Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:K33 4.3575464
2R:R:L37 3.84464
3R:R:Y40 6.4775427
4R:R:N51 6.605409
5R:R:V54 5.1175419
6R:R:D69 4.3408
7R:R:V70 3.675416
8R:R:Y71 9.285487
9R:R:F72 4.66418
10R:R:I73 3.3225445
11R:R:N74 8.6175419
12R:R:L75 4.966519
13R:R:D79 6.132519
14R:R:F111 5.5427
15R:R:F116 5.762527
16R:R:F121 7.734517
17R:R:I122 5.65418
18R:R:Y130 7.272538
19R:R:V134 5.95437
20R:R:W152 4.79833619
21R:R:H162 10.924524
22R:R:F163 4.132504
23R:R:D176 6.4775404
24R:R:Y177 10.3385105
25R:R:L180 4.26254103
26R:R:I186 2.93403
27R:R:L201 4.735416
28R:R:Y208 8.5525408
29R:R:F237 5.236519
30R:R:F240 4.4675407
31R:R:W241 6.158518
32R:R:L255 3.325404
33R:R:F281 7.575427
34R:R:H283 7.5125419
35R:R:N287 6.884519
36R:R:P288 4.555419
37R:R:L290 4.525417
38R:R:Y291 5.28667619
39R:R:V292 6.335417
40R:R:F293 4.8425417
41R:R:F298 3.985418
42R:R:L302 6.7625406
43R:R:L311 3.324133
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:R271 R:R:S32 10.80992.64NoNo023
2R:R:I274 R:R:S32 12.32223.1NoNo053
3R:R:I274 R:R:T36 13.7251.52NoNo055
4R:R:T36 R:R:Y40 15.17268.74NoYes257
5R:R:F281 R:R:Y40 30.92737.22YesYes277
6R:R:F111 R:R:F281 14.28714.29YesYes277
7R:R:F111 R:R:Y112 42.91619.28YesNo275
8R:R:H162 R:R:Y112 34.867216.33YesNo245
9R:R:H162 R:R:L188 10012.86YesNo045
10R:R:L188 R:R:Y177 62.65553.52NoYes055
11R:R:T175 R:R:Y177 20.022917.48NoYes055
12R:R:M174 R:R:T175 18.2424.52NoNo045
13R:R:M90 R:R:Y40 13.82953.59NoYes077
14R:R:L37 R:R:M90 10.82482.83YesNo047
15R:R:F281 R:R:F82 20.709411.79YesNo277
16R:R:C284 R:R:F82 51.22384.19NoNo087
17R:R:C284 R:R:D79 51.71624.67NoYes089
18R:R:D79 R:R:N287 23.21166.73YesYes199
19R:R:N287 R:R:Y291 42.40873.49YesYes199
20R:R:L290 R:R:Y291 30.03183.52YesYes179
21R:R:L290 R:R:V236 28.67877.45YesNo176
22R:R:F240 R:R:V236 27.21623.93YesNo076
23R:R:C282 R:R:F240 20.592.79NoYes067
24R:R:C282 R:R:V43 18.34153.42NoNo067
25R:R:L86 R:R:V43 11.53622.98NoNo087
26R:R:D79 R:R:N51 31.673510.77YesYes099
27R:R:N51 R:R:P288 21.46069.77YesYes099
28R:R:F293 R:R:P288 18.34642.89YesYes179
29R:R:F293 R:R:L302 31.19597.31YesYes076
30R:R:L302 R:R:T57 15.20745.9YesNo066
31R:R:L305 R:R:T57 11.9544.42NoNo046
32R:R:F293 R:R:V292 17.75945.24YesYes177
33R:R:F72 R:R:Y291 35.295.16YesYes189
34R:R:F72 R:R:V292 21.54015.24YesYes187
35R:R:F298 R:R:F72 21.10743.22YesYes188
36R:R:D69 R:R:F298 14.82445.97YesYes088
37R:R:D79 R:R:L75 22.83354.07YesYes199
38R:R:F121 R:R:L75 86.09592.44YesYes179
39R:R:F121 R:R:W151 46.4635.01YesNo076
40R:R:E124 R:R:W151 27.519614.17NoNo066
41R:R:E124 R:R:Y71 24.803515.71NoYes067
42R:R:F121 R:R:N74 10.909416.92YesYes179
43R:R:F121 R:R:S148 10.93925.28YesNo177
44R:R:R139 R:R:Y71 16.79938.23NoYes877
45R:R:F121 R:R:W152 16.73969.02YesYes179
46R:R:I122 R:R:L75 33.81265.71YesYes189
47R:R:L188 R:R:P161 45.65223.28NoNo059
48R:R:I160 R:R:P161 44.02053.39NoNo059
49R:R:F163 R:R:I160 42.37892.51YesNo045
50R:R:F163 R:R:T108 34.02152.59YesNo046
51R:R:T108 R:R:V166 32.32027.93NoNo065
52R:R:C173 R:R:V166 30.60891.71NoNo095
53R:R:C173 R:R:Y92 16.26214.03NoNo096
54R:R:L99 R:R:Y92 10.93428.21NoNo076
55R:R:C104 R:R:C173 12.65057.28NoNo099
56R:R:C104 R:R:L99 10.87456.35NoNo097
57R:R:L99 R:R:P103 18.17733.28NoNo075
58R:R:P103 R:R:V102 10.93423.53NoNo053
59R:R:F116 R:R:M115 79.75824.98YesNo078
60R:R:M115 R:R:W241 80.63383.49NoYes088
61R:R:C120 R:R:W151 16.91877.84NoNo056
62R:R:H283 R:R:N287 44.22948.93YesYes199
63R:R:F237 R:R:H283 21.64963.39YesYes199
64R:R:F237 R:R:I204 29.58915.02YesNo197
65R:R:A126 R:R:I204 31.5643.25NoNo097
66R:R:A126 R:R:C207 40.88653.61NoNo096
67R:R:C207 R:R:Y130 38.72759.41NoYes068
68R:R:Y130 R:R:Y135 27.15655.96YesNo386
69R:R:Y131 R:R:Y135 25.93271.99NoNo056
70R:R:L127 R:R:Y131 21.30632.34NoNo065
71R:R:F237 R:R:W241 21.39598.02YesYes198
72R:R:V233 R:R:Y291 30.96715.05NoYes179
73R:R:V233 R:R:Y208 33.61363.79NoYes078
74R:R:A126 R:R:Y208 29.61896.67NoYes098
75R:R:L127 R:R:T123 16.60532.95NoNo967
76R:R:P200 R:R:T123 14.29213.5NoNo097
77R:R:I125 R:R:R129 10.52136.26NoNo089
78R:R:L230 R:R:Y208 28.400217.58NoYes078
79R:R:I211 R:R:L230 26.88792.85NoNo087
80R:R:F147 R:R:R139 14.222514.97NoNo057
81R:R:C120 R:R:F154 11.31732.79NoNo054
82R:R:P185 R:R:Y177 37.289820.86NoYes035
83R:R:L255 R:R:P185 35.59843.28YesNo043
84R:R:I186 R:R:L255 20.11745.71YesYes034
85R:R:I186 R:R:T252 12.9493.04YesNo036
86R:R:I199 R:R:P200 11.93413.39NoNo059
87R:R:H245 R:R:W241 18.55044.23NoYes088
88R:R:F197 R:R:H245 15.406419.23NoNo098
89R:R:F197 R:R:L242 14.07827.31NoNo095
90R:R:F237 R:R:L201 10.66567.31YesYes196
91R:R:I238 R:R:L201 10.24284.28NoYes056
92R:R:I211 R:R:V215 22.63461.54NoNo088
93R:R:S218 R:R:V215 19.23193.23NoNo058
94R:R:K223 R:R:S218 12.20281.53NoNo1275
95R:R:G224 R:R:K223 10.55121.74NoNo067
96R:R:F240 R:R:L279 12.5514.87YesNo077
97R:R:L242 R:R:P243 18.32653.28NoNo059
98R:R:P243 R:R:T276 16.91873.5NoNo096
99R:R:T247 R:R:T276 14.53096.28NoNo056
100R:R:K254 R:R:L255 12.9492.82NoYes034
101R:R:L302 R:R:L306 13.64548.3YesNo066
102R:R:L306 R:R:L311 10.26274.15NoYes1363
103R:R:F116 R:R:H162 68.2377.92YesYes274
104R:R:L279 R:R:P243 12.07843.28NoNo079
105R:R:H283 R:R:W241 57.601213.75YesYes198
106R:R:H283 R:R:I122 35.66313.98YesYes198
107R:R:I122 R:R:Y291 28.45997.25YesYes189
108R:R:F111 R:R:F82 30.08166.43YesNo277
109R:R:L75 R:R:N287 33.57879.61YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 5WB1
Class A
SubFamily Other
Type Unclassified
SubType US28
Species Human Cytomegalovirus (Strain Towne)
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.51
Date 2018-06-13
D.O.I. 10.7554/eLife.35850
Net Summary
Imin 2.8
Number of Linked Nodes 273
Number of Links 313
Number of Hubs 43
Number of Links mediated by Hubs 148
Number of Communities 13
Number of Nodes involved in Communities 75
Number of Links involved in Communities 95
Path Summary
Number Of Nodes in MetaPath 110
Number Of Links MetaPath 109
Number of Shortest Paths 54637
Length Of Smallest Path 3
Average Path Length 13.9627
Length of Longest Path 31
Minimum Path Strength 1.35
Average Path Strength 6.01867
Maximum Path Strength 19.17
Minimum Path Correlation 0.7
Average Path Correlation 0.932414
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 50.7355
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.9217
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • cell chemotaxis   • cellular response to stimulus   • chemotaxis   • response to stimulus   • response to external stimulus   • cellular response to chemical stimulus   • taxis   • response to chemical   • cell migration   • cellular process   • cell motility   • locomotion   • regulation of biological process   • regulation of cellular process   • signaling   • intracellular signal transduction   • cell communication   • calcium-mediated signaling   • intracellular signaling cassette   • signal transduction   • immune response   • immune system process   • cellular anatomical structure   • membrane   • host cell plasma membrane   • host cellular component   • host cell part   • host cell membrane
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP69333
Sequence
>5WB1_Chain_R
PCVFTDVLN QSKPVTLFL YGVVFLFGS IGNFLVIFT ITWRRRIQC 
SGDVYFINL AAADLLFVC TLPLWMQYL LDHNSLASV PCTLLTACF 
YVAMFASLC FITEIALDR YYAIVYMRY RPVKQACLF SIFWWIFAV 
IIAIPHFMV VTKKDNQCM TDYDYLEVS YPIILNVEL MLGAFVIPL 
SVISYCYYR ISRIVAVSQ SRHKGRIVR VLIAVVLVF IIFWLPYHL 
TLFVDTLKL LKWISSSCE FERSLKRAL ILTESLAFC HCCLNPLLY 
VFVGTKFRQ ELHCLLAEF RLVPRG


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7RKFAOtherUnclassifiedUS28Human betaherpesvirus 5FractalkineGDPchim(NtGi1-G11)/β1/γ242022-01-2610.1126/sciadv.abl5442
7RKF (No Gprot) AOtherUnclassifiedUS28Human betaherpesvirus 5FractalkineGDP42022-01-2610.1126/sciadv.abl5442
7RKNAOtherUnclassifiedUS28Human betaherpesvirus 5Fractalkine-Gi1/β1/γ23.62022-01-2610.1126/sciadv.abl5442
7RKN (No Gprot) AOtherUnclassifiedUS28Human betaherpesvirus 5Fractalkine-3.62022-01-2610.1126/sciadv.abl5442
7RKMAOtherUnclassifiedUS28Human betaherpesvirus 5Fractalkine-Gi1/β1/γ23.52022-01-2610.1126/sciadv.abl5442
7RKM (No Gprot) AOtherUnclassifiedUS28Human betaherpesvirus 5Fractalkine-3.52022-01-2610.1126/sciadv.abl5442
5WB2AOtherUnclassifiedUS28Human cytomegalovirus (strain towne)CX3CL1.35--3.52018-06-1310.7554/eLife.35850
5WB1AOtherUnclassifiedUS28Human cytomegalovirus (strain towne)---3.512018-06-1310.7554/eLife.35850
4XT3AOtherUnclassifiedUS28Human cytomegalovirus (strain ad169)Fractalkine--3.82015-03-0410.1126/science.aaa5026
4XT1AOtherUnclassifiedUS28Human cytomegalovirus (strain ad169)Fractalkine--2.892015-03-0410.1126/science.aaa5026




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 5WB1.zip



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