Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:K26 10.562524
2R:R:Y30 5.844525
3R:R:F34 4.8425407
4R:R:F38 5.385406
5R:R:F52 4.284516
6R:R:Y65 6.914547
7R:R:M66 6.445418
8R:R:V70 3.93408
9R:R:D73 6.304519
10R:R:F76 5.95167627
11R:R:L80 3.7875408
12R:R:R83 5.345426
13R:R:W92 8.56714738
14R:R:F94 7.75667637
15R:R:C99 5.5875439
16R:R:K100 6.052537
17R:R:F106 7.668526
18R:R:T108 5405
19R:R:F116 9.63417
20R:R:D123 5.626548
21R:R:R124 6.58559
22R:R:F125 6.6568
23R:R:R138 6.5775447
24R:R:K140 4.36403
25R:R:W151 5.174519
26R:R:N166 4.918534
27R:R:E199 7.8405
28R:R:N210 8.7525417
29R:R:M241 6.11457
30R:R:I242 5.215407
31R:R:I248 3.5975406
32R:R:F249 5.952519
33R:R:F253 7.665418
34R:R:I254 3.578506
35R:R:Y256 6.71571726
36R:R:L260 4.965426
37R:R:L265 2.045404
38R:R:R267 7.4825474
39R:R:R281 6.494524
40R:R:Y284 5.454525
41R:R:P285 6.6275423
42R:R:L288 4.735425
43R:R:N294 8.4225419
44R:R:F297 3.785406
45R:R:D298 8.536519
46R:R:Y302 8.568519
47L:L:?1 7.54540
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:K26 R:R:Y30 14.88969.55YesYes245
2R:R:F34 R:R:Y30 13.07753.09YesYes075
3R:R:R281 R:R:Y284 39.74925.14YesYes245
4R:R:L288 R:R:Y284 19.95383.52YesYes255
5R:R:F34 R:R:L80 11.0074.87YesYes078
6R:R:F34 R:R:R83 10.52477.48YesYes076
7R:R:F106 R:R:L288 26.03444.87YesYes265
8R:R:F106 R:R:Y107 59.468815.47YesNo065
9R:R:V103 R:R:Y107 58.4182.52NoNo055
10R:R:N166 R:R:V103 57.34322.96YesNo045
11R:R:C99 R:R:N166 22.17936.3YesYes394
12R:R:C99 R:R:W92 21.38353.92YesYes398
13R:R:F94 R:R:W92 25.214521.05YesYes378
14R:R:F85 R:R:F94 12.6712.14NoYes047
15R:R:F85 R:R:Q89 10.20777.03NoNo043
16R:R:Y256 R:R:Y284 23.343810.92YesYes265
17R:R:F106 R:R:Y256 47.11135.16YesYes266
18R:R:C178 R:R:N166 22.24486.3NoYes394
19R:R:C178 R:R:W92 21.049419.59NoYes398
20R:R:F76 R:R:L80 22.91323.65YesYes078
21R:R:F76 R:R:N109 96.513613.29YesNo078
22R:R:D73 R:R:N109 81.18656.73YesNo098
23R:R:F76 R:R:R83 15.91623.21YesYes276
24R:R:F106 R:R:F76 1006.43YesYes267
25R:R:D298 R:R:D73 60.75386.65YesYes199
26R:R:D298 R:R:Y302 43.201210.34YesYes199
27R:R:F52 R:R:Y302 11.04496.19YesYes169
28R:R:M66 R:R:Y302 34.943311.97YesYes189
29R:R:F76 R:R:T79 38.69853.89YesNo076
30R:R:L105 R:R:T79 37.86474.42NoNo056
31R:R:L105 R:R:T108 36.43854.42NoYes055
32R:R:T108 R:R:V154 24.04664.76YesNo057
33R:R:G112 R:R:V154 23.83991.84NoNo077
34R:R:G112 R:R:V150 23.71591.84NoNo077
35R:R:L115 R:R:V150 55.34165.96NoNo057
36L:L:?1 R:R:L115 53.98083.66YesNo005
37L:L:?1 R:R:D123 31.27094.79YesYes408
38R:R:D298 R:R:L69 36.45239.5YesNo199
39R:R:F116 R:R:L69 40.39348.53YesNo179
40R:R:F116 R:R:V150 34.371413.11YesNo077
41R:R:D123 R:R:R138 28.11863.57YesYes487
42R:R:M66 R:R:T305 34.85724.52YesNo086
43R:R:M241 R:R:T305 33.29316.02YesNo076
44R:R:M241 R:R:R124 21.75564.96YesYes579
45R:R:A127 R:R:R124 17.56985.53NoYes089
46R:R:A127 R:R:R138 16.88775.53NoYes087
47L:L:?1 R:R:Y65 17.239110.34YesYes407
48R:R:A143 R:R:Y65 16.08855.34NoYes077
49R:R:A143 R:R:T64 14.3283.36NoNo076
50R:R:K140 R:R:T64 12.56074.5YesNo036
51R:R:L155 R:R:T108 11.9134.42NoYes035
52R:R:L155 R:R:W151 10.32145.69NoYes039
53R:R:D73 R:R:N294 16.26078.08YesYes199
54R:R:N109 R:R:S113 15.44085.96NoNo089
55R:R:N294 R:R:S113 15.3347.45YesNo099
56R:R:L155 R:R:L159 12.31612.77NoNo034
57R:R:L159 R:R:S104 10.13196.01NoNo044
58R:R:E199 R:R:L260 10.02863.98YesYes056
59R:R:N257 R:R:Y256 16.62595.81NoYes076
60R:R:F203 R:R:N257 13.115424.17NoNo087
61R:R:F203 R:R:I254 13.12233.77NoYes086
62R:R:I254 R:R:L207 13.69074.28YesNo067
63R:R:F249 R:R:L207 14.53826.09YesNo097
64R:R:F253 R:R:N294 40.15576.04YesYes189
65R:R:D298 R:R:L117 13.27044.07YesNo098
66R:R:F249 R:R:L117 12.56424.87YesNo098
67R:R:R138 R:R:S134 42.8677.91YesNo076
68R:R:L126 R:R:S134 37.92689.01NoNo056
69R:R:F125 R:R:L126 35.44634.87YesNo085
70R:R:F125 R:R:V129 10.20776.55YesNo687
71R:R:F125 R:R:Y130 10.20773.09YesNo686
72R:R:F125 R:R:M216 10.26298.71YesNo084
73R:R:I242 R:R:M241 13.88712.92YesYes077
74R:R:R281 R:R:Y263 38.18175.14YesNo044
75R:R:V280 R:R:Y263 35.99065.05NoNo054
76R:R:V266 R:R:V280 22.69963.21NoNo035
77R:R:E277 R:R:V266 11.43424.28NoNo043
78R:R:E199 R:R:V261 19.26142.85YesNo055
79R:R:L265 R:R:V261 16.87741.49YesNo045
80R:R:C252 R:R:F253 35.13634.19NoYes078
81R:R:C252 R:R:F297 33.44474.19NoYes076
82R:R:F297 R:R:I248 24.88373.77YesYes066
83R:R:I248 R:R:V244 19.66443.07YesNo065
84R:R:F304 R:R:V244 17.91096.55NoNo075
85R:R:N259 R:R:V280 11.43422.96NoNo055
86R:R:E199 R:R:N257 12.946613.15YesNo057
87R:R:L260 R:R:Y256 10.27669.38YesYes266
88R:R:D298 R:R:N294 11.010412.12YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:D123 R:R:E61 6.5 4 Yes No 8 6 1 2
R:R:E61 R:R:R138 9.3 4 No Yes 6 7 2 2
R:R:D123 R:R:T62 8.67 4 Yes No 8 7 1 2
R:R:C119 R:R:Y65 6.72 4 No Yes 6 7 1 1
R:R:D123 R:R:Y65 4.6 4 Yes Yes 8 7 1 1
R:R:A143 R:R:Y65 5.34 0 No Yes 7 7 2 1
R:R:V146 R:R:Y65 7.57 0 No Yes 5 7 2 1
L:L:?1 R:R:Y65 10.34 4 Yes Yes 0 7 0 1
R:R:L115 R:R:V150 5.96 0 No No 5 7 1 2
L:L:?1 R:R:L115 3.66 4 Yes No 0 5 0 1
L:L:?1 R:R:C119 8.4 4 Yes No 0 6 0 1
L:L:?1 R:R:V122 10.51 4 Yes No 0 6 0 1
R:R:D123 R:R:R138 3.57 4 Yes Yes 8 7 1 2
L:L:?1 R:R:D123 4.79 4 Yes Yes 0 8 0 1
R:R:L209 R:R:V122 2.98 0 No No 7 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

ShowSimilarityNetwork TypeNameLigandDescription
40.00Single8G2YLPC8G2Y-ADGRF1-LPC-chim(Gs-CtGq)/&β;1/&γ;2
28.57Single7WU4K6G7WU4-ADGRF1-K6G-Gi1/&β;1/&γ;2
27.78Single5KW2PubChem 1330539535KW2-FFA1 (GPR40)-PubChem 133053953
25.00Single5TZYMK8666; PubChem 1270535975TZY-FFA1 (GPR40)-MK8666; PubChem 127053597
25.00Single7WU3K6G7WU3-ADGRF1-K6G-Gs/&β;1/&γ;2
23.08Single6C1RAvacopan; Na6C1R-C5a1-PMX53-Avacopan; Na
23.08Consensusc5a1_off_ortoalloOther Ligand6C1Q-C5a1-PMX53-NDT9513727 6C1R-C5a1-PMX53-Avacopan; Na
21.43Single7WU5K6G7WU5-ADGRF1-K6G-Gi1/&β;1/&γ;2
20.00Single6OBAGTPL110746OBA-β2-(S)-Alprenolol-GTPL11074
20.00Consensusbeta2_off_alloOther Ligand6OBA-β2-(S)-Alprenolol-GTPL11074
18.18Single7CKZMevidalen7CKZ-D1-Dopamine-Mevidalen-Gs/&β;1/&γ;2
16.67Single6C1QNDT95137276C1Q-C5a1-PMX53-NDT9513727
15.38Single5O9HNDT95137275O9H-C5a1-NDT9513727
15.38Single8IYXYL-3658IYX-GPR34-YL-365
8.33Single8X2K5YM8X2K-GPR3-5YM-chim(NtGi1-Gs)/&β;1/&γ;2
7.69Single8U8FPML8U8F-GPR3-PML-Gs/&β;1/&γ;2
7.69Consensusd1_on_alloOther Ligand7LJC-D1-PubChem 86764103-Mevidalen-Gs/&β;1/&γ;2 7CKZ-D1-Dopamine-Mevidalen-Gs/&β;1/&γ;2
7.14Single6N48PubChem 1384542566N48-β2-BI167107-PubChem 138454256
6.67Consensusadgrf1_on_alloOther Ligand7WU5-ADGRF1-K6G-Gi1/&β;1/&γ;2 8G2Y-ADGRF1-LPC-chim(Gs-CtGq)/&β;1/&γ;2
5.88Single8JLPRalmitaront8JLP-TA1-Ralmitaront-Gs/&β;1/&γ;2
5.88Consensuss1p2_onOrthosteric Ligand7T6B-S1P2-S1P-chim(NtGi1L-G13)/&β;1/&γ;2
5.56Single7SHEPI; PE7SHE-GPR158-PI; PE
5.56Single7T6BS1P7T6B-S1P2-S1P-chim(NtGi1L-G13)/&β;1/&γ;2
5.56Single7XZ5Lysophosphatidylcholine7XZ5-GPR119-Lysophosphatidylcholine-Gs/&β;1/&γ;2
5.26Single7SHFPI; PE7SHF-GPR158-PI; PE-B5; RGS7
5.00Single8SAI1-oleoyl-2-hydroxy-sn-glycero-3-phospho-L-serine8SAI-GPR34-1-oleoyl-2-hydroxy-sn-glycero-3-phospho-L-serine-Gi1/&β;1/&γ;2
4.76Single6RZ8ONO-20803656RZ8-CysLT2-ONO-2080365
4.55Single7SHEPI; PE7SHE-GPR158-PI; PE
4.55Single7SHFPI; PE7SHF-GPR158-PI; PE-B5; RGS7
3.85Single7XV3Lysophosphatidylserine7XV3-GPR174-Lysophosphatidylserine-chim(NtGi1-Gs)/&β;1/&γ;2

PDB Summary
PDB 5XSZ
Class A
SubFamily Lipid
Type Lysophospholipid (LPA)
SubType LPA6
Species Danio rerio
Ligand Glyceryl Mono-oleate
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.2
Date 2017-08-16
D.O.I. 10.1038/nature23448
Net Summary
Imin 3.07
Number of Linked Nodes 267
Number of Links 302
Number of Hubs 47
Number of Links mediated by Hubs 169
Number of Communities 7
Number of Nodes involved in Communities 50
Number of Links involved in Communities 68
Path Summary
Number Of Nodes in MetaPath 89
Number Of Links MetaPath 88
Number of Shortest Paths 65287
Length Of Smallest Path 3
Average Path Length 14.5154
Length of Longest Path 30
Minimum Path Strength 1.335
Average Path Strength 6.37071
Maximum Path Strength 20.32
Minimum Path Correlation 0.7
Average Path Correlation 0.94017
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 54.1846
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.7116
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeOLC
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeOLC
Name(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
Synonyms1-Oleoyl-R-glycerol
Identifier[(2R)-2,3-dihydroxypropyl] (Z)-octadec-9-enoate
FormulaC21 H40 O4
Molecular Weight356.54
SMILESCCCCCCCC\C=C/CCCCCCCC(=O)OC[C@@H](CO)O
PubChem11451146
Formal Charge0
Total Atoms65
Total Chiral Atoms1
Total Bonds64
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ08BG4
Sequence
>5XSZ_Chain_R
DNFKYPLYS MVFSIVFMV GLITNVAAM YIFMCSLKL RNETTTYMM 
NLVVSDLLF VLTLPLRVF YFVQQNWPF GSLLCKLSV SLFYTNMYG 
SILFLTCIS VDRFLAIVY PFRSRGLRT KRNAKIVCA AVWVLVLSG 
SLPTGFMLN STNKLENNS ISCFEWKSH LSKVVIFIE TVGFLIPLM 
LNVVCSAMV LQTLRRPNT VLNKKKILR MIIVHLFIF CFCFIPYNV 
NLVFYSLVR TNTLKGCAA ESVVRTIYP IALCIAVSN CCFDPIVYY 
FTSETIQNS ASSEDLYFQ


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 5XSZ.zip



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