Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y34 7.605403
2R:R:E43 8.562505
3R:R:I47 7.3615
4R:R:F65 5.85167627
5R:R:H66 5.415623
6R:R:F79 6.2775408
7R:R:M83 5.9175409
8R:R:D87 7.7175409
9R:R:P97 6.5675404
10R:R:T98 5.4225416
11R:R:L101 7.6414
12R:R:C114 5.385469
13R:R:I121 7.79406
14R:R:M129 7.3575437
15R:R:W130 4.46571735
16R:R:R139 5.13459
17R:R:Y140 8.2125448
18R:R:Y149 8.216558
19R:R:Y185 8.58125817
20R:R:H186 8.5825402
21R:R:I189 4.74414
22R:R:F190 6.02333603
23R:R:W192 9.575404
24R:R:W197 8.2225485
25R:R:T199 7.085613
26R:R:F203 6.51575
27R:R:Y223 6.7125449
28R:R:H225 8.6975445
29R:R:Y263 10.666527
30R:R:F274 12.0525439
31R:R:Y281 6.504516
32R:R:Y284 8.965414
33R:R:F285 9.67415
34R:R:E288 8.704513
35R:R:F300 6.688514
36R:R:W304 14.0925414
37R:R:N309 10.8325439
38R:R:S310 6.535409
39R:R:Y317 6.25429
40R:R:F324 5.15667628
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:E43 R:R:F300 35.3877YesYes054
2R:R:E43 R:R:P28 12.09843.14YesNo057
3R:R:P28 R:R:P296 10.38513.9NoNo072
4R:R:E43 R:R:Y34 15.347410.1YesYes053
5R:R:F190 R:R:P97 20.41524.33YesYes034
6R:R:I47 R:R:P97 28.13265.08YesYes054
7R:R:F300 R:R:W304 22.087315.03YesYes144
8R:R:F117 R:R:P97 46.929711.56NoYes054
9R:R:F117 R:R:I121 48.334311.3NoYes056
10R:R:I121 R:R:V90 99.3984.61YesNo068
11R:R:S310 R:R:V90 1008.08YesNo098
12R:R:D87 R:R:S310 85.13368.83YesYes099
13R:R:D87 R:R:N58 80.14826.73YesNo099
14R:R:N58 R:R:P314 76.096513.03NoNo099
15R:R:P314 R:R:V61 74.28293.53NoNo099
16R:R:F65 R:R:V61 38.47663.93YesNo279
17R:R:H66 R:R:V61 35.18894.15YesNo239
18R:R:F65 R:R:Y317 31.79587.22YesYes279
19R:R:H66 R:R:Y317 31.4464.36YesYes239
20R:R:Y263 R:R:Y317 59.97744.96YesYes279
21R:R:T76 R:R:Y263 32.71946.24NoYes087
22R:R:I135 R:R:T76 19.1837.6NoNo098
23R:R:F79 R:R:I135 34.6596.28YesNo089
24R:R:F79 R:R:L158 24.38714.87YesNo087
25R:R:L158 R:R:Y78 21.08157.03NoNo074
26R:R:Y74 R:R:Y78 14.0743.97NoNo044
27R:R:L267 R:R:Y263 20.700710.55NoYes087
28R:R:I135 R:R:L267 18.995.71NoNo098
29R:R:R139 R:R:T76 12.25796.47YesNo098
30R:R:D87 R:R:S128 22.95685.89YesNo099
31R:R:M83 R:R:S128 22.45526.13YesNo099
32R:R:D87 R:R:N313 51.39569.42YesNo099
33R:R:M83 R:R:N313 22.83335.61YesNo099
34R:R:L132 R:R:M83 40.23877.07NoYes089
35R:R:F274 R:R:N313 29.349410.87YesNo099
36R:R:F274 R:R:L132 32.82237.31YesNo098
37R:R:K125 R:R:S310 23.12664.59NoYes069
38R:R:K125 R:R:N309 22.60958.39NoYes069
39R:R:F274 R:R:N309 16.09624.17YesYes399
40R:R:C114 R:R:F190 10.0798.38YesYes093
41R:R:H186 R:R:I121 55.447210.61YesYes026
42R:R:H186 R:R:S122 18.84345.58YesNo025
43R:R:F173 R:R:S122 18.092211.89NoNo065
44R:R:F173 R:R:I207 15.26777.54NoNo066
45R:R:M129 R:R:Q278 10.71445.44YesNo378
46R:R:L132 R:R:T271 69.57275.9NoNo088
47R:R:T271 R:R:Y223 67.88777.49NoYes089
48R:R:T222 R:R:Y223 41.61244.99NoYes479
49R:R:T222 R:R:Y140 39.32047.49NoYes478
50R:R:T144 R:R:Y140 27.124213.73NoYes068
51R:R:I229 R:R:T144 12.31961.52NoNo066
52R:R:K145 R:R:T144 12.47410.51NoNo066
53R:R:F203 R:R:I207 11.594210.05YesNo056
54R:R:H186 R:R:Y281 31.415114.16YesYes026
55R:R:I307 R:R:W304 21.59615.27NoYes064
56R:R:F268 R:R:Y223 17.42089.28NoYes059
57R:R:F227 R:R:F268 12.466211.79NoNo075
58R:R:L277 R:R:N309 11.21345.49NoYes089
59R:R:P155 R:R:Y74 10.56261.39NoNo034
60R:R:F300 R:R:I47 17.51093.77YesYes145
61R:R:H186 R:R:I307 22.13623.98YesNo026
62R:R:A215 R:R:W130 10.14073.89NoYes355
63R:R:Y185 R:R:Y281 24.8096.95YesYes176
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 6LI2
Class A
SubFamily Orphan
Type A orphans
SubType GPR52
Species Homo sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.8
Date 2020-02-26
D.O.I. 10.1038/s41586-020-2019-0
Net Summary
Imin 3.75
Number of Linked Nodes 270
Number of Links 302
Number of Hubs 40
Number of Links mediated by Hubs 151
Number of Communities 8
Number of Nodes involved in Communities 56
Number of Links involved in Communities 74
Path Summary
Number Of Nodes in MetaPath 64
Number Of Links MetaPath 63
Number of Shortest Paths 73567
Length Of Smallest Path 3
Average Path Length 15.0154
Length of Longest Path 30
Minimum Path Strength 1.51
Average Path Strength 7.18396
Maximum Path Strength 17.52
Minimum Path Correlation 0.7
Average Path Correlation 0.941636
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 52.9848
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.24
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9Y2T5
Sequence
>6LI2_Chain_R
ERHSCPLGF GHYSVVDVC IFETVVIVL LTFLIIAGN LTVIFVFHC 
LHHYTTSYF IQTMAYADL FVGVSCLVP TLSLLHYST GVHESLTCQ 
VFGYIISVL KSVSMWCLA CISVDRYLA ITKPLSYNQ LVTPCRLRI 
CIILIWIYS CLIFLPSFF GWGKPGYHG DIFEWCATS WLTSAYFTG 
FIVCLLYAP AAFVVCFTY FHIFKICRQ HTKYLMVLF RITSVFYML 
QLPYIIYFL LESSRVLDN PTLSFLTTW LAISNSFCN PVIYALSDS 
TFRLGLRRL SETMCTSCM


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6LI0AOrphanA orphansGPR52Homo sapiens-GTPL9804-2.22020-02-2610.1038/s41586-020-2019-0
6LI1AOrphanA orphansGPR52Homo sapiens---2.92020-02-2610.1038/s41586-020-2019-0
6LI2AOrphanA orphansGPR52Homo sapiens---2.82020-02-2610.1038/s41586-020-2019-0
6LI3AOrphanA orphansGPR52Homo sapiens--Gs/&β;1/&γ;23.322020-02-2610.1038/s41586-020-2019-0
8HMPAOrphanA orphansGPR52Homo sapiens-PubChem 69921479Gs/&β;1/&γ;22.772023-06-2110.1002/mco2.260




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 6LI2.zip



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