Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 4.711310
2R:R:Y17 9.115424
3R:R:Y20 5.415405
4R:R:L46 3.5375406
5R:R:Y55 3.5925407
6R:R:F66 4.955407
7R:R:Y76 6.338525
8R:R:F77 5.922524
9R:R:W82 5.13428
10R:R:F84 4.738527
11R:R:Y97 5.955405
12R:R:L107 3.884538
13R:R:F115 4.948508
14R:R:R128 5.88407
15R:R:W141 3.38409
16R:R:S156 4.846544
17R:R:E170 6.5925424
18R:R:F172 4.5825415
19R:R:W177 10.45411
20R:R:F193 8.99408
21R:R:V207 2.9475408
22R:R:H234 7.6125407
23R:R:V243 3.3325406
24R:R:Y245 5.535407
25R:R:Y252 5.8575414
26R:R:R256 7.816513
27R:R:V269 3.3175405
28R:R:Y273 6.31415
29R:R:P274 4.41405
30R:R:D287 5.3825439
31R:R:Y292 4.7875407
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y252 21.87325.87YesYes104
2R:R:V269 R:R:Y252 25.72232.52YesYes054
3R:R:V255 R:R:V269 20.51424.81NoYes035
4L:L:?1 R:R:Y273 34.52294.19YesYes105
5R:R:P274 R:R:Y273 37.03674.17YesYes055
6R:R:P274 R:R:Y20 27.73245.56YesYes055
7R:R:F77 R:R:Y20 21.868510.32YesYes045
8L:L:?1 R:R:Y97 18.085910.07YesYes005
9R:R:F96 R:R:Y97 15.05428.25NoYes065
10L:L:?1 R:R:S148 99.72443.22YesNo007
11R:R:S148 R:R:T98 99.92873.2NoNo075
12R:R:T98 R:R:V144 99.9623.17NoNo057
13R:R:V144 R:R:W141 1002.45NoYes079
14R:R:F106 R:R:W141 99.98575.01NoYes089
15R:R:F106 R:R:N58 99.8869.67NoNo089
16R:R:C137 R:R:N58 99.52966.3NoNo079
17R:R:C137 R:R:Y55 99.32052.69NoYes077
18R:R:I110 R:R:Y55 91.90743.63NoYes097
19R:R:I110 R:R:Y291 80.64533.63NoNo099
20R:R:L107 R:R:Y291 74.39184.69YesNo089
21R:R:L107 R:R:S103 33.13533YesNo389
22R:R:D63 R:R:S103 32.42732.94NoNo099
23R:R:D63 R:R:N35 64.13234.04NoNo099
24R:R:N35 R:R:P288 62.19828.15NoNo099
25R:R:P288 R:R:S34 28.1031.78NoNo097
26R:R:L30 R:R:S34 25.99793NoNo057
27R:R:G31 R:R:L30 21.75921.71NoNo085
28R:R:G31 R:R:V67 17.48241.84NoNo085
29R:R:F28 R:R:V67 15.32982.62NoNo075
30R:R:D287 R:R:L107 34.10472.71YesYes398
31R:R:D287 R:R:D63 33.64383.99YesNo099
32R:R:F28 R:R:L32 10.9963.65NoNo076
33R:R:P288 R:R:Y292 34.12375.56NoYes097
34R:R:F42 R:R:Y292 23.64093.09NoYes077
35R:R:F42 R:R:L46 17.48242.44NoYes076
36R:R:A133 R:R:Y55 33.21612.67NoYes087
37R:R:A133 R:R:E51 32.08043.02NoNo087
38R:R:F77 R:R:Y76 14.91165.16YesYes245
39L:L:?1 R:R:F172 22.99943.49YesYes105
40R:R:F169 R:R:F172 20.53797.5NoYes045
41R:R:F169 R:R:S156 20.86582.64NoYes044
42R:R:C168 R:R:S156 13.28173.44NoYes094
43R:R:C168 R:R:C89 12.267.28NoNo099
44R:R:C89 R:R:W82 11.28593.92NoYes098
45R:R:F84 R:R:W82 18.16678.02YesYes278
46R:R:W82 R:R:Y76 13.42432.89YesYes285
47L:L:?1 R:R:Y101 21.63093.36YesNo107
48R:R:N246 R:R:Y101 20.97995.81NoNo087
49R:R:F238 R:R:L107 10.02664.87NoYes398
50R:R:F193 R:R:N246 15.961819.33YesNo088
51R:R:E51 R:R:R128 30.90673.49NoYes077
52R:R:A117 R:R:R128 26.45886.91NoYes087
53R:R:A117 R:R:I118 25.38021.62NoNo088
54R:R:I118 R:R:V207 24.16376.14NoYes088
55R:R:F115 R:R:V207 12.09852.62YesYes088
56R:R:F260 R:R:V255 11.67081.31NoNo033
57R:R:H234 R:R:Y291 15.334513.07YesNo079
58R:R:I110 R:R:R114 11.5335.01NoNo099
59R:R:H234 R:R:R114 10.76797.9YesNo079
60R:R:H234 R:R:V290 19.545.54YesNo077
61R:R:I237 R:R:V290 15.35834.61NoNo077
62R:R:C241 R:R:I237 11.01981.64NoNo087
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y97 10.07 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y101 3.36 1 Yes No 0 7 0 1
L:L:?1 R:R:S148 3.22 1 Yes No 0 7 0 1
L:L:?1 R:R:F172 3.49 1 Yes Yes 0 5 0 1
L:L:?1 R:R:W177 11.41 1 Yes Yes 0 1 0 1
L:L:?1 R:R:I188 5.11 1 Yes No 0 5 0 1
L:L:?1 R:R:Y252 5.87 1 Yes Yes 0 4 0 1
L:L:?1 R:R:R256 6.95 1 Yes Yes 0 3 0 1
L:L:?1 R:R:Y273 4.19 1 Yes Yes 0 5 0 1
R:R:V93 R:R:Y97 2.52 0 No Yes 6 5 2 1
R:R:F169 R:R:V93 11.8 0 No No 4 6 2 2
R:R:M94 R:R:S148 7.67 0 No No 6 7 2 1
R:R:F96 R:R:Y97 8.25 0 No Yes 6 5 2 1
R:R:Y245 R:R:Y97 2.98 0 Yes Yes 7 5 2 1
R:R:S148 R:R:T98 3.2 0 No No 7 5 1 2
R:R:I188 R:R:Y101 7.25 1 No No 5 7 1 1
R:R:N246 R:R:Y101 5.81 0 No No 8 7 2 1
R:R:F169 R:R:F172 7.5 0 No Yes 4 5 2 1
R:R:F172 R:R:P173 4.33 1 Yes No 5 4 1 2
R:R:F172 R:R:W177 3.01 1 Yes Yes 5 1 1 1
R:R:E174 R:R:R256 3.49 0 No Yes 1 3 2 1
R:R:L181 R:R:W177 11.39 0 No Yes 4 1 2 1
R:R:R256 R:R:W177 15.99 1 Yes Yes 3 1 1 1
R:R:I184 R:R:I188 2.94 0 No No 5 5 2 1
R:R:S253 R:R:V185 3.23 0 No No 5 5 2 1
R:R:F187 R:R:V191 7.87 0 No No 3 4 2 1
R:R:Y245 R:R:Y273 5.96 0 Yes Yes 7 5 2 1
R:R:R256 R:R:Y252 4.12 1 Yes Yes 3 4 1 1
R:R:V269 R:R:Y252 2.52 0 Yes Yes 5 4 2 1
R:R:Y252 R:R:Y273 10.92 1 Yes Yes 4 5 1 1
R:R:R256 R:R:R270 8.53 1 Yes No 3 4 1 2
R:R:P274 R:R:Y273 4.17 0 Yes Yes 5 5 2 1
L:L:?1 R:R:A151 2.25 1 Yes No 0 4 0 1
L:L:?1 R:R:V185 2.13 1 Yes No 0 5 0 1
L:L:?1 R:R:V191 2.13 1 Yes No 0 4 0 1
L:L:?1 R:R:T143 1.05 1 Yes No 0 4 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9ITE_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.45
Number of Linked Nodes 258
Number of Links 275
Number of Hubs 31
Number of Links mediated by Hubs 114
Number of Communities 4
Number of Nodes involved in Communities 27
Number of Links involved in Communities 37
Path Summary
Number Of Nodes in MetaPath 63
Number Of Links MetaPath 62
Number of Shortest Paths 38625
Length Of Smallest Path 3
Average Path Length 16.1356
Length of Longest Path 34
Minimum Path Strength 1.29
Average Path Strength 4.62873
Maximum Path Strength 15.72
Minimum Path Correlation 0.7
Average Path Correlation 0.929325
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 46.8797
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.2134
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNKP
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeNKP
Name(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate
Synonyms18:1 LPA; oleoyl lysophosphatidic acid
Identifier
FormulaC21 H41 O7 P
Molecular Weight436.52
SMILES
PubChem49837858
Formal Charge0
Total Atoms70
Total Chiral Atoms1
Total Bonds69
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP43657
Sequence
>9ITE_nogp_Chain_R
HCFYNDSFK YTLYGCMFS MVFVLGLIS NCVAIYIFC VLKVRNETT 
TYMINLAMS DLLFVFTLP FRIFYFTTR NWPFGDLLC KISVMLFYT 
NMYGSILFL TCISVDRFL AIVYPFKSK TLRTKRNAK IVCTGVWLT 
VIGGSAPAV FVQSTHASA CFENFPEAT WKTYLSRIV IFIEIVGFF 
IPLILNVTC SSMVLKTLT KPVTLSRSK INKTKVLKM IFVHLIIFC 
FCFVPYNIN LILYSLVRT QTFVNCSVV AAVRTMYPI TLCIAVSNC 
CFDPIVYYF TSDTIQNSA R


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9ITBALipidLysophospholipidLPA6Homo sapiensLPA-chim(NtGi1-Gs-CtGq)/β1/γ22.892025-01-15doi.org/10.1073/pnas.2415426122
9ITB (No Gprot) ALipidLysophospholipidLPA6Homo sapiensLPA-2.892025-01-15doi.org/10.1073/pnas.2415426122
9ITEALipidLysophospholipidLPA6Homo sapiensLPA-chim(NtGi2-G13)/β1/γ23.062025-01-15doi.org/10.1073/pnas.2415426122
9ITE (No Gprot) ALipidLysophospholipidLPA6Homo sapiensLPA-3.062025-01-15doi.org/10.1073/pnas.2415426122
5XSZALipidLysophospholipidLPA6Danio rerioGlyceryl-mono-oleate--3.22017-08-1610.1038/nature23448




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Download 9ITE_nogp.zip



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