Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:T44 2.6825406
2R:R:Y78 3.1225404
3R:R:F79 5.8325408
4R:R:T98 3.07506
5R:R:F117 5.2425405
6R:R:Y149 8.88408
7R:R:F173 5.084506
8R:R:K182 9.852513
9R:R:Y185 8.138517
10R:R:H186 5.3625402
11R:R:F190 5.684533
12R:R:F203 4.322505
13R:R:Y212 5.64833625
14R:R:Y223 5.60714769
15R:R:F274 5.89409
16R:R:W278 7.8775428
17R:R:Y281 8.298526
18R:R:F285 8.615405
19R:R:W304 5.47667604
20R:R:N309 5.285409
21R:R:F311 5.572546
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F300 R:R:W304 13.218913.03NoYes044
2R:R:I47 R:R:W304 22.21647.05NoYes054
3R:R:I47 R:R:T98 20.44696.08NoYes056
4R:R:I307 R:R:W304 60.10353.52NoYes064
5R:R:H186 R:R:I307 72.08523.98YesNo026
6R:R:H186 R:R:Y281 75.21938.71YesYes026
7R:R:W278 R:R:Y281 87.4117.72YesYes286
8R:R:F274 R:R:W278 1005.01YesYes098
9R:R:F274 R:R:N313 46.47973.62YesNo099
10R:R:N313 R:R:P314 43.91543.26NoNo099
11R:R:D87 R:R:P314 41.29113.22NoNo099
12R:R:D87 R:R:F311 35.34533.58NoYes496
13R:R:F311 R:R:I54 18.137511.3YesNo067
14R:R:I54 R:R:S308 16.56291.55NoNo076
15R:R:F274 R:R:T271 90.56765.19YesNo098
16R:R:T271 R:R:Y223 89.472911.24NoYes089
17R:R:R139 R:R:Y223 76.08165.14NoYes099
18R:R:I135 R:R:R139 72.57253.76NoNo099
19R:R:F79 R:R:I135 70.72815.02YesNo089
20R:R:F79 R:R:L158 42.40083.65YesNo087
21R:R:L158 R:R:Y78 23.84343.52NoYes074
22R:R:Q81 R:R:Y78 40.09152.25NoYes064
23R:R:Q81 R:R:Y85 11.749311.27NoNo066
24R:R:F79 R:R:I162 26.11536.28YesNo088
25R:R:I162 R:R:Y78 22.40383.63NoYes084
26R:R:F311 R:R:V315 13.36883.93YesNo067
27R:R:S318 R:R:V315 11.74931.62NoNo077
28R:R:F324 R:R:S318 10.114710.57NoNo087
29R:R:F65 R:R:Q81 26.107814.05NoNo076
30R:R:F65 R:R:L71 17.44776.09NoNo578
31R:R:L70 R:R:L71 14.6514.15NoNo058
32R:R:L158 R:R:V153 21.40664.47NoNo077
33R:R:V153 R:R:Y149 19.974512.62NoYes078
34R:R:L141 R:R:Y149 12.5897.03NoYes058
35R:R:L141 R:R:L152 11.0671.38NoNo054
36R:R:I307 R:R:K125 14.99594.36NoNo066
37R:R:G187 R:R:W304 16.79544.22NoYes044
38R:R:F117 R:R:G187 14.99593.01YesNo054
39R:R:A194 R:R:F190 10.18971.39NoYes043
40R:R:A194 R:R:D188 12.18414.63NoNo044
41R:R:D188 R:R:Y185 12.27419.2NoYes147
42R:R:F285 R:R:Y185 35.55529.28YesYes057
43R:R:G184 R:R:H186 10.23473.18NoYes022
44R:R:F285 R:R:Y281 34.213115.47YesYes056
45R:R:H186 R:R:S122 33.48585.58YesNo025
46R:R:F173 R:R:S122 32.28616.61YesNo065
47R:R:F173 R:R:S176 20.1325.28YesNo065
48R:R:S196 R:R:W197 14.25361.24NoNo035
49R:R:S196 R:R:W192 11.914219.77NoNo034
50R:R:K182 R:R:Y185 15.85068.36YesYes137
51R:R:K182 R:R:W197 12.69418.57YesNo135
52R:R:L211 R:R:Y212 10.8123.52NoYes075
53R:R:T222 R:R:Y223 14.97343.75NoYes079
54R:R:T222 R:R:Y140 13.36886.24NoNo078
55R:R:F173 R:R:I172 11.95927.54YesNo065
56R:R:F203 R:R:S176 14.97345.28YesNo055
57R:R:W278 R:R:Y212 12.37914.82YesYes285
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 6LI3_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3
Number of Linked Nodes 254
Number of Links 259
Number of Hubs 21
Number of Links mediated by Hubs 90
Number of Communities 6
Number of Nodes involved in Communities 25
Number of Links involved in Communities 32
Path Summary
Number Of Nodes in MetaPath 58
Number Of Links MetaPath 57
Number of Shortest Paths 27048
Length Of Smallest Path 3
Average Path Length 12.631
Length of Longest Path 28
Minimum Path Strength 1.23
Average Path Strength 5.693
Maximum Path Strength 13.79
Minimum Path Correlation 0.7
Average Path Correlation 0.949311
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 6.25
Average % Of Corr. Nodes 61.6817
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.5233
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9Y2T5
Sequence
>6LI3_nogp_Chain_R
VDVCIFETV VIVLLTFLI IAGNLTVIF VFHCAPLLH HYTTSYFIQ 
TMAYADLFV GVSCLVPTL SLLHYSTGV HESLTCQVF GYIISVLKS 
VSMWCLACI SVDRYLAIT KPLSYNQLV TPCRLRICI ILIWIYSCL 
IFLPSFFGW GKPGYHGDI FEWCATSWL TSAYFTGFI VCLLYAPAA 
FVVCFTYFH IFKICRQHT KEINDRRAR FPSHMVLFR ITSVFYMLW 
LPYIIYFLL ESSRVLDNP TLSFLTTWL AISNSFCNP VIYSLSNSV 
FRLGLRRLS ETMCT


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8HMPAOrphanOrphanGPR52Homo sapiens-C17Gs/β1/γ22.772023-06-21doi.org/10.1002/mco2.260
8HMP (No Gprot) AOrphanOrphanGPR52Homo sapiens-C172.772023-06-21doi.org/10.1002/mco2.260
6LI0AOrphanOrphanGPR52Homo sapiens-C17-2.22020-02-26doi.org/10.1038/s41586-020-2019-0
6LI1AOrphanOrphanGPR52Homo sapiens---2.92020-02-26doi.org/10.1038/s41586-020-2019-0
6LI2AOrphanOrphanGPR52Homo sapiens---2.82020-02-26doi.org/10.1038/s41586-020-2019-0
6LI3AOrphanOrphanGPR52Homo sapiens--Gs/β1/γ23.322020-02-26doi.org/10.1038/s41586-020-2019-0
6LI3 (No Gprot) AOrphanOrphanGPR52Homo sapiens--3.322020-02-26doi.org/10.1038/s41586-020-2019-0




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 6LI3_nogp.zip



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