Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:C11 4.2925417
2R:R:M17 5.32417
3R:R:L47 4.325426
4R:R:I53 3.58409
5R:R:V56 2.895437
6R:R:M61 6.655436
7R:R:W69 4.98607
8R:R:H72 5.805409
9R:R:L73 3.01409
10R:R:S76 4.0225468
11R:R:L78 3.575428
12R:R:L84 4.222518
13R:R:G100 1.725408
14R:R:F103 6.14406
15R:R:K105 3.7325407
16R:R:F111 5.428516
17R:R:F112 5.64429715
18R:R:N114 4.4375408
19R:R:M115 6.07518
20R:R:F116 3.68833617
21R:R:W156 5.68469
22R:R:Y166 10.188514
23R:R:R170 9.466515
24R:R:D171 4.8025405
25R:R:Y183 7.272514
26R:R:Y184 11.394514
27R:R:L206 7.4675415
28R:R:K210 6.43333615
29R:R:F211 7.72416
30R:R:F215 5.6775419
31R:R:I221 3.7725407
32R:R:R240 5.6475
33R:R:F244 4.296577
34R:R:W259 11.1025408
35R:R:Y262 7.0225417
36R:R:H263 5.87167618
37R:R:H273 7.34511
38R:R:R279 3.25501
39R:R:W283 5.3275404
40R:R:F294 8.415416
41R:R:P301 4.0575429
42R:R:Y304 4.35659
43R:R:M311 5.5525408
44W:W:?1 9.02889940
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:H273 R:R:I13 12.33225.3YesNo117
2R:R:I13 R:R:Y183 12.682713.3NoYes174
3R:R:M17 R:R:W283 17.80035.82YesYes074
4R:R:R279 R:R:W283 10.28873YesYes014
5R:R:Y183 R:R:Y184 44.45172.98YesYes144
6R:R:Y166 R:R:Y184 40.66479.93YesYes144
7R:R:F112 R:R:Y166 20.179413.41YesYes154
8R:R:F111 R:R:F112 28.81674.29YesYes165
9R:R:F111 R:R:L84 26.38112.44YesYes168
10R:R:L84 R:R:S83 33.55413YesNo086
11R:R:I110 R:R:S83 32.40179.29NoNo056
12R:R:I110 R:R:N114 32.30075.66NoYes058
13R:R:A80 R:R:N114 53.30286.25NoYes078
14R:R:A80 R:R:S297 52.53061.71NoNo079
15R:R:D77 R:R:S297 51.752411.78NoNo099
16R:R:R170 R:R:Y184 20.235815.43YesYes154
17R:R:C182 R:R:R170 12.10355.57NoYes195
18R:R:C182 R:R:H107 14.034110.32NoNo095
19R:R:H107 R:R:L84 15.51923.86NoYes058
20R:R:D77 R:R:P301 42.44096.44NoYes299
21R:R:I53 R:R:P301 38.49353.39YesYes099
22R:R:I53 R:R:V52 19.00913.07YesNo096
23R:R:A74 R:R:I53 16.06573.25NoYes099
24R:R:A74 R:R:L54 15.07964.73NoNo097
25R:R:L54 R:R:L71 14.11432.77NoNo076
26R:R:L315 R:R:V52 18.05281.49NoNo056
27R:R:L315 R:R:V56 17.16761.49NoYes057
28R:R:K314 R:R:V56 10.34514.55NoYes347
29R:R:L71 R:R:V57 12.20747.45NoNo067
30R:R:M311 R:R:M61 16.36274.33YesYes086
31R:R:K210 R:R:Y166 32.95127.17YesYes154
32R:R:F116 R:R:K210 49.92282.48YesYes175
33R:R:F116 R:R:F120 80.95523.22YesNo076
34R:R:F120 R:R:L155 79.57119.74NoNo067
35R:R:L155 R:R:V151 79.27112.98NoNo075
36R:R:V151 R:R:W69 30.04933.68NoYes057
37R:R:V151 W:W:?1 1002.6NoYes050
38R:R:F112 R:R:T163 16.24692.59YesNo057
39R:R:H72 R:R:W156 23.85353.17YesYes099
40R:R:F112 R:R:M115 19.48142.49YesYes158
41R:R:C152 R:R:W69 22.12195.22NoYes077
42R:R:C152 R:R:H72 22.062514.74NoYes079
43R:R:S76 R:R:W156 23.36054.94YesYes689
44R:R:C104 R:R:R170 24.98815.57NoYes195
45R:R:C104 R:R:T172 26.330610.14NoNo096
46R:R:G100 R:R:T172 22.34471.82YesNo086
47R:R:F103 R:R:G100 14.30141.51YesYes068
48R:R:K105 R:R:R170 10.84124.95YesYes075
49R:R:R170 R:R:S108 25.706915.81YesNo055
50R:R:H263 R:R:K210 10.46699.17YesYes185
51R:R:S123 W:W:?1 46.37342.62NoYes070
52R:R:I221 R:R:S123 42.17654.64YesNo077
53R:R:L127 W:W:?1 42.91917.24NoYes060
54R:R:I221 R:R:L127 41.90034.28YesNo076
55R:R:I221 R:R:S224 79.98993.1YesNo074
56R:R:S224 R:R:S225 77.79791.63NoNo048
57R:R:S126 R:R:S225 71.18633.26NoNo098
58R:R:I222 R:R:S126 68.97059.29NoNo089
59R:R:H226 R:R:I222 66.74885.3NoNo098
60R:R:H226 R:R:V248 64.515316.61NoNo097
61R:R:F244 R:R:V248 60.18776.55YesNo077
62R:R:F244 R:R:V229 25.61483.93YesNo078
63R:R:V133 R:R:V229 14.060812.83NoNo088
64R:R:R232 R:R:V133 11.82132.62NoNo058
65R:R:F169 R:R:L206 12.19562.44NoYes055
66R:R:F215 R:R:H263 16.21723.39YesYes198
67R:R:F215 R:R:G260 14.80046.02YesNo095
68R:R:F244 R:R:R240 18.67354.28YesYes775
69R:R:L233 R:R:R238 14.11434.86NoNo083
70R:R:F244 R:R:P241 11.71441.44YesNo776
71R:R:G260 R:R:P261 12.97084.06NoNo059
72R:R:P261 R:R:V289 11.13523.53NoNo097
73R:R:M17 R:R:Y183 22.28238.38YesYes174
74R:R:F112 R:R:S108 26.96036.61YesNo055
75R:R:N114 R:R:S76 27.15344.47YesYes088
76R:R:F116 R:R:M115 18.13294.98YesYes178
77R:R:F116 R:R:T163 14.81532.59YesNo077
78R:R:F112 R:R:K210 14.25094.96YesYes155
79R:R:L206 R:R:Y166 11.545114.07YesYes154
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:V151 R:R:W69 3.68 0 No Yes 5 7 1 2
R:R:P218 R:R:S123 3.56 0 No No 9 7 2 1
R:R:I221 R:R:S123 4.64 0 Yes No 7 7 2 1
R:R:S123 W:W:?1 2.62 0 No Yes 7 0 1 0
R:R:I221 R:R:L127 4.28 0 Yes No 7 6 2 1
R:R:L127 W:W:?1 7.24 0 No Yes 6 0 1 0
R:R:D128 R:R:Q132 10.44 4 No No 8 7 1 2
R:R:D128 R:R:R143 7.15 4 No No 8 7 1 2
R:R:D128 W:W:?1 7.1 4 No Yes 8 0 1 0
R:R:Q132 R:R:R143 11.68 4 No No 7 7 2 2
R:R:H142 R:R:W138 21.16 4 No No 4 4 1 1
R:R:W138 W:W:?1 9.93 4 No Yes 4 0 1 0
R:R:H142 R:R:N141 6.38 4 No No 4 5 1 2
R:R:H142 W:W:?1 32.51 4 No Yes 4 0 1 0
R:R:A147 W:W:?1 8.24 0 No Yes 3 0 1 0
R:R:K150 W:W:?1 8.61 0 No Yes 2 0 1 0
R:R:L155 R:R:V151 2.98 0 No No 7 5 2 1
R:R:V151 W:W:?1 2.6 0 No Yes 5 0 1 0
R:R:L131 W:W:?1 2.41 0 No Yes 6 0 1 0
R:R:A147 R:R:T144 1.68 0 No No 3 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XXU_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.44
Number of Linked Nodes 283
Number of Links 324
Number of Hubs 44
Number of Links mediated by Hubs 165
Number of Communities 7
Number of Nodes involved in Communities 54
Number of Links involved in Communities 72
Path Summary
Number Of Nodes in MetaPath 80
Number Of Links MetaPath 79
Number of Shortest Paths 69700
Length Of Smallest Path 3
Average Path Length 16.1698
Length of Longest Path 37
Minimum Path Strength 1.07
Average Path Strength 5.73372
Maximum Path Strength 20.56
Minimum Path Correlation 0.7
Average Path Correlation 0.939013
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 48.2504
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.0957
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• chemotaxis   • response to stimulus   • taxis   • response to chemical   • response to external stimulus   • locomotion   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • signaling   • biological regulation   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • neuropeptide signaling pathway   • positive regulation of cell communication   • regulation of signaling   • positive regulation of signal transduction   • positive regulation of biological process   • regulation of signal transduction   • positive regulation of G protein-coupled receptor signaling pathway   • positive regulation of response to stimulus   • regulation of response to stimulus   • regulation of cell communication   • regulation of G protein-coupled receptor signaling pathway   • positive regulation of cellular process   • positive regulation of signaling   • immune response   • immune system process   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • multicellular organismal process   • negative regulation of male germ cell proliferation   • sexual reproduction   • regulation of reproductive process   • reproductive process   • regulation of male germ cell proliferation   • negative regulation of biological process   • gamete generation   • germ cell proliferation   • regulation of germ cell proliferation   • negative regulation of cellular process   • regulation of multicellular organismal process   • negative regulation of cell population proliferation   • cell population proliferation   • multicellular organismal reproductive process   • male germ cell proliferation   • negative regulation of reproductive process   • regulation of cell population proliferation   • negative regulation of multicellular organismal process   • negative regulation of germ cell proliferation   • intracellular signal transduction   • calcium-mediated signaling   • intracellular signaling cassette   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • cell projection   • neuron projection   • plasma membrane bounded cell projection   • D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • response to hormone   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle   • nuclear lumen   • cell cortex   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • cytosol   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • organelle membrane   • lysosome   • Golgi apparatus   • endomembrane system   • cilium   • ciliary basal body   • enzyme binding   • GTPase binding   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • synapse   • cell junction   • G-protein beta-subunit binding   • fibroblast proliferation
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• G protein-coupled receptor-like   • Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeA1D
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1D
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9Y5Y4
Sequence
>8XXU_nogp_Chain_R
LCPILEQMS RLQSHSNTS IRYIDHAAV LLHGLASLL GLVENGVIL 
FVVGCRMRQ TVVTTWVLH LALSDLLAS ASLPFFTYF LAVGHSWEL 
GTTFCKLHS SIFFLNMFA SGFLLSAIS LDRCLQVVR PVWAQNHRT 
VAAAHKVCL VLWALAVLN TVPYFVFRD TISDGRIMC YYNVLLLNP 
GPDRDATCN SRQVALAVS KFLLAFLVP LAIIASSHA AVSLRLQHR 
GRRRPGRFV RLVAAVVAA FALCWGPYH VFSLLEARA HANPGLRPL 
VWRGLPFVT SLAFFNSVA NPVLYVLTC PDMLRKLRR SLRTVLESV 
L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9IYBALipidProstanoidDP2Homo sapiensProstaglandinA1D5QGi1/β1/γ22.822024-12-0410.1073/pnas.2403304121
9IYB (No Gprot) ALipidProstanoidDP2Homo sapiensProstaglandinA1D5Q2.822024-12-0410.1073/pnas.2403304121
8XXVALipidProstanoidDP2Homo sapiensIndomethacinA1D5QGi1/β1/γ22.332024-12-04doi.org/10.1073/pnas.2403304121
8XXV (No Gprot) ALipidProstanoidDP2Homo sapiensIndomethacinA1D5Q2.332024-12-04doi.org/10.1073/pnas.2403304121
8XXUALipidProstanoidDP2Homo sapiens-A1D5QGi1/β1/γ22.542024-12-04doi.org/10.1073/pnas.2403304121
8XXU (No Gprot) ALipidProstanoidDP2Homo sapiens-A1D5Q2.542024-12-04doi.org/10.1073/pnas.2403304121
7M8WALipidProstanoidDP2Homo sapiens15r-Methyl-Prostaglandin D2Na-2.612021-08-2510.1073/pnas.2102813118
6D27ALipidProstanoidDP2Homo sapiensCAY10471--2.742018-10-0310.1016/j.molcel.2018.08.009
6D26ALipidProstanoidDP2Homo sapiensFevipiprant--2.82018-10-0310.1016/j.molcel.2018.08.009




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Download 8XXU_nogp.zip



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