Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 11.00821110
2R:R:S43 4.8025407
3R:R:L47 2.5875406
4R:R:I53 4.7325409
5R:R:V56 3.0125407
6R:R:W69 5.77667627
7R:R:L71 4.835406
8R:R:L73 4.865439
9R:R:D77 6.865439
10R:R:L91 6.63405
11R:R:W97 10.46519
12R:R:F103 8.7875416
13R:R:H107 7.2425415
14R:R:F111 9.025416
15R:R:F112 6.79415
16R:R:M115 6.965448
17R:R:F116 5.348547
18R:R:D128 6.0375428
19R:R:R170 7.684515
20R:R:R179 10.94401
21R:R:M181 10.1425414
22R:R:Y183 10.415414
23R:R:R202 4.7625403
24R:R:K210 5.72505
25R:R:F211 7.4675456
26R:R:F215 5.7525409
27R:R:R240 5.9525465
28R:R:F244 5.63567
29R:R:W259 8.3325408
30R:R:Y262 5.4525407
31R:R:R279 5.372501
32R:R:N300 7.8375439
33R:R:L303 3.045408
34R:R:Y304 7.57429
35W:W:?1 9.774551120
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:M181 14.206520.46YesYes104
2L:L:?1 R:R:Y184 19.607617.73YesNo104
3R:R:Q203 R:R:Y184 20.088415.78NoNo034
4R:R:E269 R:R:Q203 15.95076.37NoNo053
5R:R:E269 R:R:I13 12.22014.1NoNo057
6L:L:?1 R:R:Y183 10.75674.63YesYes104
7R:R:M17 R:R:Y183 10.8768.38NoYes074
8L:L:?1 R:R:F90 12.578125.63YesNo005
9L:L:?1 R:R:F111 10.1326.41YesYes106
10R:R:F111 R:R:F294 28.767511.79YesNo066
11R:R:F294 R:R:L84 36.807719.49NoNo068
12R:R:L84 R:R:S43 28.32889.01NoYes087
13R:R:L47 R:R:S43 21.89583YesYes067
14R:R:L47 R:R:S81 15.39973YesNo066
15R:R:G46 R:R:S81 13.22033.71NoNo086
16R:R:G46 R:R:V298 11.03391.84NoNo088
17L:L:?1 R:R:F112 50.5377.21YesYes105
18R:R:F112 R:R:K210 71.82564.96YesYes055
19R:R:H263 R:R:K210 1005.24NoYes085
20R:R:H263 R:R:M115 87.81855.25NoYes088
21R:R:M115 R:R:W259 55.253712.8YesYes088
22R:R:N296 R:R:W259 50.89499.04NoYes098
23R:R:N296 R:R:N300 49.638512.26NoYes099
24R:R:D77 R:R:N300 41.82286.73YesYes399
25R:R:D77 R:R:N50 40.39110.77YesNo099
26R:R:A74 R:R:N50 39.45394.69NoNo099
27R:R:A74 R:R:I53 38.49933.25NoYes099
28R:R:I53 R:R:V57 23.55233.07YesNo097
29R:R:M61 R:R:V57 16.01044.56NoNo067
30R:R:K314 R:R:M61 14.901411.52NoNo046
31R:R:K314 R:R:R60 13.88363.71NoNo045
32R:R:R60 R:R:S318 11.637510.54NoNo054
33R:R:F116 R:R:M115 36.90254.98YesYes478
34R:R:F116 R:R:F120 30.86264.29YesNo076
35R:R:F120 R:R:L155 29.98534.87NoNo067
36R:R:L155 W:W:?1 29.20977.01NoYes070
37R:R:W69 W:W:?1 15.09446.59YesYes270
38R:R:L122 R:R:N300 17.90554.12NoYes099
39R:R:L122 R:R:Y304 17.02118.21NoYes099
40R:R:I53 R:R:V305 13.82759.22YesNo097
41R:R:V305 R:R:V70 11.64818.02NoNo078
42L:L:?1 R:R:H107 15.041810.15YesYes105
43R:R:H107 R:R:S83 10.24439.76YesNo056
44R:R:F111 R:R:Y262 13.8388.25YesYes067
45R:R:F215 R:R:H263 42.87929.05YesNo098
46R:R:F215 R:R:L219 32.4563.65YesNo095
47R:R:F255 R:R:L219 30.46966.09NoNo095
48R:R:F255 R:R:I222 29.45185.02NoNo098
49R:R:H226 R:R:I222 20.08843.98NoNo098
50R:R:H226 R:R:V248 19.077713.84NoNo097
51R:R:F244 R:R:V248 16.9795.24YesNo077
52R:R:K210 R:R:Y166 10.73565.97YesNo054
53R:R:T290 R:R:Y262 11.53934.99NoYes067
54R:R:F294 R:R:T290 10.95325.19NoNo066
55R:R:F111 R:R:F112 11.79559.65YesYes165
56R:R:F112 R:R:R170 11.41295.34YesYes155
57R:R:K210 R:R:Y262 25.05794.78YesYes057
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:F87 12.02 1 Yes No 0 6 0 1
L:L:?1 R:R:F90 25.63 1 Yes No 0 5 0 1
L:L:?1 R:R:H107 10.15 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F111 6.41 1 Yes Yes 0 6 0 1
L:L:?1 R:R:F112 7.21 1 Yes Yes 0 5 0 1
L:L:?1 R:R:R170 7.99 1 Yes Yes 0 5 0 1
L:L:?1 R:R:M181 20.46 1 Yes Yes 0 4 0 1
L:L:?1 R:R:C182 5.22 1 Yes No 0 9 0 1
L:L:?1 R:R:Y183 4.63 1 Yes Yes 0 4 0 1
L:L:?1 R:R:Y184 17.73 1 Yes No 0 4 0 1
R:R:M17 R:R:Y183 8.38 0 No Yes 7 4 2 1
R:R:H107 R:R:S83 9.76 1 Yes No 5 6 1 2
R:R:F103 R:R:F86 16.08 1 Yes No 6 7 2 2
R:R:F86 R:R:H107 4.53 1 No Yes 7 5 2 1
R:R:F87 R:R:L91 12.18 0 No Yes 6 5 1 2
R:R:F90 R:R:L91 3.65 0 No Yes 5 5 1 2
R:R:F90 R:R:W97 9.02 0 No Yes 5 9 1 2
R:R:F103 R:R:W97 6.01 1 Yes Yes 6 9 2 2
R:R:C104 R:R:W97 3.92 0 No Yes 9 9 2 2
R:R:F103 R:R:H107 4.53 1 Yes Yes 6 5 2 1
R:R:C104 R:R:R170 5.57 0 No Yes 9 5 2 1
R:R:C104 R:R:C182 7.28 0 No No 9 9 2 1
R:R:K105 R:R:R170 3.71 0 No Yes 7 5 2 1
R:R:R170 R:R:S108 15.81 1 Yes No 5 5 1 2
R:R:F111 R:R:F112 9.65 1 Yes Yes 6 5 1 1
R:R:F111 R:R:Y262 8.25 1 Yes Yes 6 7 1 2
R:R:F111 R:R:F294 11.79 1 Yes No 6 6 1 2
R:R:F112 R:R:R170 5.34 1 Yes Yes 5 5 1 1
R:R:F112 R:R:K210 4.96 1 Yes Yes 5 5 1 2
R:R:I173 R:R:M181 4.37 1 No Yes 3 4 2 1
R:R:M181 R:R:R179 4.96 1 Yes Yes 4 1 1 2
R:R:M181 R:R:Y183 10.78 1 Yes Yes 4 4 1 1
R:R:Y183 R:R:Y184 17.87 1 Yes No 4 4 1 1
R:R:Q203 R:R:Y184 15.78 0 No No 3 4 2 1
R:R:K210 R:R:Y262 4.78 0 Yes Yes 5 7 2 2
L:L:?1 R:R:L286 3.64 1 Yes No 0 5 0 1
R:R:L286 R:R:P287 3.28 0 No No 5 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:V65 R:R:W69 4.9 0 No Yes 5 7 2 1
R:R:R143 R:R:V65 10.46 2 No No 7 5 2 2
R:R:A124 R:R:W69 5.19 0 No Yes 7 7 2 1
R:R:I125 R:R:W69 5.87 2 No Yes 8 7 2 1
R:R:D128 R:R:W69 5.58 2 Yes Yes 8 7 1 1
R:R:C152 R:R:W69 6.53 0 No Yes 7 7 2 1
R:R:W69 W:W:?1 6.59 2 Yes Yes 7 0 1 0
R:R:F120 R:R:L155 4.87 0 No No 6 7 2 1
R:R:I221 R:R:S123 4.64 0 No No 7 7 2 1
R:R:S123 W:W:?1 5.43 0 No Yes 7 0 1 0
R:R:I221 R:R:L127 4.28 0 No No 7 6 2 1
R:R:L127 W:W:?1 8.01 0 No Yes 6 0 1 0
R:R:D128 R:R:Q132 3.92 2 Yes No 8 7 1 2
R:R:D128 R:R:R143 10.72 2 Yes No 8 7 1 2
R:R:D128 W:W:?1 3.93 2 Yes Yes 8 0 1 0
R:R:L131 R:R:W138 4.56 0 No No 6 4 2 1
R:R:Q132 R:R:R143 11.68 2 No No 7 7 2 2
R:R:H142 R:R:W138 20.1 2 No No 4 4 1 1
R:R:W138 W:W:?1 10.71 2 No Yes 4 0 1 0
R:R:H142 W:W:?1 26.05 2 No Yes 4 0 1 0
R:R:A147 W:W:?1 6.84 0 No Yes 3 0 1 0
R:R:K150 W:W:?1 8.16 0 No Yes 2 0 1 0
R:R:V151 W:W:?1 18.32 0 No Yes 5 0 1 0
R:R:V154 W:W:?1 6.47 0 No Yes 3 0 1 0
R:R:L155 W:W:?1 7.01 0 No Yes 7 0 1 0
R:R:H142 R:R:N141 2.55 2 No No 4 5 1 2
R:R:A147 R:R:T144 1.68 0 No No 3 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9IYB_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.65
Number of Linked Nodes 281
Number of Links 306
Number of Hubs 35
Number of Links mediated by Hubs 136
Number of Communities 6
Number of Nodes involved in Communities 39
Number of Links involved in Communities 49
Path Summary
Number Of Nodes in MetaPath 58
Number Of Links MetaPath 57
Number of Shortest Paths 50783
Length Of Smallest Path 3
Average Path Length 13.4163
Length of Longest Path 30
Minimum Path Strength 1.255
Average Path Strength 7.16828
Maximum Path Strength 23.045
Minimum Path Correlation 0.7
Average Path Correlation 0.933006
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 56.2532
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.2748
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePG2
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePG2
NameProstaglandin D2
Synonyms(5E,13E)-9,15-DIHYDROXY-11-OXOPROSTA-5,13-DIEN-1-OIC ACID
Identifier
FormulaC20 H32 O5
Molecular Weight352.465
SMILES
PubChem448457
Formal Charge0
Total Atoms57
Total Chiral Atoms4
Total Bonds57
Total Aromatic Bonds0

CodeA1D
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1D
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9Y5Y4
Sequence
>9IYB_nogp_Chain_R
LCPILEQMS RLQSIDHAA VLLHGLASL LGLVENGVI LFVVGCRMR 
QTVVTTWVL HLALSDLLA SASLPFFTY FLAVGHSWE LGTTFCKLH 
SSIFFLNMF ASGFLLSAI SLDRCLQVV RPVWAQNHR TVAAAHKVC 
LVLWALAVL NTVPYFVFR DTISRLDGR IMCYYNVLL LNPRDATCN 
SRQVALAVS KFLLAFLVP LAIIASSHA AVSLRLQHR GRRRPGRFV 
RLVAAVVAA FALCWGPYH VFSLLEARA HANPGLRPL VWRGLPFVT 
SLAFFNSVA NPVLYVLTC PDMLRKLRR SLRTV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7M8WALipidProstanoidDP2Homo sapiens15r-Methyl-Prostaglandin D2Na-2.612021-08-25doi.org/10.1073/pnas.2102813118
9IYBALipidProstanoidDP2Homo sapiensProstaglandinA1D5QGi1/β1/γ22.822024-12-04doi.org/10.1073/pnas.2403304121
9IYB (No Gprot) ALipidProstanoidDP2Homo sapiensProstaglandinA1D5Q2.822024-12-04doi.org/10.1073/pnas.2403304121
8XXUALipidProstanoidDP2Homo sapiens-A1D5QGi1/β1/γ22.542024-12-04doi.org/10.1073/pnas.2403304121
8XXU (No Gprot) ALipidProstanoidDP2Homo sapiens-A1D5Q2.542024-12-04doi.org/10.1073/pnas.2403304121
8XXVALipidProstanoidDP2Homo sapiensIndomethacinA1D5QGi1/β1/γ22.332024-12-04doi.org/10.1073/pnas.2403304121
8XXV (No Gprot) ALipidProstanoidDP2Homo sapiensIndomethacinA1D5Q2.332024-12-04doi.org/10.1073/pnas.2403304121
6D26ALipidProstanoidDP2Homo sapiensFevipiprant--2.82018-10-03doi.org/10.1016/j.molcel.2018.08.009
6D27ALipidProstanoidDP2Homo sapiensCAY10471--2.742018-10-03doi.org/10.1016/j.molcel.2018.08.009




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Download 9IYB_nogp.zip



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