Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y34 6.81513
2R:R:E43 8.562515
3R:R:I47 7.3615
4R:R:F65 5.85167627
5R:R:H66 5.415623
6R:R:F79 6.2775408
7R:R:M83 5.9175409
8R:R:D87 7.7175409
9R:R:P97 6.5675404
10R:R:T98 5.4225416
11R:R:L101 7.6414
12R:R:C114 5.385469
13R:R:I121 7.79406
14R:R:M129 6.632537
15R:R:W130 4.46571735
16R:R:R139 5.13459
17R:R:Y140 7.296548
18R:R:K145 2.99406
19R:R:Y149 8.216558
20R:R:Y185 8.58125817
21R:R:H186 8.5825402
22R:R:I189 4.74414
23R:R:F190 6.02333603
24R:R:W192 9.575404
25R:R:W197 8.2225485
26R:R:T199 7.085613
27R:R:F203 6.51575
28R:R:I207 6.41406
29R:R:Y212 5.165405
30R:R:Y223 6.7125449
31R:R:H225 8.6975445
32R:R:Y263 10.666527
33R:R:F274 10.388539
34R:R:Y281 6.504516
35R:R:Y284 8.965414
36R:R:F285 9.67415
37R:R:E288 8.704513
38R:R:F300 6.18167614
39R:R:W304 14.0925414
40R:R:N309 10.8325439
41R:R:S310 6.535409
42R:R:Y317 6.25429
43R:R:F324 5.15667628
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:E43 R:R:F300 34.10077YesYes154
2R:R:E43 R:R:P28 14.34353.14YesNo057
3R:R:P28 R:R:P296 12.31133.9NoNo072
4R:R:N295 R:R:P296 10.27334.89NoNo032
5R:R:E43 R:R:Y34 14.182810.1YesYes153
6R:R:F190 R:R:P97 23.27064.33YesYes034
7R:R:I47 R:R:P97 28.68135.08YesYes054
8R:R:I47 R:R:T98 10.71824.56YesYes156
9R:R:F300 R:R:W304 26.175415.03YesYes144
10R:R:F117 R:R:P97 50.226811.56NoYes054
11R:R:F117 R:R:I121 51.874411.3NoYes056
12R:R:I121 R:R:V90 99.09874.61YesNo068
13R:R:S310 R:R:V90 1008.08YesNo098
14R:R:D87 R:R:S310 87.46488.83YesYes099
15R:R:D87 R:R:N58 89.95926.73YesNo099
16R:R:N58 R:R:P314 85.398113.03NoNo099
17R:R:P314 R:R:V61 83.35733.53NoNo099
18R:R:F65 R:R:V61 43.17413.93YesNo279
19R:R:H66 R:R:V61 39.48854.15YesNo239
20R:R:F65 R:R:Y317 35.67377.22YesYes279
21R:R:H66 R:R:Y317 35.28334.36YesYes239
22R:R:Y263 R:R:Y317 67.29154.96YesYes279
23R:R:T76 R:R:Y263 36.70426.24NoYes087
24R:R:I135 R:R:T76 21.51967.6NoNo098
25R:R:F79 R:R:I135 38.886.28YesNo089
26R:R:F79 R:R:L158 27.36094.87YesNo087
27R:R:L158 R:R:Y78 23.66097.03NoNo074
28R:R:Y74 R:R:Y78 15.7963.97NoNo044
29R:R:L267 R:R:Y263 23.224610.55NoYes087
30R:R:I135 R:R:L267 21.30435.71NoNo098
31R:R:R139 R:R:T76 13.74656.47YesNo098
32R:R:D87 R:R:S128 24.59385.89YesNo099
33R:R:M83 R:R:S128 24.11166.13YesNo099
34R:R:D87 R:R:N313 62.9839.42YesNo099
35R:R:M83 R:R:N313 24.60535.61YesNo099
36R:R:L132 R:R:M83 43.18567.07NoYes089
37R:R:F274 R:R:N313 39.660710.87YesNo099
38R:R:F274 R:R:L132 43.03637.31YesNo098
39R:R:K125 R:R:S310 23.64094.59NoYes069
40R:R:K125 R:R:N309 23.30218.39NoYes069
41R:R:F274 R:R:N309 19.869124.17YesYes399
42R:R:C114 R:R:F190 11.33538.38YesYes093
43R:R:H186 R:R:I121 53.171810.61YesYes026
44R:R:H186 R:R:S122 27.96665.58YesNo025
45R:R:F173 R:R:S122 27.668111.89NoNo065
46R:R:F173 R:R:I207 27.82317.54NoYes066
47R:R:F274 R:R:M129 25.70763.73YesYes397
48R:R:I207 R:R:Y212 27.81453.63YesYes065
49R:R:M129 R:R:Y212 28.91965.99YesYes075
50R:R:L132 R:R:T271 81.8565.9NoNo088
51R:R:T271 R:R:Y223 86.57217.49NoYes089
52R:R:T222 R:R:Y223 62.0964.99NoYes479
53R:R:T222 R:R:Y140 59.14817.49NoYes478
54R:R:T144 R:R:Y140 37.631313.73NoYes068
55R:R:K145 R:R:T144 19.01093YesNo066
56R:R:I229 R:R:T144 15.66681.52NoNo066
57R:R:F203 R:R:I207 14.86610.05YesYes056
58R:R:H186 R:R:Y281 41.259514.16YesYes026
59R:R:I307 R:R:W304 26.255815.27NoYes064
60R:R:T271 R:R:V219 10.20154.76NoNo085
61R:R:F268 R:R:Y223 15.66979.28NoYes059
62R:R:L277 R:R:N309 13.68915.49NoYes089
63R:R:P155 R:R:Y74 11.85491.39NoNo034
64R:R:F300 R:R:I47 17.23693.77YesYes145
65R:R:H186 R:R:I307 27.02223.98YesNo026
66R:R:T199 R:R:Y185 10.20153.75YesYes137
67R:R:Y185 R:R:Y281 32.46176.95YesYes176
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 6LI2
Class A
SubFamily Orphan
Type Orphan
SubType GPR52
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.8
Date 2020-02-26
D.O.I. 10.1038/s41586-020-2019-0
Net Summary
Imin 3.53
Number of Linked Nodes 269
Number of Links 307
Number of Hubs 43
Number of Links mediated by Hubs 164
Number of Communities 8
Number of Nodes involved in Communities 64
Number of Links involved in Communities 87
Path Summary
Number Of Nodes in MetaPath 68
Number Of Links MetaPath 67
Number of Shortest Paths 78024
Length Of Smallest Path 3
Average Path Length 14.8337
Length of Longest Path 30
Minimum Path Strength 1.51
Average Path Strength 7.12804
Maximum Path Strength 17.52
Minimum Path Correlation 0.7
Average Path Correlation 0.941605
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 52.7624
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.5411
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• response to stimulus   • response to chemical   • response to xenobiotic stimulus   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • signaling   • biological regulation   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell communication   • behavior   • multicellular organismal process   • locomotory behavior   • response to light stimulus   • cellular response to light stimulus   • response to radiation   • response to abiotic stimulus   • cellular response to radiation   • cellular response to abiotic stimulus   • cellular response to environmental stimulus   • phototransduction   • detection of light stimulus   • detection of external stimulus   • response to external stimulus   • detection of abiotic stimulus   • detection of stimulus   • alkane metabolic process   • catabolic process   • hydrocarbon catabolic process   • metabolic process   • alkane catabolic process   • hydrocarbon metabolic process   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane
Gene OntologyCellular Component
SCOP2Domain Identifier• Rubredoxin-like
SCOP2Family Identifier• Rubredoxin-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9Y2T5
Sequence
>6LI2_Chain_R
ERHSCPLGF GHYSVVDVC IFETVVIVL LTFLIIAGN LTVIFVFHC 
LHHYTTSYF IQTMAYADL FVGVSCLVP TLSLLHYST GVHESLTCQ 
VFGYIISVL KSVSMWCLA CISVDRYLA ITKPLSYNQ LVTPCRLRI 
CIILIWIYS CLIFLPSFF GWGKPGYHG DIFEWCATS WLTSAYFTG 
FIVCLLYAP AAFVVCFTY FHIFKICRQ HTKYLMVLF RITSVFYML 
QLPYIIYFL LESSRVLDN PTLSFLTTW LAISNSFCN PVIYALSDS 
TFRLGLRRL SETMCTSCM


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8HMPAOrphanOrphanGPR52Homo sapiens-C17Gs/β1/γ22.772023-06-2110.1002/mco2.260
8HMP (No Gprot) AOrphanOrphanGPR52Homo sapiens-C172.772023-06-2110.1002/mco2.260
6LI2AOrphanOrphanGPR52Homo sapiens---2.82020-02-2610.1038/s41586-020-2019-0
6LI1AOrphanOrphanGPR52Homo sapiens---2.92020-02-2610.1038/s41586-020-2019-0
6LI0AOrphanOrphanGPR52Homo sapiens-C17-2.22020-02-2610.1038/s41586-020-2019-0
6LI3AOrphanOrphanGPR52Homo sapiens--Gs/β1/γ23.322020-02-2610.1038/s41586-020-2019-0
6LI3 (No Gprot) AOrphanOrphanGPR52Homo sapiens--3.322020-02-2610.1038/s41586-020-2019-0




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Download 6LI2.zip



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