Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:C27 4.084546
2R:R:E43 6.356545
3R:R:T75 6.0725426
4R:R:T76 6.0275428
5R:R:M83 5.9525409
6R:R:V90 6.58478
7R:R:P97 6.8825404
8R:R:Y119 4.27596
9R:R:I121 6.27406
10R:R:K125 12.3325416
11R:R:V127 6.5825406
12R:R:W130 5.49167605
13R:R:D138 7.792529
14R:R:R139 6.17429
15R:R:Y140 6.3425438
16R:R:Y149 7.804528
17R:R:V153 5.498527
18R:R:I172 5.86754105
19R:R:F173 5.246506
20R:R:F177 6.12495
21R:R:Y185 10.7067617
22R:R:H186 11.345412
23R:R:F190 7.2225403
24R:R:W192 9.145454
25R:R:W197 14.22415
26R:R:F203 6.0675405
27R:R:L211 5.746507
28R:R:Y212 5.42405
29R:R:Y223 6.25167639
30R:R:F227 5.5575437
31R:R:Y263 10.455427
32R:R:I270 5.1525488
33R:R:F274 8.435409
34R:R:Y281 8.685416
35R:R:Y284 12.018514
36R:R:F285 8.314515
37R:R:F300 7.41544
38R:R:W304 12.18544
39R:R:F311 5.44466
40R:R:N313 5.5775489
41R:R:Y317 6.096589
42R:R:F324 5.6508
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:E110 R:R:R24 13.495117.45NoNo576
2R:R:E191 R:R:R24 11.770718.61NoNo036
3R:R:C27 R:R:P28 14.14943.77YesNo467
4R:R:F300 R:R:P28 16.453110.11YesNo447
5R:R:F300 R:R:W304 44.022616.04YesYes444
6R:R:T303 R:R:W304 79.85967.28NoYes054
7R:R:T303 R:R:Y281 81.82934.99NoYes056
8R:R:H186 R:R:Y281 47.232817.42YesYes126
9R:R:H186 R:R:I121 67.30519.28YesYes026
10R:R:F117 R:R:I121 36.26645.02NoYes056
11R:R:F117 R:R:P97 34.72611.56NoYes054
12R:R:F190 R:R:P97 28.59878.67YesYes034
13R:R:F190 R:R:S100 26.71079.25YesNo034
14R:R:S100 R:R:T106 24.89093.2NoNo044
15R:R:E110 R:R:T106 23.05755.64NoNo074
16R:R:C27 R:R:E43 14.22444.56YesYes465
17R:R:E43 R:R:F300 23.50744.66YesYes454
18R:R:C27 R:R:D38 18.99544.67YesNo061
19R:R:D188 R:R:W197 14.047211.17NoYes145
20R:R:D188 R:R:Y185 14.319810.34NoYes147
21R:R:Y185 R:R:Y284 16.350917.87YesYes174
22R:R:L298 R:R:Y284 13.40657.03NoYes044
23R:R:L298 R:R:N295 11.2056.87NoNo043
24R:R:I307 R:R:W304 21.646716.44NoYes064
25R:R:I307 R:R:L50 19.29532.85NoNo066
26R:R:F311 R:R:L50 14.51064.87YesNo666
27R:R:I121 R:R:V90 49.1486.14YesYes068
28R:R:I54 R:R:V90 10.53036.14NoYes778
29R:R:G91 R:R:I54 15.18547.05NoNo067
30R:R:S310 R:R:V90 37.75228.08NoYes798
31R:R:D87 R:R:S310 43.96138.83NoNo099
32R:R:G91 R:R:I55 13.31113.53NoNo066
33R:R:D87 R:R:N313 44.07034.04NoYes099
34R:R:N313 R:R:Y317 54.58026.98YesYes899
35R:R:I80 R:R:Y317 32.99487.25NoYes089
36R:R:F65 R:R:I80 30.70473.77NoNo078
37R:R:F65 R:R:Q81 14.49721.08NoNo076
38R:R:Q81 R:R:Y85 12.12515.64NoNo066
39R:R:F324 R:R:Y317 19.24075.16YesYes089
40R:R:F65 R:R:S77 14.4973.96NoNo078
41R:R:L71 R:R:S77 12.12511.5NoNo088
42R:R:H186 R:R:K125 12.881713.1YesYes126
43R:R:K125 R:R:Q278 61.259523.05YesNo168
44R:R:F274 R:R:Q278 62.29559.37YesNo098
45R:R:F274 R:R:L132 1007.31YesNo098
46R:R:L132 R:R:T271 75.722511.79NoNo088
47R:R:T271 R:R:Y223 74.46844.99NoYes089
48R:R:I135 R:R:Y223 45.69253.63NoYes099
49R:R:F79 R:R:I135 44.1933.77NoNo089
50R:R:F79 R:R:L158 41.09193.65NoNo087
51R:R:L158 R:R:T75 38.02484.42NoYes076
52R:R:D138 R:R:T75 13.808610.12YesYes296
53R:R:T75 R:R:V153 17.44144.76YesYes267
54R:R:H186 R:R:S122 42.78225.58YesNo025
55R:R:F173 R:R:S122 41.99167.93YesNo065
56R:R:F173 R:R:I172 41.41225.02YesYes065
57R:R:I172 R:R:Y168 10.08048.46YesNo1054
58R:R:I165 R:R:W130 20.23585.87NoYes065
59R:R:I165 R:R:V127 14.55154.61NoYes066
60R:R:V127 R:R:W166 15.185413.48YesNo069
61R:R:T82 R:R:W166 10.1354.85NoNo099
62R:R:I172 R:R:L211 36.67535.71YesYes057
63R:R:L211 R:R:W130 28.71464.56YesYes075
64R:R:L211 R:R:S126 15.26046.01YesNo076
65R:R:S126 R:R:S169 13.02486.52NoNo068
66R:R:S169 R:R:V127 10.8374.85NoYes086
67R:R:M83 R:R:N313 61.36864.21YesYes099
68R:R:F173 R:R:V123 24.33893.93YesNo065
69R:R:V123 R:R:Y119 22.34196.31NoYes056
70R:R:F173 R:R:P183 19.90194.33YesNo064
71R:R:F274 R:R:M129 57.33374.98YesNo097
72R:R:T222 R:R:Y223 18.1234.99NoYes379
73R:R:T222 R:R:Y140 16.43273.75NoYes378
74R:R:F227 R:R:Y223 10.79615.16YesYes379
75R:R:L152 R:R:V153 12.87491.49NoYes047
76R:R:L152 R:R:R157 11.07551.21NoNo045
77R:R:F285 R:R:Y185 24.052612.38YesYes157
78R:R:F285 R:R:I207 21.29233.77YesNo056
79R:R:L174 R:R:Y119 12.71132.34NoYes046
80R:R:F203 R:R:P183 10.33945.78YesNo054
81R:R:I207 R:R:Y212 19.55434.84NoYes065
82R:R:I270 R:R:N313 32.70177.08YesYes889
83R:R:I270 R:R:V266 26.12463.07YesNo088
84R:R:S320 R:R:V266 23.80733.23NoNo078
85R:R:R262 R:R:S320 21.58532.64NoNo087
86R:R:R262 R:R:R325 14.51062.13NoNo089
87R:R:D38 R:R:S35 14.26532.94NoNo015
88R:R:Y185 R:R:Y281 39.78333.97YesYes176
89R:R:K125 R:R:Y281 49.36618.36YesYes166
90R:R:L132 R:R:M83 63.59737.07NoYes089
91R:R:L211 R:R:M129 53.95314.24YesNo077
92R:R:L211 R:R:Y212 19.30898.21YesYes075
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 6LI1
Class A
SubFamily Orphan
Type Orphan
SubType GPR52
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.9
Date 2020-02-26
D.O.I. doi.org/10.1038/s41586-020-2019-0
Net Summary
Imin 3.77
Number of Linked Nodes 269
Number of Links 299
Number of Hubs 42
Number of Links mediated by Hubs 155
Number of Communities 10
Number of Nodes involved in Communities 59
Number of Links involved in Communities 76
Path Summary
Number Of Nodes in MetaPath 93
Number Of Links MetaPath 92
Number of Shortest Paths 42534
Length Of Smallest Path 3
Average Path Length 12.8101
Length of Longest Path 31
Minimum Path Strength 1.35
Average Path Strength 6.96385
Maximum Path Strength 20.745
Minimum Path Correlation 0.7
Average Path Correlation 0.934354
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 55.5868
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.1648
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• FMN binding   • binding   • nucleoside phosphate binding   • ion binding   • anion binding   • nucleotide binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • electron transfer activity   • G protein-coupled photoreceptor activity   • molecular transducer activity   • photoreceptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • response to stimulus   • response to chemical   • response to xenobiotic stimulus   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • signaling   • biological regulation   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell communication   • behavior   • multicellular organismal process
Gene OntologyBiological Process• response to stimulus   • response to chemical   • response to xenobiotic stimulus   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • signaling   • biological regulation   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell communication   • behavior   • multicellular organismal process   • locomotory behavior   • response to light stimulus   • cellular response to light stimulus   • response to radiation   • response to abiotic stimulus   • cellular response to radiation   • cellular response to abiotic stimulus   • cellular response to environmental stimulus   • phototransduction   • detection of light stimulus   • detection of external stimulus   • response to external stimulus   • detection of abiotic stimulus   • detection of stimulus   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane
Gene OntologyCellular Component
SCOP2Domain Identifier• Flavoproteins
SCOP2Family Identifier• Flavoproteins
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9Y2T5
Sequence
>6LI1_Chain_R
RHSCPLGFG HYSVVDVCI FETVVIVLL TFLIIAGNL TVIFVFHCA 
PLLHHYTTS YFIQTMAYA DLFVGVSCL VPTLSLLHY STGVHESLT 
CQVFGYIIS VLKSVSMWC LACISVDRY LAITKPLSY NQLVTPCRL 
RICIILIWI YSCLIFLPS FFGWGKPGY HGDIFEWCA TSWLTSAYF 
TGFIVCLLY APAAFVVCF TYFHIFKIC RQHTKERRY LMVLFRITS 
VFYMLQLPY IIYFLLESS RVLDNPTLS FLTTWLAIS NSFCNPVIY 
ALSDSTFRL GLRRLSETM CTSCMC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8HMPAOrphanOrphanGPR52Homo sapiens-C17Gs/β1/γ22.772023-06-21doi.org/10.1002/mco2.260
8HMP (No Gprot) AOrphanOrphanGPR52Homo sapiens-C172.772023-06-21doi.org/10.1002/mco2.260
6LI0AOrphanOrphanGPR52Homo sapiens-C17-2.22020-02-26doi.org/10.1038/s41586-020-2019-0
6LI1AOrphanOrphanGPR52Homo sapiens---2.92020-02-26doi.org/10.1038/s41586-020-2019-0
6LI2AOrphanOrphanGPR52Homo sapiens---2.82020-02-26doi.org/10.1038/s41586-020-2019-0
6LI3AOrphanOrphanGPR52Homo sapiens--Gs/β1/γ23.322020-02-26doi.org/10.1038/s41586-020-2019-0
6LI3 (No Gprot) AOrphanOrphanGPR52Homo sapiens--3.322020-02-26doi.org/10.1038/s41586-020-2019-0




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 6LI1.zip



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