Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:F5 7.62167614
2R:R:Y6 8.724516
3R:R:F27 6.44408
4R:R:V60 3.04507
5R:R:L68 6.78439
6R:R:D72 6.718539
7R:R:S80 8.1575408
8R:R:Y87 8.9775408
9R:R:F108 5.26516
10R:R:M112 5.7125418
11R:R:F114 6.076507
12R:R:F115 6.426568
13R:R:L117 5.185428
14R:R:L121 5.2425405
15R:R:M126 4.73459
16R:R:F163 4.574527
17R:R:F174 6.71506
18R:R:Y177 8.855619
19R:R:T181 7.815409
20R:R:W182 10.588519
21R:R:F184 5.45618
22R:R:I185 6.342507
23R:R:Q186 6.712515
24R:R:H189 6.324514
25R:R:S193 6.3675413
26R:R:Y199 7.86667626
27R:R:Y203 5.8925408
28R:R:L210 5.6275406
29R:R:L225 3.4375479
30R:R:E260 6.3625409
31R:R:F274 6.44539
32R:R:I282 3.9125488
33R:R:Y287 5.9525414
34R:R:D292 6.6025412
35R:R:E301 6.442513
36R:R:E302 6.488513
37R:R:R310 9.0975409
38R:R:I317 3.9625409
39R:R:D319 6.058539
40R:R:I322 3.8375408
41R:R:I324 3.72409
42L:L:?1 7.931671210
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F5 R:R:Y6 14.210715.47YesYes146
2R:R:Y177 R:R:Y6 23.79917.94YesYes196
3R:R:E302 R:R:F5 13.8610.49YesYes134
4R:R:E302 R:R:Y177 22.33015.61YesYes139
5R:R:F184 R:R:Y177 57.04785.16YesYes189
6R:R:F184 R:R:M112 54.61496.22YesYes188
7R:R:F108 R:R:M112 24.58713.73YesYes168
8R:R:F108 R:R:L93 13.03934.87YesNo066
9R:R:C183 R:R:L93 12.16334.76NoNo096
10R:R:F274 R:R:L123 51.36134.87YesNo398
11R:R:F274 R:R:T120 1005.19YesNo097
12R:R:M207 R:R:T120 97.05757.53NoNo077
13R:R:M207 R:R:Y203 98.051910.78NoYes078
14R:R:S113 R:R:Y203 50.60153.82NoYes078
15R:R:F184 R:R:S113 50.45723.96YesNo087
16R:R:D319 R:R:L123 46.15518.14YesNo398
17R:R:D319 R:R:I315 46.39414.2YesNo099
18R:R:F274 R:R:I315 47.40535.02YesNo099
19R:R:I185 R:R:Y203 54.59694.84YesYes078
20R:R:F184 R:R:I185 59.75027.54YesYes087
21R:R:I324 R:R:V65 45.59933.07YesNo098
22R:R:M126 R:R:V65 46.47754.56YesNo598
23R:R:F323 R:R:M126 74.67334.98NoYes099
24R:R:D319 R:R:F323 86.31817.17YesNo099
25R:R:I324 R:R:L40 33.3574.28YesNo098
26R:R:L40 R:R:S328 32.39426.01NoNo087
27R:R:L64 R:R:M126 29.67845.65NoYes089
28R:R:L64 R:R:V60 26.77312.98NoYes087
29R:R:I144 R:R:V60 16.09684.61NoYes057
30R:R:F163 R:R:Y203 12.62334.13YesYes078
31R:R:F108 R:R:V82 11.24115.24YesNo066
32R:R:L104 R:R:V82 10.31675.96NoNo056
33R:R:F139 R:R:I144 13.21862.51NoNo055
34R:R:F139 R:R:L132 10.20173.65NoNo055
35R:R:E260 R:R:L225 12.13062.65YesYes099
36R:R:E259 R:R:E260 18.92992.54NoYes069
37R:R:D262 R:R:E259 19.91863.9NoNo096
38R:R:D262 R:R:L258 20.83749.5NoNo996
39R:R:L258 R:R:R332 24.7379.72NoNo066
40R:R:P329 R:R:R332 29.50925.76NoNo076
41R:R:P329 R:R:S328 30.47323.56NoNo077
42R:R:D305 R:R:Y177 13.13855.75NoYes079
43R:R:D305 R:R:R284 12.413613.1NoNo075
44R:R:E301 R:R:F5 17.31663.5YesYes134
45R:R:K291 R:R:Y287 11.80267.17NoYes034
46R:R:E301 R:R:Y287 16.35725.61YesYes134
47R:R:F323 R:R:M270 13.13187.46NoNo099
48R:R:I322 R:R:M270 12.13525.83YesNo089
49L:L:?1 R:R:M112 31.0658.66YesYes108
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:N18 R:R:Y87 5.81 0 No Yes 3 8 2 1
R:R:A20 R:R:Y87 5.34 0 No Yes 6 8 2 1
R:R:M22 R:R:R310 8.69 0 No Yes 3 9 2 1
L:L:?1 R:R:G23 3.49 1 Yes No 0 8 0 1
R:R:F27 R:R:K76 3.72 0 Yes No 8 8 2 1
R:R:F27 R:R:S80 15.85 0 Yes Yes 8 8 2 1
L:L:?1 R:R:K76 11.52 1 Yes No 0 8 0 1
R:R:F108 R:R:L79 8.53 1 Yes No 6 6 2 1
R:R:L79 R:R:M112 4.24 1 No Yes 6 8 1 1
L:L:?1 R:R:L79 11.3 1 Yes No 0 6 0 1
R:R:P81 R:R:S80 3.56 0 No Yes 8 8 2 1
L:L:?1 R:R:S80 10.22 1 Yes Yes 0 8 0 1
R:R:F108 R:R:V83 3.93 1 Yes No 6 9 2 1
R:R:T181 R:R:V83 4.76 0 Yes No 9 9 2 1
L:L:?1 R:R:V83 8.11 1 Yes No 0 9 0 1
R:R:T181 R:R:Y87 19.97 0 Yes Yes 9 8 2 1
L:L:?1 R:R:Y87 4.79 1 Yes Yes 0 8 0 1
R:R:F108 R:R:M112 3.73 1 Yes Yes 6 8 2 1
R:R:F184 R:R:M112 6.22 1 Yes Yes 8 8 2 1
L:L:?1 R:R:M112 8.66 1 Yes Yes 0 8 0 1
R:R:W182 R:R:Y177 25.08 1 Yes Yes 9 9 1 2
R:R:F184 R:R:Y177 5.16 1 Yes Yes 8 9 2 2
R:R:P179 R:R:W182 6.76 1 No Yes 8 9 2 1
R:R:L306 R:R:P179 4.93 1 No No 7 8 2 2
R:R:L306 R:R:W182 5.69 1 No Yes 7 9 2 1
R:R:L309 R:R:W182 4.56 0 No Yes 7 9 2 1
L:L:?1 R:R:W182 10.85 1 Yes Yes 0 9 0 1
R:R:F184 R:R:L309 6.09 1 Yes No 8 7 2 2
R:R:L312 R:R:V281 4.47 0 No No 8 8 1 2
R:R:L306 R:R:R310 14.58 1 No Yes 7 9 2 1
R:R:R307 R:R:R310 3.2 0 No Yes 4 9 2 1
L:L:?1 R:R:R310 9.92 1 Yes Yes 0 9 0 1
L:L:?1 R:R:L312 3.77 1 Yes No 0 8 0 1
L:L:?1 R:R:S313 10.22 1 Yes No 0 9 0 1
R:R:L84 R:R:S80 3 0 No Yes 7 8 2 1
R:R:I317 R:R:K76 2.91 0 Yes No 9 8 2 1
L:L:?1 R:R:G116 2.33 1 Yes No 0 8 0 1
R:R:G23 R:R:G24 2.11 0 No No 8 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8ZVZ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.17
Number of Linked Nodes 295
Number of Links 332
Number of Hubs 42
Number of Links mediated by Hubs 163
Number of Communities 9
Number of Nodes involved in Communities 60
Number of Links involved in Communities 78
Path Summary
Number Of Nodes in MetaPath 50
Number Of Links MetaPath 49
Number of Shortest Paths 135697
Length Of Smallest Path 3
Average Path Length 16.4167
Length of Longest Path 34
Minimum Path Strength 1.51
Average Path Strength 6.03401
Maximum Path Strength 16.51
Minimum Path Correlation 0.7
Average Path Correlation 0.927382
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 42.0381
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.764
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ13258
Sequence
>8ZVZ_nogp_Chain_R
SPFYRCQNT TSVEKGNSA VMGGVLFST GLLGNLLAL GLLARSGLG 
PLPSVFYML VCGLTVTDL LGKCLLSPV VLAAYAQNR SLRVLAPAL 
DNSLCQAFA FFMSFFGLS STLQLLAMA LECWLSLGH PFFYRRHIT 
LRLGALVAP VVSAFSLAF CALPFMGFG KFVQYCPGT WCFIQMVHE 
EGSLSVLGY SVLYSSLMA LLVLATVLC NLGAMRNLY AMHRRLQRH 
PQPLEELDH LLLLALMTV LFTMCSLPV IYRAYYGAF KDVKEKNRT 
SEEAEDLRA LRFLSVISI VDPWIFIIF RSPVFRIFF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9E9SALipidProstanoidDP1Homo sapiensPGD2-Gs/β1/γ12.682025-09-03To be published
9E9S (No Gprot) ALipidProstanoidDP1Homo sapiensPGD2-2.682025-09-03To be published
9EE5ALipidProstanoidDP1Homo sapiensONO-2550289--2.892025-09-03doi.org/10.1038/s41467-025-64002-z
9EI5ALipidProstanoidDP1Homo sapiens---2.842025-09-03doi.org/10.1038/s41467-025-64002-z
9EKHALipidProstanoidDP1Homo sapiensONO-3030297--2.892025-09-03doi.org/10.1038/s41467-025-64002-z
9UWDALipidProstaglandinDP1Homo sapiens----2025-04-09doi.org/10.1073/pnas.2501902122
8ZVZALipidProstaglandinDP1Homo sapiensBW245C-Gs/β1/γ22.352025-05-28doi.org/10.1073/pnas.2501902122
8ZVZ (No Gprot) ALipidProstaglandinDP1Homo sapiensBW245C-2.352025-05-28doi.org/10.1073/pnas.2501902122
8ZW0ALipidProstaglandinDP1Homo sapiensPGD2-Gs/β1/γ22.722025-05-28doi.org/10.1073/pnas.2501902122
8ZW0 (No Gprot) ALipidProstaglandinDP1Homo sapiensPGD2-2.722025-05-28doi.org/10.1073/pnas.2501902122
9AU0ALipidProstaglandinDP1Homo sapiensBW245C-Gs/β1/γ22.452025-08-27To be published
9AU0 (No Gprot) ALipidProstaglandinDP1Homo sapiensBW245C-2.452025-08-27To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8ZVZ_nogp.zip



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