Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L16 3.915440
2R:R:I19 4.08400
3R:R:P20 2.166500
4R:R:F33 4.3925420
5R:R:N44 7.45400
6R:R:P60 4.82667610
7R:R:F64 4.316510
8R:R:L73 6.3075400
9R:R:T79 3.4075420
10R:R:I80 5.658500
11R:R:F96 4.8075400
12R:R:Q102 3.6875420
13R:R:M103 3.365420
14R:R:I106 4.49420
15R:R:F109 5.39167650
16R:R:M112 4.0825450
17R:R:M120 3.958510
18R:R:D123 7.816510
19R:R:R124 6.786510
20R:R:Y125 3.6775400
21R:R:Y134 5.20167610
22R:R:L138 4.176510
23R:R:I143 2.838510
24R:R:I159 3.27400
25R:R:F161 6.89460
26R:R:I176 3.93400
27R:R:H178 5.75420
28R:R:T179 6.9420
29R:R:Y180 6.576520
30R:R:C181 4.2475420
31R:R:H183 5.474500
32R:R:N197 3.8525400
33R:R:Y200 5.955460
34R:R:Y220 5.286500
35R:R:H246 6.69167610
36R:R:V249 2.5400
37R:R:F253 6.3775400
38R:R:Y254 3.884510
39R:R:P271 3.5725430
40R:R:I274 7.63430
41R:R:N280 6.115420
42R:R:Y282 9.51430
43R:R:L284 3.4175420
44R:R:V285 2.6925400
45R:R:Y294 5.79167610
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F14 R:R:I176 10.05923.77NoYes000
2R:R:I176 R:R:P177 24.73583.39YesNo000
3R:R:P177 R:R:P20 26.41541.95NoYes000
4R:R:P20 R:R:V17 13.77181.77YesNo000
5R:R:I175 R:R:V17 12.06293.07NoNo000
6R:R:I175 R:R:N174 10.35041.42NoNo000
7R:R:I176 R:R:L16 11.72965.71YesYes000
8R:R:I19 R:R:P20 36.7313.39YesYes000
9R:R:I19 R:R:L22 32.03294.28YesNo000
10R:R:L22 R:R:Y273 30.36433.52NoNo000
11R:R:I276 R:R:P20 79.24981.69NoYes000
12R:R:H178 R:R:I276 80.58876.63YesNo000
13R:R:H178 R:R:T179 20.42054.11YesYes200
14R:R:N280 R:R:T179 19.73735.85YesYes200
15R:R:L284 R:R:N280 20.21542.75YesYes200
16R:R:I80 R:R:L284 42.30825.71YesYes000
17R:R:H178 R:R:Y180 59.50699.8YesYes200
18R:R:L283 R:R:Y180 20.44628.21NoYes000
19R:R:L283 R:R:L284 20.67152.77NoYes000
20R:R:Q102 R:R:Y180 20.77223.38YesYes200
21R:R:Q102 R:R:T79 32.18672.83YesYes200
22R:R:I80 R:R:T79 59.17173.04YesYes000
23R:R:I106 R:R:Y180 22.17343.63YesYes200
24R:R:I106 R:R:T79 26.74694.56YesYes200
25R:R:I80 R:R:Y37 10013.3YesNo000
26R:R:T77 R:R:Y37 99.84256.24NoNo000
27R:R:L73 R:R:T77 99.68132.95YesNo000
28R:R:L73 R:R:N44 99.175812.36YesYes000
29R:R:D72 R:R:N44 97.25269.42NoYes000
30R:R:D72 R:R:P287 97.04019.66NoNo000
31R:R:P286 R:R:P287 96.60425.84NoNo000
32R:R:F253 R:R:P286 94.20482.89YesNo000
33R:R:F253 R:R:L117 40.8852.44YesNo000
34R:R:L117 R:R:V249 40.48942.98NoYes000
35R:R:V249 R:R:Y294 38.76222.52YesYes000
36R:R:M120 R:R:Y294 28.56753.59YesYes100
37R:R:F64 R:R:M120 57.06724.98YesYes100
38R:R:F64 R:R:P60 18.84722.89YesYes100
39R:R:F253 R:R:Y254 52.71726.19YesYes000
40R:R:I250 R:R:Y254 39.17252.42NoYes100
41R:R:H246 R:R:I250 38.85566.63YesNo100
42R:R:H246 R:R:M120 30.63543.94YesYes100
43R:R:D123 R:R:M61 16.29219.7YesNo000
44R:R:M61 R:R:R124 17.26478.69NoYes000
45R:R:D123 R:R:F64 15.62727.17YesYes100
46R:R:D123 R:R:Y134 17.332510.34YesYes100
47R:R:D123 R:R:L138 12.09225.43YesYes100
48R:R:F64 R:R:I143 20.6333.77YesYes100
49R:R:I143 R:R:Y63 12.84692.42YesNo000
50R:R:M67 R:R:Y63 11.584916.76NoNo000
51R:R:C181 R:R:Q102 12.77543.05YesYes200
52R:R:C181 R:R:M103 10.96763.24YesYes200
53R:R:H183 R:R:M103 10.7683.94YesYes000
54R:R:V126 R:R:Y134 14.84882.52NoYes100
55R:R:L138 R:R:V126 19.44062.98YesNo100
56R:R:I137 R:R:V126 26.00333.07NoNo000
57R:R:I137 R:R:R133 17.33982.51NoNo000
58R:R:G147 R:R:M67 10.32471.75NoNo000
59R:R:I274 R:R:Y273 20.165916.92YesNo300
60R:R:I274 R:R:L278 13.4332.85YesNo300
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8W77
Class A
SubFamily Olfactory receptors
Type Olfactory
SubType OR52C
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.61
Date 2023-12-20
D.O.I. 10.1038/s41467-023-43983-9
Net Summary
Imin 2.42
Number of Linked Nodes 238
Number of Links 267
Number of Hubs 45
Number of Links mediated by Hubs 158
Number of Communities 6
Number of Nodes involved in Communities 47
Number of Links involved in Communities 67
Path Summary
Number Of Nodes in MetaPath 61
Number Of Links MetaPath 60
Number of Shortest Paths 73268
Length Of Smallest Path 3
Average Path Length 20.7699
Length of Longest Path 38
Minimum Path Strength 1.385
Average Path Strength 5.51338
Maximum Path Strength 19.235
Minimum Path Correlation 0.7
Average Path Correlation 0.910065
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 28.2963
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 52.6566
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• binding   • organic cyclic compound binding   • tetrapyrrole binding   • heme binding   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding
Gene OntologyBiological Process• cellular metabolic process   • electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy
Gene OntologyCellular Component• periplasmic space   • cellular anatomical entity
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProt-
Sequence
>8W77_Chain_R
PSSFLLVIP GLESVHIWI SIPFCAMYL IALLGNSTL LFVIKLHEP 
MYYFLAMLA ATDLVLSTS TIPKMLAIF WFNLKEISF DACLTQMFF 
IHSFTGMES GVLLAMAFD RYVAICYPL RYTTILTNK VIGKIGMAV 
VLRAVLLVI PFPFLLKRL NIIPHTYCE HMGVAKLIK VNIIYGLFV 
ALLIVGLDV ILIALSYVL ILRALKALS TCGSHICVI LAFYTPAFF 
SFLTHRFGH HIPPYIHIL LANLYLLVP PMLNPIIY


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8HTIAOlfactory receptorsOlfactoryOR52CHomo sapiensOcatnoic Acid-Gs/&β;1/&γ;22.972023-12-2010.1038/s41467-023-43983-9
8J46AOlfactory receptorsOlfactoryOR52CHomo sapiens---3.662023-12-2010.1038/s41467-023-43983-9
8W77AOlfactory receptorsOlfactoryOR52CHomo sapiens---3.612023-12-2010.1038/s41467-023-43983-9




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8W77.zip



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