Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:C27 4.084546
2R:R:L29 4.96445
3R:R:E43 6.40167645
4R:R:T75 6.0725416
5R:R:T76 6.0275418
6R:R:M83 5.9525409
7R:R:V90 5.694568
8R:R:P97 6.8825404
9R:R:E110 13.805457
10R:R:Y119 4.27586
11R:R:I121 6.27406
12R:R:V127 6.5825406
13R:R:W130 5.49167605
14R:R:D138 7.792519
15R:R:R139 6.17419
16R:R:Y140 6.03528
17R:R:K145 6.52426
18R:R:Y149 7.804518
19R:R:V153 5.498517
20R:R:I172 5.8675495
21R:R:F173 5.246506
22R:R:F177 6.12485
23R:R:Y185 10.8933637
24R:R:F190 7.178503
25R:R:E191 4.87403
26R:R:W197 14.404505
27R:R:F203 6.0675405
28R:R:L211 5.746507
29R:R:Y212 5.42405
30R:R:Y223 6.39429729
31R:R:Y263 10.455417
32R:R:I270 5.1525478
33R:R:F274 8.435409
34R:R:Y284 9.1534
35R:R:F285 8.314535
36R:R:E288 9.526533
37R:R:F300 6.98667644
38R:R:W304 12.18544
39R:R:S310 7.6975469
40R:R:F311 4.368506
41R:R:N313 5.5775479
42R:R:Y317 6.096579
43R:R:F324 5.6508
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:E110 R:R:E191 12.25923.81YesYes073
2R:R:C27 R:R:P28 14.37543.77YesNo467
3R:R:F300 R:R:P28 16.787210.11YesNo447
4R:R:F300 R:R:W304 50.356216.04YesYes444
5R:R:T303 R:R:W304 70.51567.28NoYes054
6R:R:T303 R:R:Y281 72.70044.99NoNo056
7R:R:H186 R:R:Y281 68.531317.42NoNo026
8R:R:H186 R:R:I121 67.73449.28NoYes026
9R:R:F117 R:R:I121 45.22675.02NoYes056
10R:R:F117 R:R:P97 43.785911.56NoYes054
11R:R:F190 R:R:P97 38.29238.67YesYes034
12R:R:E110 R:R:F190 16.47057YesYes073
13R:R:C27 R:R:E43 14.90844.56YesYes465
14R:R:E43 R:R:F300 23.9014.66YesYes454
15R:R:C27 R:R:D38 19.58414.67YesNo061
16R:R:Y185 R:R:Y281 27.15183.97YesNo076
17R:R:Y185 R:R:Y284 10.164117.87YesYes374
18R:R:I121 R:R:V90 81.33946.14YesYes068
19R:R:F311 R:R:I54 13.71582.51YesNo067
20R:R:S310 R:R:V90 76.42628.08YesYes698
21R:R:D87 R:R:S310 58.11398.83NoYes099
22R:R:G91 R:R:V90 14.71323.68NoYes068
23R:R:G91 R:R:I55 12.88723.53NoNo066
24R:R:D87 R:R:N313 57.10064.04NoYes099
25R:R:N313 R:R:Y317 35.55866.98YesYes799
26R:R:I80 R:R:Y317 21.95377.25NoYes089
27R:R:F65 R:R:I80 20.43913.77NoNo078
28R:R:F324 R:R:Y317 12.82925.16YesYes089
29R:R:M83 R:R:N313 54.16124.21YesYes099
30R:R:L132 R:R:M83 54.14537.07NoYes089
31R:R:L132 R:R:T271 10011.79NoNo088
32R:R:T271 R:R:Y223 98.13714.99NoYes089
33R:R:I135 R:R:Y223 61.20113.63NoYes099
34R:R:F79 R:R:I135 59.15883.77NoNo089
35R:R:F79 R:R:L158 55.00553.65NoNo087
36R:R:L158 R:R:T75 50.92094.42NoYes076
37R:R:D138 R:R:T75 17.647410.12YesYes196
38R:R:K125 R:R:S310 30.76684.59NoYes069
39R:R:K125 R:R:Q278 30.471310.85NoNo068
40R:R:F274 R:R:Q278 30.91469.37YesNo098
41R:R:F274 R:R:L132 87.17087.31YesNo098
42R:R:T75 R:R:V153 22.31784.76YesYes167
43R:R:H186 R:R:S122 42.70945.58NoNo025
44R:R:F173 R:R:S122 42.73057.93YesNo065
45R:R:F173 R:R:I172 51.99755.02YesYes065
46R:R:I165 R:R:W130 16.14865.87NoYes065
47R:R:I165 R:R:V127 11.61014.61NoYes066
48R:R:V127 R:R:W166 11.900413.48YesNo069
49R:R:I172 R:R:L211 47.14235.71YesYes057
50R:R:L211 R:R:W130 21.99594.56YesYes075
51R:R:L211 R:R:S126 11.66826.01YesNo076
52R:R:F190 R:R:T113 12.59172.59YesNo035
53R:R:H109 R:R:T113 10.82388.21NoNo065
54R:R:Q115 R:R:W197 16.8984.38NoYes065
55R:R:F177 R:R:Q115 19.388911.71YesNo056
56R:R:F177 R:R:Y119 12.67096.19YesYes856
57R:R:V123 R:R:Y119 23.18866.31NoYes056
58R:R:F177 R:R:S176 12.43343.96YesNo855
59R:R:F274 R:R:M129 71.88244.98YesNo097
60R:R:L211 R:R:M129 72.74794.24YesNo077
61R:R:T222 R:R:Y223 22.89834.99NoYes279
62R:R:T222 R:R:Y140 20.70293.75NoYes278
63R:R:L152 R:R:V153 16.1751.49NoYes047
64R:R:L152 R:R:R157 13.89521.21NoNo045
65R:R:R157 R:R:T154 11.60485.17NoNo058
66R:R:P183 R:R:S176 14.07997.13NoNo045
67R:R:L174 R:R:Y119 10.41222.34NoYes046
68R:R:F285 R:R:Y185 27.922312.38YesYes357
69R:R:I207 R:R:Y212 29.73774.84NoYes065
70R:R:I270 R:R:N313 24.15967.08YesYes789
71R:R:I270 R:R:V266 20.44963.07YesNo088
72R:R:S320 R:R:V266 18.9353.23NoNo078
73R:R:R262 R:R:S320 17.46792.64NoNo087
74R:R:R262 R:R:R325 12.82922.13NoNo089
75R:R:D38 R:R:S35 14.70262.94NoNo015
76R:R:F173 R:R:V123 24.56073.93YesNo065
77R:R:F173 R:R:P183 21.45234.33YesNo064
78R:R:F285 R:R:I207 30.81433.77YesNo056
79R:R:L211 R:R:Y212 29.8018.21YesYes075
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 6LI1
Class A
SubFamily Orphan
Type A orphans
SubType GPR52
Species Homo sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.9
Date 2020-02-26
D.O.I. 10.1038/s41586-020-2019-0
Net Summary
Imin 3.77
Number of Linked Nodes 275
Number of Links 308
Number of Hubs 43
Number of Links mediated by Hubs 166
Number of Communities 9
Number of Nodes involved in Communities 53
Number of Links involved in Communities 71
Path Summary
Number Of Nodes in MetaPath 80
Number Of Links MetaPath 79
Number of Shortest Paths 51760
Length Of Smallest Path 3
Average Path Length 13.569
Length of Longest Path 30
Minimum Path Strength 1.35
Average Path Strength 6.57159
Maximum Path Strength 22.7
Minimum Path Correlation 0.7
Average Path Correlation 0.93337
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 52.783
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.5156
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9Y2T5
Sequence
>6LI1_Chain_R
RHSCPLGFG HYSVVDVCI FETVVIVLL TFLIIAGNL TVIFVFHCA 
PLLHHYTTS YFIQTMAYA DLFVGVSCL VPTLSLLHY STGVHESLT 
CQVFGYIIS VLKSVSMWC LACISVDRY LAITKPLSY NQLVTPCRL 
RICIILIWI YSCLIFLPS FFGWGKPGY HGDIFEWCA TSWLTSAYF 
TGFIVCLLY APAAFVVCF TYFHIFKIC RQHTKERRY LMVLFRITS 
VFYMLQLPY IIYFLLESS RVLDNPTLS FLTTWLAIS NSFCNPVIY 
ALSDSTFRL GLRRLSETM CTSCMC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6LI0AOrphanA orphansGPR52Homo sapiens-GTPL9804-2.22020-02-2610.1038/s41586-020-2019-0
6LI1AOrphanA orphansGPR52Homo sapiens---2.92020-02-2610.1038/s41586-020-2019-0
6LI2AOrphanA orphansGPR52Homo sapiens---2.82020-02-2610.1038/s41586-020-2019-0
6LI3AOrphanA orphansGPR52Homo sapiens--Gs/&β;1/&γ;23.322020-02-2610.1038/s41586-020-2019-0
8HMPAOrphanA orphansGPR52Homo sapiens-PubChem 69921479Gs/&β;1/&γ;22.772023-06-2110.1002/mco2.260




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 6LI1.zip



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