Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:C11 4.2925417
2R:R:M17 5.32417
3R:R:L47 4.325426
4R:R:I53 3.58409
5R:R:V56 2.895437
6R:R:M61 6.655436
7R:R:W69 4.98607
8R:R:H72 5.805409
9R:R:L73 3.01409
10R:R:S76 4.0225468
11R:R:L78 3.575428
12R:R:L84 4.222518
13R:R:G100 1.725408
14R:R:F103 6.14406
15R:R:K105 3.7325407
16R:R:F111 5.428516
17R:R:F112 5.64429715
18R:R:N114 4.4375408
19R:R:M115 6.07518
20R:R:F116 3.68833617
21R:R:W156 5.68469
22R:R:Y166 10.188514
23R:R:R170 9.466515
24R:R:D171 4.8025405
25R:R:Y183 7.272514
26R:R:Y184 11.394514
27R:R:L206 7.4675415
28R:R:K210 6.43333615
29R:R:F211 7.72416
30R:R:F215 5.6775419
31R:R:I221 3.7725407
32R:R:R240 5.6475
33R:R:F244 4.296577
34R:R:W259 11.1025408
35R:R:Y262 7.0225417
36R:R:H263 5.87167618
37R:R:H273 7.34511
38R:R:R279 3.25501
39R:R:W283 5.3275404
40R:R:F294 8.415416
41R:R:P301 4.0575429
42R:R:Y304 4.35659
43R:R:M311 5.5525408
44W:W:?1 9.30143740
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:H273 R:R:I13 18.47475.3YesNo117
2R:R:I13 R:R:Y183 18.874313.3NoYes174
3R:R:M17 R:R:W283 26.68345.82YesYes074
4R:R:R279 R:R:W283 15.44573YesYes014
5R:R:Y183 R:R:Y184 65.67512.98YesYes144
6R:R:Y166 R:R:Y184 55.24159.93YesYes144
7R:R:F112 R:R:Y166 33.515913.41YesYes154
8R:R:F111 R:R:F112 39.95864.29YesYes165
9R:R:F111 R:R:F294 10.1087.5YesYes166
10R:R:F294 R:R:H39 10.157412.44YesNo068
11R:R:F111 R:R:L84 38.38982.44YesYes168
12R:R:L84 R:R:S83 55.33523YesNo086
13R:R:I110 R:R:S83 55.01459.29NoNo056
14R:R:I110 R:R:N114 54.48185.66NoYes058
15R:R:A80 R:R:N114 78.16596.25NoYes078
16R:R:A80 R:R:S297 77.06581.71NoNo079
17R:R:D77 R:R:S297 75.955811.78NoNo099
18R:R:D77 R:R:N50 12.515413.46NoNo299
19R:R:L78 R:R:N50 12.93978.24YesNo289
20R:R:R170 R:R:Y184 29.796315.43YesYes154
21R:R:C182 R:R:R170 19.45145.57NoYes195
22R:R:C182 R:R:H107 23.309210.32NoNo095
23R:R:H107 R:R:L84 25.32193.86NoYes058
24R:R:D77 R:R:P301 62.31566.44NoYes299
25R:R:I53 R:R:P301 56.85463.39YesYes099
26R:R:I53 R:R:V52 28.13383.07YesNo096
27R:R:A74 R:R:I53 23.77293.25NoYes099
28R:R:A74 R:R:L54 22.31764.73NoNo097
29R:R:L54 R:R:L71 20.89682.77NoNo076
30R:R:L315 R:R:V52 26.72781.49NoNo056
31R:R:L315 R:R:V56 25.42061.49NoYes057
32R:R:K314 R:R:V56 15.36684.55NoYes347
33R:R:K314 R:R:M61 13.99048.64NoYes346
34R:R:L71 R:R:V57 18.09487.45NoNo067
35R:R:M61 R:R:V57 13.66989.13YesNo367
36R:R:M311 R:R:M61 24.27614.33YesYes086
37R:R:K210 R:R:Y166 39.16437.17YesYes154
38R:R:F116 R:R:K210 52.01522.48YesYes175
39R:R:F116 R:R:F120 76.26663.22YesNo076
40R:R:F120 R:R:L155 73.60279.74NoNo067
41R:R:L155 R:R:V151 72.92192.98NoNo075
42R:R:V151 R:R:W69 72.28063.68NoYes057
43R:R:V65 R:R:W69 1003.68NoYes057
44R:R:R143 R:R:V65 98.529910.46NoNo075
45R:R:F112 R:R:T163 20.19142.59YesNo057
46R:R:T163 R:R:V160 11.86423.17NoNo074
47R:R:L113 R:R:V160 11.48444.47NoNo054
48R:R:L113 R:R:W156 11.17366.83NoYes059
49R:R:H72 R:R:W156 29.0763.17YesYes099
50R:R:F112 R:R:M115 25.56362.49YesYes158
51R:R:M115 R:R:W259 11.775412.8YesYes088
52R:R:F255 R:R:L122 14.22232.44NoNo099
53R:R:L122 R:R:Y304 13.86715.86NoYes099
54R:R:I125 R:R:Y304 10.8483.63NoYes589
55R:R:I125 R:R:W69 10.89738.22NoYes087
56R:R:C152 R:R:W69 25.08515.22NoYes077
57R:R:C152 R:R:H72 25.188714.74NoYes079
58R:R:S76 R:R:W156 28.53834.94YesYes689
59R:R:C104 R:R:R170 31.28115.57NoYes195
60R:R:C104 R:R:T172 34.24110.14NoNo096
61R:R:G100 R:R:T172 29.0811.82YesNo086
62R:R:F103 R:R:G100 18.64241.51YesYes068
63R:R:F103 R:R:L91 10.70998.53YesNo065
64R:R:K105 R:R:R170 14.35554.95YesYes075
65R:R:R170 R:R:S108 31.315715.81YesNo055
66R:R:H263 R:R:K210 12.38729.17YesYes185
67R:R:D128 R:R:R143 93.71027.15NoNo487
68R:R:D128 W:W:?1 92.75326.08NoYes480
69R:R:L127 W:W:?1 77.37166.2NoYes060
70R:R:I221 R:R:L127 75.77334.28YesNo076
71R:R:I221 R:R:S224 64.43693.1YesNo074
72R:R:S224 R:R:S225 62.75961.63NoNo048
73R:R:S126 R:R:S225 57.66863.26NoNo098
74R:R:I222 R:R:S126 55.95199.29NoNo089
75R:R:H226 R:R:I222 54.22525.3NoNo098
76R:R:H226 R:R:V248 52.478916.61NoNo097
77R:R:F244 R:R:V248 49.09976.55YesNo077
78R:R:F244 R:R:V229 21.12873.93YesNo078
79R:R:V133 R:R:V229 11.755712.83NoNo088
80R:R:F169 R:R:L206 17.88272.44NoYes055
81R:R:F169 R:R:V186 13.906622.28NoNo055
82R:R:R202 R:R:V186 12.559811.77NoNo035
83R:R:F211 R:R:H263 10.37449.05YesYes168
84R:R:F215 R:R:H263 14.68113.39YesYes198
85R:R:F215 R:R:G260 15.82066.02YesNo095
86R:R:F244 R:R:R240 15.30764.28YesYes775
87R:R:L233 R:R:R238 11.6624.86NoNo083
88R:R:C308 R:R:M311 12.11094.86NoYes088
89R:R:G260 R:R:P261 13.8774.06NoNo059
90R:R:P261 R:R:V289 11.92343.53NoNo097
91R:R:M17 R:R:Y183 33.23478.38YesYes174
92R:R:F112 R:R:S108 32.84996.61YesNo055
93R:R:N114 R:R:S76 35.02054.47YesYes088
94R:R:F116 R:R:M115 16.34854.98YesYes178
95R:R:F116 R:R:T163 17.17722.59YesNo077
96R:R:F112 R:R:K210 16.87634.96YesYes155
97R:R:F111 R:R:Y262 11.849410.32YesYes167
98R:R:L206 R:R:Y166 16.254714.07YesYes154
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:I221 R:R:L127 4.28 0 Yes No 7 6 2 1
R:R:L127 W:W:?1 6.2 0 No Yes 6 0 1 0
R:R:D128 R:R:Q132 10.44 4 No No 8 7 1 2
R:R:D128 R:R:R143 7.15 4 No No 8 7 1 2
R:R:D128 W:W:?1 6.08 4 No Yes 8 0 1 0
R:R:Q132 R:R:R143 11.68 4 No No 7 7 2 2
R:R:H142 R:R:W138 21.16 4 No No 4 4 1 1
R:R:W138 W:W:?1 8.5 4 No Yes 4 0 1 0
R:R:H142 R:R:N141 6.38 4 No No 4 5 1 2
R:R:H142 W:W:?1 27.83 4 No Yes 4 0 1 0
R:R:A147 W:W:?1 7.06 0 No Yes 3 0 1 0
R:R:K150 W:W:?1 7.37 0 No Yes 2 0 1 0
R:R:L131 W:W:?1 2.07 0 No Yes 6 0 1 0
R:R:A147 R:R:T144 1.68 0 No No 3 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8XXU_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.44
Number of Linked Nodes 283
Number of Links 322
Number of Hubs 44
Number of Links mediated by Hubs 163
Number of Communities 7
Number of Nodes involved in Communities 54
Number of Links involved in Communities 72
Path Summary
Number Of Nodes in MetaPath 99
Number Of Links MetaPath 98
Number of Shortest Paths 54786
Length Of Smallest Path 3
Average Path Length 16.1123
Length of Longest Path 39
Minimum Path Strength 1.07
Average Path Strength 5.95482
Maximum Path Strength 17.6
Minimum Path Correlation 0.7
Average Path Correlation 0.938664
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.22581
Average % Of Corr. Nodes 51.0369
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.6698
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_W_
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
Code_W_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9Y5Y4
Sequence
>8XXU_nogp_Chain_R
LCPILEQMS RLQSHSNTS IRYIDHAAV LLHGLASLL GLVENGVIL 
FVVGCRMRQ TVVTTWVLH LALSDLLAS ASLPFFTYF LAVGHSWEL 
GTTFCKLHS SIFFLNMFA SGFLLSAIS LDRCLQVVR PVWAQNHRT 
VAAAHKVCL VLWALAVLN TVPYFVFRD TISDGRIMC YYNVLLLNP 
GPDRDATCN SRQVALAVS KFLLAFLVP LAIIASSHA AVSLRLQHR 
GRRRPGRFV RLVAAVVAA FALCWGPYH VFSLLEARA HANPGLRPL 
VWRGLPFVT SLAFFNSVA NPVLYVLTC PDMLRKLRR SLRTVLESV 
L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6D26ALipidProstanoidDP2Homo sapiensFevipiprant--2.82018-10-03doi.org/10.1016/j.molcel.2018.08.009
6D27ALipidProstanoidDP2Homo sapiensCAY10471--2.742018-10-03doi.org/10.1016/j.molcel.2018.08.009
7M8WALipidProstanoidDP2Homo sapiens15r-Methyl-PGD2Na-2.612021-08-25doi.org/10.1073/pnas.2102813118
9IYBALipidProstanoidDP2Homo sapiensPGD2A1D5QGi1/β1/γ22.822024-12-04doi.org/10.1073/pnas.2403304121
9IYB (No Gprot) ALipidProstanoidDP2Homo sapiensPGD2A1D5Q2.822024-12-04doi.org/10.1073/pnas.2403304121
8XXUALipidProstanoidDP2Homo sapiens-A1D5QGi1/β1/γ22.542024-12-04doi.org/10.1073/pnas.2403304121
8XXU (No Gprot) ALipidProstanoidDP2Homo sapiens-A1D5Q2.542024-12-04doi.org/10.1073/pnas.2403304121
8XXVALipidProstanoidDP2Homo sapiensIndomethacinA1D5QGi1/β1/γ22.332024-12-04doi.org/10.1073/pnas.2403304121
8XXV (No Gprot) ALipidProstanoidDP2Homo sapiensIndomethacinA1D5Q2.332024-12-04doi.org/10.1073/pnas.2403304121




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8XXU_nogp.zip



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