y355 11.4763.79NoYes089
54R:R:M330 R:R:Q334 16.6168.16NoNo045
55R:R:M330 R:R:S333 14.13194.6NoNo047
56R:R:I320 R:R:S333 12.87993.1NoNo067
57R:R:F344 R:R:Y345 12.007812.38YesYes198
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D94 6.96 1 Yes Yes 0 7 0 1
L:L:?1 R:R:R97 6.23 1 Yes No 0 6 0 1
L:L:?1 R:R:L98 5.32 1 Yes No 0 6 0 1
L:L:?1 R:R:L115 7.1 1 Yes No 0 5 0 1
L:L:?1 R:R:E234 11.89 1 Yes Yes 0 4 0 1
L:L:?1 R:R:F314 5.46 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Y321 6.76 1 Yes No 0 5 0 1
L:L:?1 R:R:L341 8.87 1 Yes No 0 6 0 1
R:R:D94 R:R:R97 5.96 1 Yes No 7 6 1 1
R:R:D94 R:R:L341 6.79 1 Yes No 7 6 1 1
R:R:D94 R:R:Y345 4.6 1 Yes Yes 7 8 1 2
R:R:R97 R:R:W104 9 1 No Yes 6 8 1 2
R:R:I338 R:R:L98 4.28 0 No No 6 6 2 1
R:R:R102 R:R:R233 20.26 1 No Yes 6 4 2 2
R:R:E234 R:R:R102 16.28 1 Yes No 4 6 1 2
R:R:R102 R:R:R236 4.26 1 No Yes 6 5 2 2
R:R:L115 R:R:S114 4.5 0 No No 5 6 1 2
R:R:E234 R:R:R233 4.65 1 Yes Yes 4 4 1 2
R:R:R233 R:R:R236 10.66 1 Yes Yes 4 5 2 2
R:R:E234 R:R:R236 11.63 1 Yes Yes 4 5 1 2
R:R:F314 R:R:W311 5.01 1 Yes No 6 8 1 2
R:R:F314 R:R:H315 9.05 1 Yes No 6 8 1 2
R:R:F314 R:R:R318 9.62 1 Yes Yes 6 7 1 2
R:R:F314 R:R:F344 4.29 1 Yes Yes 6 9 1 2
R:R:H315 R:R:R318 7.9 1 No Yes 8 7 2 2
R:R:L341 R:R:Y345 8.21 1 No Yes 6 8 1 2
R:R:F344 R:R:Y345 12.38 1 Yes Yes 9 8 2 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9JMD_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 4.16
Number of Linked Nodes 263
Number of Links 278
Number of Hubs 24
Number of Links mediated by Hubs 98
Number of Communities 4
Number of Nodes involved in Communities 27
Number of Links involved in Communities 39
Path Summary
Number Of Nodes in MetaPath 58
Number Of Links MetaPath 57
Number of Shortest Paths 51229
Length Of Smallest Path 3
Average Path Length 17.3189
Length of Longest Path 37
Minimum Path Strength 1.43
Average Path Strength 6.95208
Maximum Path Strength 23.69
Minimum Path Correlation 0.7
Average Path Correlation 0.932041
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 49.0495
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 32.6929
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeZIT
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeZIT
NameAzithromycin
SynonymsAzithromycine
Identifier
FormulaC38 H72 N2 O12
Molecular Weight748.984
SMILES
PubChem447043
Formal Charge0
Total Atoms124
Total Chiral Atoms18
Total Bonds126
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtO43193
Sequence
>9JMD_nogp_Chain_R
SPFPLGALV PVTAVCLCL FVVGVSGNV VTVMLIGRY RDMRTTTNL 
YLGSMAVSD LLILLGLPF DLYRLWRSR PWVFGPLLC RLSLYVGEG 
CTYATLLHM TALSVERYL AICRPLRAR VLVTRRRVR ALIAVLWAV 
ALLSAGPFL FLVGVEQDP EAAALFSRE CRPSPAQLG ALRVMLWVT 
TAYFFLPFL CLSILYGLI GRELWSRGH RQTVRVLLV VVLAFIICW 
LPFHVGRII YINTEDSRM MYFSQYFNI VALQLFYLS ASINPILYN 
LISKKYRAA AFKLLL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8IBUAPeptideMotilinMotilinHomo sapiensErythromycin-A-chim(NtGi1-Gs-CtGq)/β1/γ23.512023-04-12doi.org/10.1126/sciadv.ade9020
8IBU (No Gprot) APeptideMotilinMotilinHomo sapiensErythromycin-A-3.512023-04-12doi.org/10.1126/sciadv.ade9020
8IBVAPeptideMotilinMotilinHomo sapiensMotilin-chim(NtGi1-Gs-CtGq)/β1/γ23.192023-04-12doi.org/10.1126/sciadv.ade9020
8IBV (No Gprot) APeptideMotilinMotilinHomo sapiensMotilin-3.192023-04-12doi.org/10.1126/sciadv.ade9020
9JMCAPeptideMotilinMotilinHomo sapiensDS-3801b-chim(Gs-CtGq)/β1/γ22.572025-05-28doi.org/10.1016/j.celrep.2025.115329
9JMC (No Gprot) APeptideMotilinMotilinHomo sapiensDS-3801b-2.572025-05-28doi.org/10.1016/j.celrep.2025.115329
9JMDAPeptideMotilinMotilinHomo sapiensAzithromycin-chim(Gs-CtGq)/β1/γ22.742025-05-28doi.org/10.1016/j.celrep.2025.115329
9JMD (No Gprot) APeptideMotilinMotilinHomo sapiensAzithromycin-2.742025-05-28doi.org/10.1016/j.celrep.2025.115329




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Download 9JMD_nogp.zip



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