Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:K33 4.3575454
2R:R:L37 3.84454
3R:R:Y40 6.4775427
4R:R:N51 6.605409
5R:R:V54 5.1175419
6R:R:I58 4.7825416
7R:R:R62 5.9725415
8R:R:D69 4.2125418
9R:R:V70 3.675416
10R:R:F72 4.66418
11R:R:I73 3.3225415
12R:R:N74 8.6175419
13R:R:L75 4.966519
14R:R:D79 6.132519
15R:R:F111 5.5427
16R:R:F116 5.762527
17R:R:F121 7.734517
18R:R:I122 5.65418
19R:R:Y130 7.272538
20R:R:V134 5.95437
21R:R:W152 4.79833619
22R:R:H162 10.924524
23R:R:F163 4.132504
24R:R:D176 7.864104
25R:R:Y177 10.338595
26R:R:L180 4.2625493
27R:R:I186 2.93403
28R:R:L201 4.735416
29R:R:Y208 8.5525408
30R:R:F237 5.236519
31R:R:F240 4.4675407
32R:R:W241 6.158518
33R:R:F281 7.575427
34R:R:H283 7.5125419
35R:R:N287 6.884519
36R:R:P288 4.555419
37R:R:L290 4.525417
38R:R:Y291 5.28667619
39R:R:V292 6.335417
40R:R:F293 4.8425417
41R:R:F298 3.985418
42R:R:L302 6.7625406
43R:R:L311 3.324143
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:R271 R:R:S32 11.74932.64NoNo023
2R:R:I274 R:R:S32 13.39353.1NoNo053
3R:R:I274 R:R:T36 14.92551.52NoNo055
4R:R:T36 R:R:Y40 16.50038.74NoYes257
5R:R:F281 R:R:Y40 33.64127.22YesYes277
6R:R:F111 R:R:F281 15.0754.29YesYes277
7R:R:F111 R:R:Y112 44.99559.28YesNo275
8R:R:H162 R:R:Y112 35.135916.33YesNo245
9R:R:H162 R:R:L188 98.072912.86YesNo045
10R:R:L188 R:R:Y177 56.56863.52NoYes055
11R:R:T175 R:R:Y177 21.849117.48NoYes055
12R:R:M174 R:R:T175 19.9064.52NoNo045
13R:R:M90 R:R:Y40 15.03233.59NoYes077
14R:R:L37 R:R:M90 11.76532.83YesNo047
15R:R:F281 R:R:F82 22.996911.79YesNo277
16R:R:C284 R:R:F82 55.42634.19NoNo087
17R:R:C284 R:R:D79 56.12564.67NoYes089
18R:R:D79 R:R:N287 25.24966.73YesYes199
19R:R:N287 R:R:Y291 45.42793.49YesYes199
20R:R:L290 R:R:Y291 36.54513.52YesYes179
21R:R:L290 R:R:V236 35.12527.45YesNo176
22R:R:F240 R:R:V236 33.71593.93YesNo076
23R:R:C282 R:R:F240 21.42212.79NoYes067
24R:R:C282 R:R:V43 19.0843.42NoNo067
25R:R:L86 R:R:V43 12.00562.98NoNo087
26R:R:D79 R:R:N51 38.098510.77YesYes099
27R:R:N51 R:R:P288 26.43469.77YesYes099
28R:R:F293 R:R:P288 23.08232.89YesYes179
29R:R:F293 R:R:L302 39.50257.31YesYes076
30R:R:L302 R:R:T57 12.21375.9YesNo066
31R:R:F293 R:R:V292 21.40075.24YesYes177
32R:R:F72 R:R:Y291 41.14135.16YesYes189
33R:R:F72 R:R:V292 25.49515.24YesYes187
34R:R:F298 R:R:F72 23.42923.22YesYes188
35R:R:D69 R:R:F298 16.70855.97YesYes188
36R:R:D79 R:R:L75 25.46314.07YesYes199
37R:R:F121 R:R:L75 1002.44YesYes179
38R:R:F121 R:R:W151 50.94225.01YesNo076
39R:R:E124 R:R:W151 30.203414.17NoNo066
40R:R:E124 R:R:Y71 27.24615.71NoNo067
41R:R:D128 R:R:Y71 24.71579.2NoNo087
42R:R:F121 R:R:N74 14.882816.92YesYes179
43R:R:N74 R:R:V70 12.37922.96YesYes196
44R:R:F121 R:R:S148 14.91495.28YesNo177
45R:R:S148 R:R:V70 11.96283.23NoYes176
46R:R:C145 R:R:V70 12.14433.42NoYes046
47R:R:F121 R:R:W152 18.25129.02YesYes179
48R:R:I122 R:R:L75 39.68935.71YesYes189
49R:R:L188 R:R:P161 48.03823.28NoNo059
50R:R:I160 R:R:P161 46.24463.39NoNo059
51R:R:F163 R:R:I160 44.44032.51YesNo045
52R:R:F163 R:R:T108 35.25862.59YesNo046
53R:R:T108 R:R:V166 33.39037.93NoNo065
54R:R:C173 R:R:V166 31.51121.71NoNo095
55R:R:C173 R:R:Y92 15.80634.03NoNo096
56R:R:L99 R:R:Y92 11.92018.21NoNo076
57R:R:C104 R:R:C173 13.83127.28NoNo099
58R:R:C104 R:R:L99 11.88816.35NoNo097
59R:R:L99 R:R:P103 19.85273.28NoNo075
60R:R:P103 R:R:V102 11.94153.53NoNo053
61R:R:F116 R:R:Y112 10.11583.09YesNo275
62R:R:F116 R:R:M115 80.60114.98YesNo078
63R:R:M115 R:R:W241 81.68473.49NoYes088
64R:R:C120 R:R:W151 18.50747.84NoNo056
65R:R:C120 R:R:F154 12.37922.79NoNo054
66R:R:H283 R:R:N287 50.17358.93YesYes199
67R:R:F237 R:R:H283 27.29943.39YesYes199
68R:R:F237 R:R:I204 28.71945.02YesNo197
69R:R:A126 R:R:I204 31.51123.25NoNo097
70R:R:A126 R:R:C207 45.38523.61NoNo096
71R:R:C207 R:R:Y130 42.9839.41NoYes068
72R:R:Y130 R:R:Y135 30.1665.96YesNo386
73R:R:Y131 R:R:Y135 28.47381.99NoNo056
74R:R:L127 R:R:Y131 23.39192.34NoNo065
75R:R:F237 R:R:W241 19.24418.02YesYes198
76R:R:V233 R:R:Y291 30.58245.05NoYes179
77R:R:V233 R:R:Y208 33.21413.79NoYes078
78R:R:A126 R:R:Y208 30.58776.67NoYes098
79R:R:L127 R:R:T123 18.22992.95NoNo767
80R:R:P200 R:R:T123 15.68893.5NoNo097
81R:R:I125 R:R:R129 10.98066.26NoNo089
82R:R:L230 R:R:Y208 23.012917.58NoYes078
83R:R:I211 R:R:L230 21.26732.85NoNo087
84R:R:D128 R:R:R139 18.60352.38NoNo087
85R:R:Q143 R:R:R139 12.42193.5NoNo837
86R:R:D176 R:R:M174 10.13725.54YesNo044
87R:R:P185 R:R:Y177 27.619720.86NoYes035
88R:R:L255 R:R:P185 25.6983.28NoNo043
89R:R:I186 R:R:L255 21.93995.71YesNo034
90R:R:I186 R:R:T252 14.11953.04YesNo036
91R:R:L248 R:R:T252 10.11052.95NoNo1156
92R:R:I199 R:R:P200 13.09993.39NoNo059
93R:R:I199 R:R:L194 10.50022.85NoNo054
94R:R:H245 R:R:W241 25.31364.23NoYes088
95R:R:F197 R:R:H245 21.950619.23NoNo098
96R:R:F197 R:R:L242 20.50397.31NoNo095
97R:R:F237 R:R:L201 14.7447.31YesYes196
98R:R:I238 R:R:L201 15.01634.28NoYes056
99R:R:I211 R:R:V215 15.83841.54NoNo088
100R:R:S218 R:R:V215 11.94153.23NoNo058
101R:R:L302 R:R:L306 26.96858.3YesNo066
102R:R:L306 R:R:L311 19.814.15NoYes1463
103R:R:H303 R:R:L311 14.63736.43NoYes043
104R:R:H303 R:R:R314 12.83312.41NoNo041
105R:R:Q300 R:R:R314 11.01274.67NoNo051
106R:R:F240 R:R:L279 18.56624.87YesNo077
107R:R:L242 R:R:P243 29.08773.28NoNo059
108R:R:P243 R:R:T276 33.65183.5NoNo096
109R:R:T247 R:R:T276 31.12696.28NoNo056
110R:R:L273 R:R:T247 26.04494.42NoNo055
111R:R:L269 R:R:L273 23.4882.77NoNo055
112R:R:D251 R:R:L269 18.33138.14NoNo055
113R:R:D251 R:R:K254 15.74765.53NoNo053
114R:R:K254 R:R:S261 10.52157.65NoNo1333
115R:R:F116 R:R:H162 66.69517.92YesYes274
116R:R:L279 R:R:P243 18.0273.28NoNo079
117R:R:H283 R:R:W241 62.024213.75YesYes198
118R:R:H283 R:R:I122 39.88683.98YesYes198
119R:R:I122 R:R:Y291 31.24977.25YesYes189
120R:R:F111 R:R:F82 31.82626.43YesNo277
121R:R:L75 R:R:N287 39.44389.61YesYes199
122R:R:R129 R:R:Y208 10.01446.17NoYes098
123R:R:I238 R:R:L242 11.51442.85NoNo055
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 5WB1
Class A
SubFamily Other
Type Unclassified
SubType US28
Species Human cytomegalovirus (strain Towne)
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.51
Date 2018-06-13
D.O.I. 10.7554/eLife.35850
Net Summary
Imin 2.79
Number of Linked Nodes 273
Number of Links 317
Number of Hubs 43
Number of Links mediated by Hubs 145
Number of Communities 14
Number of Nodes involved in Communities 83
Number of Links involved in Communities 105
Path Summary
Number Of Nodes in MetaPath 124
Number Of Links MetaPath 123
Number of Shortest Paths 56067
Length Of Smallest Path 3
Average Path Length 14.1738
Length of Longest Path 32
Minimum Path Strength 1.35
Average Path Strength 5.93598
Maximum Path Strength 19.17
Minimum Path Correlation 0.7
Average Path Correlation 0.933478
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 50.5649
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.7731
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP69333
Sequence
>5WB1_Chain_R
PCVFTDVLN QSKPVTLFL YGVVFLFGS IGNFLVIFT ITWRRRIQC 
SGDVYFINL AAADLLFVC TLPLWMQYL LDHNSLASV PCTLLTACF 
YVAMFASLC FITEIALDR YYAIVYMRY RPVKQACLF SIFWWIFAV 
IIAIPHFMV VTKKDNQCM TDYDYLEVS YPIILNVEL MLGAFVIPL 
SVISYCYYR ISRIVAVSQ SRHKGRIVR VLIAVVLVF IIFWLPYHL 
TLFVDTLKL LKWISSSCE FERSLKRAL ILTESLAFC HCCLNPLLY 
VFVGTKFRQ ELHCLLAEF RLVPRG


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4XT1AOtherUnclassifiedUS28Human cytomegalovirus (strain ad169)Fractalkine--2.892015-03-0410.1126/science.aaa5026
4XT3AOtherUnclassifiedUS28Human cytomegalovirus (strain ad169)Fractalkine--3.82015-03-0410.1126/science.aaa5026
5WB1AOtherUnclassifiedUS28Human cytomegalovirus (strain towne)---3.512018-06-1310.7554/eLife.35850
5WB2AOtherUnclassifiedUS28Human cytomegalovirus (strain towne)CX3CL1.35--3.52018-06-1310.7554/eLife.35850
7RKFAOtherUnclassifiedUS28Human betaherpesvirus 5FractalkineGDPchim(NtGi1-G11)/&β;1/&γ;242022-01-2610.1126/sciadv.abl5442
7RKMAOtherUnclassifiedUS28Human betaherpesvirus 5Fractalkine-Gi1/&β;1/&γ;23.52022-01-2610.1126/sciadv.abl5442
7RKNAOtherUnclassifiedUS28Human betaherpesvirus 5Fractalkine-Gi1/&β;1/&γ;23.62022-01-2610.1126/sciadv.abl5442




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 5WB1.zip



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