Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 12.4467610
2R:R:T37 3.8725404
3R:R:N48 3.97529
4R:R:P63 5.545437
5R:R:Y67 6.64667608
6R:R:F78 8.1675406
7R:R:K82 6.725404
8R:R:F107 9.775413
9R:R:S108 3.74454
10R:R:Y110 9.296518
11R:R:S115 4.425407
12R:R:E123 11.3825439
13R:R:W133 6.2925437
14R:R:Y134 10.636537
15R:R:R138 11.186539
16R:R:W151 4.7875459
17R:R:S154 4.51458
18R:R:V161 3.43413
19R:R:Y179 7.148515
20R:R:F183 8.9725406
21R:R:L197 3.6275448
22R:R:W200 7.9446
23R:R:F224 10.234549
24R:R:P230 5.1225419
25R:R:G234 4.0225413
26R:R:L235 7.2325413
27R:R:R239 7.73286713
28R:R:P266 3.22429
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F78 49.346413.96YesYes006
2R:R:F78 R:R:K82 93.909311.17YesYes064
3R:R:F86 R:R:K82 62.75156.2NoYes044
4R:R:F86 R:R:T37 58.61692.59NoYes044
5R:R:L33 R:R:T37 22.87011.47NoYes054
6R:R:I253 R:R:L33 17.86419.99NoNo045
7R:R:L256 R:R:T37 30.32358.84NoYes054
8R:R:F78 R:R:L79 74.46933.65YesNo068
9R:R:D75 R:R:L79 72.27229.5NoNo298
10R:R:D75 R:R:N48 72.76358.08NoYes299
11R:R:N48 R:R:P266 23.12973.26YesYes299
12R:R:G44 R:R:P266 12.36672.03NoYes099
13R:R:L256 R:R:V40 10.5594.47NoNo057
14R:R:F76 R:R:N48 12.11642.42NoYes069
15R:R:G47 R:R:P266 24.27924.06NoYes089
16R:R:G47 R:R:T50 19.56993.64NoNo085
17R:R:N48 R:R:V51 46.73222.96YesNo299
18R:R:V51 R:R:Y269 60.99945.05NoNo099
19R:R:L71 R:R:Y269 60.072312.89NoNo099
20R:R:L116 R:R:L71 62.38995.54NoNo079
21R:R:L116 R:R:Y67 1004.69NoYes078
22R:R:S143 R:R:Y67 13.76665.09NoYes098
23R:R:P63 R:R:S143 11.16163.56YesNo079
24R:R:N62 R:R:P63 10.51271.63NoYes087
25L:L:?1 R:R:Y110 46.667328.22YesYes108
26R:R:L235 R:R:Y110 41.38314.69YesYes138
27R:R:F183 R:R:L235 71.836515.83YesYes063
28R:R:F183 R:R:L111 61.20333.65YesNo065
29R:R:L111 R:R:S154 58.77454.5NoYes058
30R:R:S154 R:R:W151 56.34564.94YesYes589
31R:R:N70 R:R:W151 59.2387.91NoYes099
32R:R:L116 R:R:N70 58.7938.24NoNo079
33R:R:E123 R:R:Y67 58.598315.71YesYes098
34R:R:E123 R:R:Y134 26.207512.35YesYes397
35R:R:E123 R:R:R138 29.479910.47YesYes399
36R:R:V120 R:R:Y67 41.1055.05NoYes098
37R:R:F224 R:R:V120 39.35296.55YesNo099
38R:R:F78 R:R:T106 39.5943.89YesNo064
39R:R:T106 R:R:Y110 39.51056.24NoYes048
40R:R:I102 R:R:K82 27.24585.82NoYes044
41R:R:I102 R:R:L98 22.75892.85NoNo044
42R:R:L98 R:R:V84 15.4262.98NoNo045
43R:R:L88 R:R:V84 13.15472.98NoNo035
44R:R:Y110 R:R:Y179 48.032.98YesYes185
45R:R:F107 R:R:Y179 26.32811.35YesYes135
46R:R:F107 R:R:V161 21.75775.24YesYes133
47R:R:V161 R:R:V165 39.69591.6YesNo031
48R:R:R103 R:R:V165 34.74553.92NoNo031
49R:R:F162 R:R:R103 25.08585.34NoNo043
50R:R:F162 R:R:V100 15.11082.62NoNo043
51R:R:V100 R:R:V97 10.09553.21NoNo031
52R:R:R239 R:R:Y179 45.50857.2YesYes135
53R:R:R239 R:R:V161 21.91533.92YesYes133
54R:R:L111 R:R:S115 11.76423NoYes057
55R:R:G112 R:R:S154 11.88473.71NoYes078
56R:R:F183 R:R:L114 15.490913.4YesNo068
57R:R:W133 R:R:Y134 25.92016.75YesYes377
58R:R:L126 R:R:W133 33.80923.42NoYes067
59R:R:L126 R:R:V122 18.93952.98NoNo066
60R:R:S193 R:R:V122 15.23134.85NoNo086
61R:R:R138 R:R:W133 26.049911YesYes397
62R:R:F224 R:R:R124 21.4618.55YesNo499
63R:R:L197 R:R:R124 19.86653.64YesNo489
64R:R:F130 R:R:L126 11.4492.44NoNo056
65R:R:R137 R:R:W133 15.23134NoYes067
66R:R:I132 R:R:R137 11.4493.76NoNo076
67R:R:F224 R:R:L227 11.82912.44YesNo096
68L:L:?1 R:R:P230 10.5593.76YesYes109
69R:R:L240 R:R:R239 10.33651.21NoYes033
70R:R:I253 R:R:L250 12.8215.71NoNo043
71R:R:F247 R:R:L250 10.30879.74NoNo023
72R:R:L256 R:R:L260 17.99391.38NoNo055
73R:R:L257 R:R:L260 10.4571.38NoNo075
74R:R:P266 R:R:V51 14.82343.53YesNo299
75R:R:L235 R:R:Y179 32.01087.03YesYes135
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:F78 13.96 1 Yes Yes 0 6 0 1
L:L:?1 R:R:S109 5.16 1 Yes No 0 6 0 1
L:L:?1 R:R:Y110 28.22 1 Yes Yes 0 8 0 1
L:L:?1 R:R:P230 3.76 1 Yes Yes 0 9 0 1
L:L:?1 R:R:G234 7.84 1 Yes Yes 0 3 0 1
L:L:?1 R:R:N261 15.74 1 Yes No 0 9 0 1
R:R:F78 R:R:L79 3.65 0 Yes No 6 8 1 2
R:R:F78 R:R:K82 11.17 0 Yes Yes 6 4 1 2
R:R:F78 R:R:T106 3.89 0 Yes No 6 4 1 2
R:R:T106 R:R:Y110 6.24 0 No Yes 4 8 2 1
R:R:Y110 R:R:Y179 2.98 1 Yes Yes 8 5 1 2
R:R:G234 R:R:Y110 4.35 1 Yes Yes 3 8 1 1
R:R:L235 R:R:Y110 4.69 1 Yes Yes 3 8 2 1
R:R:L235 R:R:Y179 7.03 1 Yes Yes 3 5 2 2
R:R:L229 R:R:P230 4.93 0 No Yes 5 9 2 1
R:R:N261 R:R:P230 9.77 1 No Yes 9 9 1 1
R:R:G228 R:R:P230 2.03 0 No Yes 7 9 2 1
R:R:A233 R:R:G234 1.95 0 No Yes 6 3 2 1
R:R:A237 R:R:G234 1.95 0 No Yes 5 3 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8YFS_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.95
Number of Linked Nodes 212
Number of Links 228
Number of Hubs 28
Number of Links mediated by Hubs 97
Number of Communities 6
Number of Nodes involved in Communities 36
Number of Links involved in Communities 47
Path Summary
Number Of Nodes in MetaPath 76
Number Of Links MetaPath 75
Number of Shortest Paths 28057
Length Of Smallest Path 3
Average Path Length 12.6423
Length of Longest Path 26
Minimum Path Strength 1.265
Average Path Strength 6.50192
Maximum Path Strength 21.98
Minimum Path Correlation 0.7
Average Path Correlation 0.91592
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.7619
Average % Of Corr. Nodes 45.0728
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.0403
Maximum Path Hubs % 100

Details about the values in these tables can be found in the corresponding documentation page .
CodeA1D
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeA1D
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtA0A9L0JPP9
Sequence
>8YFS_nogp_Chain_R
LFLAVLSLC GLVGNGTVI WLLGRIKRN PFSVYILNL AGADFAFLF 
CKSVRFLLL NRSVAVLNV LIRGVTFSS YLGGLSLLM AVSVERCLS 
VLFPIWYRC RRAQLSAIA CALIWGLSL CGILVFLCV HFVDFCDVV 
NLVYGMFFL TFLVLCASS LLIVQCFRI VLLTVLAFL VLGLPLGAG 
LLDRLSPSL PFDILLPIL HLLSALNSG VNPLIYFFM GRTTVLVLM 
LNALWAC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8YFSAOrphanOrphanMRGPREEquus quaggaA1D6H-chim(NtGi1-Gs-CtGq)/β1/γ22.82025-03-05To be published
8YFS (No Gprot) AOrphanOrphanMRGPREEquus quaggaA1D6H-2.82025-03-05To be published
9USTAOrphanOrphanMRGPREEquus quaggaA1D6H-chim(NtGi1-Gs-CtGq)/β1/γ23.022025-07-02To be published
9UST (No Gprot) AOrphanOrphanMRGPREEquus quaggaA1D6H-3.022025-07-02To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8YFS_nogp.zip



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