Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F14 5.8825400
2R:R:I19 3.89667600
3R:R:F33 5.488520
4R:R:N44 7.45400
5R:R:P60 5.472510
6R:R:F64 3.826510
7R:R:T71 4.3125430
8R:R:M83 11.1525420
9R:R:F87 7.41420
10R:R:M103 3.365450
11R:R:F109 7.26630
12R:R:M112 3.762530
13R:R:R124 5.88400
14R:R:Y125 4.28400
15R:R:Y134 6.854510
16R:R:L138 7.1275410
17R:R:I143 3.3975410
18R:R:I176 3.575400
19R:R:H178 6.365420
20R:R:Y180 7.455620
21R:R:E182 7.4875420
22R:R:H183 9.065400
23R:R:Y200 3.488500
24R:R:D212 8400
25R:R:H246 5.622510
26R:R:Y254 5.1925400
27R:R:I270 3.9425400
28R:R:Y273 6.4825400
29R:R:N280 5.7625420
30R:R:Y282 5.745400
31R:R:L284 3.35420
32R:R:Y294 6.586510
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F14 R:R:I176 19.12193.77YesYes000
2R:R:I176 R:R:L16 18.75915.71YesNo000
3R:R:I176 R:R:P177 41.14663.39YesNo000
4R:R:P177 R:R:P20 43.56561.95NoNo000
5R:R:I19 R:R:P20 50.67733.39YesNo000
6R:R:I19 R:R:Y273 37.07064.84YesYes000
7R:R:F87 R:R:I19 92.18672.51YesYes000
8R:R:F87 R:R:S30 13.582510.57YesNo000
9R:R:C34 R:R:S30 10.86121.72NoNo000
10R:R:F33 R:R:F87 72.90765.36YesYes200
11R:R:F87 R:R:M83 29.729111.2YesYes200
12R:R:F33 R:R:L284 76.00393.65YesYes200
13R:R:I80 R:R:L284 94.12192.85NoYes000
14R:R:I80 R:R:Y37 94.049313.3NoNo000
15R:R:T77 R:R:Y37 94.10989.99NoNo000
16R:R:L73 R:R:T77 94.2552.95NoNo000
17R:R:L73 R:R:N44 94.52112.36NoYes000
18R:R:D72 R:R:N44 66.38859.42NoYes000
19R:R:D72 R:R:P287 50.94349.66NoNo000
20R:R:P286 R:R:P287 47.67785.84NoNo000
21R:R:P286 R:R:V285 23.06481.77NoNo000
22R:R:M36 R:R:V285 20.59754.56NoNo000
23R:R:M288 R:R:M36 18.1062.89NoNo000
24R:R:N44 R:R:P291 11.30874.89YesNo000
25R:R:A69 R:R:N44 1003.13NoYes000
26R:R:A69 R:R:L47 97.15774.73NoNo000
27R:R:L47 R:R:L65 92.02952.77NoNo000
28R:R:L65 R:R:Y294 90.614418.76NoYes000
29R:R:M61 R:R:Y294 21.51673.59NoYes000
30R:R:M120 R:R:Y294 26.13694.79NoYes100
31R:R:F64 R:R:M120 30.52733.73YesNo100
32R:R:F64 R:R:P60 12.07062.89YesYes100
33R:R:D123 R:R:Y134 14.21143.45NoYes000
34R:R:D123 R:R:M61 15.34.16NoNo000
35R:R:L283 R:R:L284 49.4924.15NoYes000
36R:R:L283 R:R:Y180 43.81958.21NoYes000
37R:R:I106 R:R:Y180 67.45283.63NoYes200
38R:R:I106 R:R:L75 68.61394.28NoNo000
39R:R:F109 R:R:L75 68.25118.53YesNo000
40R:R:F109 R:R:T71 55.73293.89YesYes300
41R:R:M83 R:R:T179 29.789515.05YesNo200
42R:R:H178 R:R:T179 32.93424.11YesNo200
43R:R:H178 R:R:Y180 18.00929.8YesYes200
44R:R:E113 R:R:T71 57.43832.82NoYes000
45R:R:D72 R:R:E113 57.29325.2NoNo000
46R:R:H183 R:R:M103 14.75573.94YesYes000
47R:R:H107 R:R:H183 60.98213.58NoYes000
48R:R:E182 R:R:H107 63.57046.15YesNo000
49R:R:E182 R:R:H178 16.63044.92YesYes200
50R:R:F109 R:R:S108 11.74412.64YesNo300
51R:R:F253 R:R:P286 37.63912.89NoNo000
52R:R:F253 R:R:Y254 36.62316.19NoYes000
53R:R:D212 R:R:Y254 33.79296.9YesYes000
54R:R:D212 R:R:S114 19.92025.89YesNo000
55R:R:I208 R:R:S114 12.6276.19NoNo000
56R:R:D212 R:R:L118 10.147612.21YesNo000
57R:R:H246 R:R:Y294 41.70293.27YesYes100
58R:R:I223 R:R:Y125 25.02426.04NoYes000
59R:R:I128 R:R:I223 27.503611.77NoNo000
60R:R:I128 R:R:R124 32.607610.02NoYes000
61R:R:C243 R:R:R124 34.27674.18NoYes000
62R:R:C243 R:R:Y220 36.18776.72NoNo000
63R:R:H246 R:R:Y220 38.12298.71YesNo000
64R:R:C129 R:R:Y125 16.89656.72NoYes000
65R:R:C129 R:R:Y130 11.3572.69NoNo000
66R:R:F161 R:R:H183 39.707314.71NoYes000
67R:R:F161 R:R:V204 34.38562.62NoNo000
68R:R:V204 R:R:Y200 31.43448.83NoYes000
69R:R:L157 R:R:Y200 12.85681.17NoYes000
70R:R:H246 R:R:I250 20.10166.63YesNo000
71R:R:I216 R:R:I250 18.57764.42NoNo000
72R:R:D212 R:R:I216 19.26717YesNo000
73R:R:I292 R:R:L289 10.48625.71NoNo000
74R:R:I292 R:R:M288 13.05032.92NoNo000
75R:R:L283 R:R:Y282 16.50942.34NoYes000
76R:R:P271 R:R:Y273 29.523511.13NoYes000
77R:R:I270 R:R:P271 26.95943.39YesNo000
78R:R:H275 R:R:I270 16.46116.63NoYes000
79R:R:G267 R:R:H275 13.76391.59NoNo000
80R:R:G267 R:R:T263 11.05471.82NoNo000
81R:R:E182 R:R:Y180 56.62813.47YesYes200
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8J46
Class O1
SubFamily Odorant receptors
Type Odorant family 52
SubType OR52C
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.66
Date 2023-12-20
D.O.I. 10.1038/s41467-023-43983-9
Net Summary
Imin 2.62
Number of Linked Nodes 233
Number of Links 243
Number of Hubs 32
Number of Links mediated by Hubs 117
Number of Communities 6
Number of Nodes involved in Communities 38
Number of Links involved in Communities 49
Path Summary
Number Of Nodes in MetaPath 82
Number Of Links MetaPath 81
Number of Shortest Paths 23681
Length Of Smallest Path 3
Average Path Length 14.1824
Length of Longest Path 32
Minimum Path Strength 1.19
Average Path Strength 5.85371
Maximum Path Strength 13.375
Minimum Path Correlation 0.7
Average Path Correlation 0.911349
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 41.0929
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.8775
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Cytochromes
SCOP2Family Identifier• Cytochromes
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProt-
Sequence
>8J46_Chain_R
PSSFLLVIP GLESVHIWI SIPFCAMYL IALLGNSTL LFVIKLHEP 
MYYFLAMLA ATDLVLSTS TIPKMLAIF WFNLKEISF DACLTQMFF 
IHSFTGMES GVLLAMAFD RYVAICYPL RYTTILTNK VIGKIGMAV 
VLRAVLLVI PFPFLLKRL NIIPHTYCE HMGVAKLIK VNIIYGLFV 
ALLIVGLDV ILIALSYVL ILRALKALS TCGSHICVI LAFYTPAFF 
SFLTHRFGH HIPPYIHIL LANLYLLVP PMLNPIIY


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8W77O1Odorant receptorsOdorant family 52OR52CHomo sapiens---3.612023-12-2010.1038/s41467-023-43983-9
8J46O1Odorant receptorsOdorant family 52OR52CHomo sapiens---3.662023-12-2010.1038/s41467-023-43983-9
8HTIO1Odorant receptorsOdorant family 52OR52CHomo sapiensOcatnoic acid-Gs/β1/γ22.972023-12-2010.1038/s41467-023-43983-9
8HTI (No Gprot) O1Odorant receptorsOdorant family 52OR52CHomo sapiensOcatnoic acid-2.972023-12-2010.1038/s41467-023-43983-9




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8J46.zip



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