Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y6 7.34436
2R:R:Q9 4.2375432
3R:R:F27 5.7025488
4R:R:V60 3.784557
5R:R:K76 5.4225488
6R:R:L93 3.7675416
7R:R:V95 5.4925402
8R:R:L96 4.31414
9R:R:L104 3.98415
10R:R:F108 4.99516
11R:R:F110 7.32407
12R:R:F114 7.9025427
13R:R:F115 6.425428
14R:R:L117 5.8925428
15R:R:L121 4.48405
16R:R:Q122 4.8675407
17R:R:L123 4.17548
18R:R:W131 4.5625456
19R:R:L132 4.6175455
20R:R:Y140 8.005458
21R:R:I144 7.77455
22R:R:F163 4.78527
23R:R:Q176 6.83475
24R:R:Y177 6.736539
25R:R:C178 5.6514
26R:R:P179 4.628518
27R:R:T181 6.895419
28R:R:W182 6.3975419
29R:R:F184 5.12438
30R:R:I185 7.43407
31R:R:Q186 7.6975435
32R:R:H189 8.49434
33R:R:Y199 6.06667606
34R:R:L206 4.6775425
35R:R:L210 4.245426
36R:R:H263 9.09408
37R:R:L264 4.285497
38R:R:I282 5.48254118
39R:R:R284 5.245405
40R:R:D319 5.2075449
41R:R:F323 4.8409
42R:R:I324 3.04409
43R:R:F326 8.1975405
44R:R:F331 7.3075407
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:Q186 R:R:Y6 10.98246.76YesYes356
2R:R:Q9 R:R:Y6 60.74275.64YesYes326
3R:R:Y177 R:R:Y6 68.959511.91YesYes396
4R:R:D305 R:R:Y177 21.47689.2NoYes379
5R:R:D305 R:R:E301 36.71722.6NoNo073
6R:R:E301 R:R:F5 13.03012.33NoNo034
7R:R:F5 R:R:V188 11.416218.35NoNo043
8R:R:N10 R:R:Q9 60.93365.28NoYes062
9R:R:N10 R:R:R94 60.27854.82NoNo062
10R:R:R94 R:R:S92 56.33933.95NoNo725
11R:R:S92 R:R:V95 56.25694.85NoYes052
12R:R:R91 R:R:V95 52.78637.85NoYes032
13R:R:L96 R:R:R91 51.23534.86YesNo143
14R:R:L104 R:R:L96 49.93174.15YesYes154
15R:R:L104 R:R:V82 22.32714.47YesNo156
16R:R:F108 R:R:V82 21.5183.93YesNo166
17R:R:F108 R:R:V83 38.0232.62YesNo169
18R:R:T181 R:R:V83 32.84743.17YesNo199
19R:R:P179 R:R:T181 24.41383.5YesYes189
20R:R:C178 R:R:P179 17.58965.65YesYes148
21R:R:L104 R:R:L93 23.19044.15YesYes156
22R:R:F108 R:R:L93 21.574.87YesYes166
23R:R:F184 R:R:Y177 81.53843.09YesYes389
24R:R:F184 R:R:I185 10011.3YesYes087
25R:R:I185 R:R:Y199 51.47616.04YesYes076
26R:R:F163 R:R:Y199 51.9885.16YesYes076
27R:R:F163 R:R:L117 96.89384.87YesYes278
28R:R:L117 R:R:L121 91.17375.54YesYes085
29R:R:L121 R:R:V156 91.68355.96YesNo056
30R:R:Q122 R:R:V156 93.35372.87YesNo076
31R:R:L68 R:R:Q122 91.43627.99NoYes097
32R:R:D72 R:R:L68 90.45149.5NoNo099
33R:R:D319 R:R:D72 89.95252.66YesNo099
34R:R:D319 R:R:P320 19.24473.22YesNo099
35R:R:N34 R:R:P320 18.32514.66NoNo099
36R:R:K76 R:R:N34 17.51164.2YesNo089
37R:R:I185 R:R:Y203 49.85364.84YesNo078
38R:R:F163 R:R:Y203 49.7564.13YesNo078
39R:R:D319 R:R:F274 69.592810.75YesNo499
40R:R:F274 R:R:L123 69.67534.87NoYes498
41R:R:L123 R:R:M270 38.67162.83YesNo489
42R:R:L266 R:R:M270 41.61734.24NoNo089
43R:R:F326 R:R:L266 15.040910.96YesNo058
44R:R:F326 R:R:F331 12.23189.65YesYes057
45R:R:F323 R:R:V65 22.63513.93YesNo098
46R:R:F61 R:R:V65 23.80213.93NoNo098
47R:R:F61 R:R:L266 27.72398.53NoNo098
48R:R:F323 R:R:R327 20.02996.41YesNo099
49R:R:L123 R:R:M126 26.55262.83YesNo489
50R:R:L64 R:R:M126 29.38987.07NoNo089
51R:R:L64 R:R:V60 25.69142.98NoYes087
52R:R:I144 R:R:V60 12.75034.61YesYes557
53R:R:L225 R:R:L261 12.12772.77NoNo095
54R:R:D262 R:R:L261 14.08862.71NoNo095
55R:R:D262 R:R:H336 14.997512.61NoNo094
56R:R:H336 R:R:R332 17.89335.64NoNo046
57R:R:R327 R:R:R332 18.79354.26NoNo096
58R:R:I144 R:R:L132 11.97152.85YesYes555
59R:R:E301 R:R:R284 22.619910.47NoYes035
60R:R:A308 R:R:R284 11.41622.77NoYes075
61R:R:D305 R:R:L309 16.65044.07NoNo377
62R:R:F184 R:R:L309 17.29033.65YesNo387
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 9UWD
Class A
SubFamily Lipid
Type Prostaglandin
SubType DP1
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution -
Date 2025-04-09
D.O.I. doi.org/10.1073/pnas.2501902122
Net Summary
Imin 2.66
Number of Linked Nodes 293
Number of Links 322
Number of Hubs 44
Number of Links mediated by Hubs 156
Number of Communities 11
Number of Nodes involved in Communities 74
Number of Links involved in Communities 94
Path Summary
Number Of Nodes in MetaPath 63
Number Of Links MetaPath 62
Number of Shortest Paths 68886
Length Of Smallest Path 3
Average Path Length 21.3935
Length of Longest Path 48
Minimum Path Strength 1.315
Average Path Strength 5.67077
Maximum Path Strength 19.78
Minimum Path Correlation 0.7
Average Path Correlation 0.930791
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 2.5
Average % Of Corr. Nodes 42.0998
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.6802
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• multicellular organismal process   • sleep   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • establishment of organelle localization   • regulated exocytosis   • cellular localization   • response to stimulus   • transport   • cell activation involved in immune response   • leukocyte degranulation   • myeloid leukocyte activation   • myeloid leukocyte mediated immunity   • vesicle-mediated transport   • leukocyte activation   • localization   • secretion by cell   • organelle localization   • leukocyte activation involved in immune response   • establishment of localization in cell   • mast cell activation   • leukocyte mediated immunity   • mast cell mediated immunity   • immune response   • secretion   • cell activation   • vacuolar localization   • export from cell   • mast cell degranulation   • establishment of localization   • myeloid cell activation involved in immune response   • immune effector process   • mast cell activation involved in immune response   • exocytosis   • immune system process   • lysosome localization   • cellular process   • developmental process   • multicellular organism development   • sex determination   • male sex determination   • reproductive process   • anatomical structure development   • developmental process involved in reproduction   • defense response   • response to stress   • inflammatory response   • cellular response to stimulus   • response to ketone   • response to prostaglandin   • response to lipid   • cellular response to prostaglandin D stimulus   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to prostaglandin D   • response to chemical   • cellular response to lipid   • cellular response to ketone   • cellular response to hormone stimulus   • regulation of biological process   • regulation of cellular process   • signaling   • G protein-coupled receptor signaling pathway   • signal transduction   • cell communication   • carbohydrate derivative metabolic process   • primary metabolic process   • nucleoside metabolic process   • purine-containing compound metabolic process   • nucleobase-containing compound metabolic process   • adenosine metabolic process   • nucleobase-containing small molecule metabolic process   • metabolic process   • small molecule metabolic process   • purine nucleoside metabolic process   • ribonucleoside metabolic process   • purine ribonucleoside metabolic process   • cellular anatomical structure   • membrane   • cell periphery   • plasma membrane
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ13258
Sequence
>9UWD_Chain_R
MKSPFYRCQ NTTSVEKGN SAVMGGVLF STGLLGNLL ALGLLARSG 
LGWCSRRPL RPLPSVFYM LVCGLTVTD LLGKCLLSP VVLAAYAQN 
RSLRVLAPA LDNSLCQAF AFFMSFFGL SSTLQLLAM ALECWLSLG 
HPFFYRRHI TLRLGALVA PVVSAFSLA FCALPFMGF GKFVQYCPG 
TWCFIQMVH EEGSLSVLG YSVLYSSLM ALLVLATVL CNLGAMRNL 
YALEELDHL LLLALMTVL FTMCSLPVI YRAYYGAFK DVKEKNRTS 
EEAEDLRAL RFLSVISIV DPWIFIIFR SPVFRIFFH KIFI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8ZVZALipidProstaglandinDP1Homo sapiensBW245C-Gs/β1/γ22.352025-05-28doi.org/10.1073/pnas.2501902122
8ZVZ (No Gprot) ALipidProstaglandinDP1Homo sapiensBW245C-2.352025-05-28doi.org/10.1073/pnas.2501902122
8ZW0ALipidProstaglandinDP1Homo sapiensPGD2-Gs/β1/γ22.722025-05-28doi.org/10.1073/pnas.2501902122
8ZW0 (No Gprot) ALipidProstaglandinDP1Homo sapiensPGD2-2.722025-05-28doi.org/10.1073/pnas.2501902122
9AU0ALipidProstaglandinDP1Homo sapiensBW245C-Gs/β1/γ22.452025-08-27To be published
9AU0 (No Gprot) ALipidProstaglandinDP1Homo sapiensBW245C-2.452025-08-27To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9UWD.zip



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