Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:T34 1.555405
2R:R:N40 6.1275409
3R:R:I47 4.714537
4R:R:L53 5.988538
5R:R:L64 5.0675429
6R:R:D68 6.2875429
7R:R:V75 7.235417
8R:R:M76 4.355407
9R:R:W88 5.874508
10R:R:W98 6.875405
11R:R:C108 6.404528
12R:R:H112 6.15667628
13R:R:Y121 7.564508
14R:R:W122 9.15544
15R:R:Y130 7.49857747
16R:R:R134 6.335447
17R:R:R138 7.565445
18R:R:V146 4.7075427
19R:R:Y182 5.4467
20R:R:S186 4.1675407
21R:R:F191 9.15667618
22R:R:Y202 4.13667609
23R:R:W304 7.155818
24R:R:L305 5.5025406
25R:R:F307 8.64417
26R:R:F308 10.39517
27R:R:V321 3.1275403
28R:R:W331 8.035616
29R:R:Y334 7.64333617
30R:R:N340 7.76529
31R:R:Y344 6.198529
32R:R:T345 6.3825437
33R:R:F351 7.68857738
34L:L:?1 9.3571010
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:W331 R:R:Y334 17.65528.68YesYes167
2R:R:V75 R:R:Y334 10.18746.31YesYes177
3R:R:V71 R:R:V75 15.78494.81NoYes087
4R:R:S337 R:R:V71 15.62313.23NoNo098
5R:R:D68 R:R:S337 16.010610.31YesNo099
6R:R:D68 R:R:N40 14.28526.73YesYes099
7L:L:?1 R:R:Y334 23.81219.2YesYes107
8L:L:?1 R:R:W304 41.42353.97YesYes108
9R:R:N336 R:R:W304 58.168814.69NoYes098
10R:R:N336 R:R:N340 61.043312.26NoYes099
11R:R:N340 R:R:Y344 88.09064.65YesYes299
12R:R:Y202 R:R:Y344 1002.98YesYes099
13R:R:A117 R:R:Y202 96.31334NoYes089
14R:R:A117 R:R:L201 96.05383.15NoNo085
15R:R:L118 R:R:L201 45.38326.92NoNo055
16R:R:L118 R:R:W122 44.870917.08NoYes054
17R:R:W122 R:R:Y130 74.425417.36YesYes447
18R:R:R134 R:R:Y130 61.225312.35YesYes477
19R:R:P56 R:R:R134 59.68522.88NoYes067
20R:R:P56 R:R:Q55 58.49233.16NoNo067
21R:R:N58 R:R:Q55 57.05336.6NoNo097
22R:R:L53 R:R:N58 20.17936.87YesNo389
23R:R:I47 R:R:L53 15.56924.28YesYes378
24R:R:C62 R:R:I47 19.01668.18NoYes067
25R:R:C62 R:R:I44 15.83543.27NoNo067
26R:R:L201 R:R:Y121 50.45497.03NoYes058
27R:R:W122 R:R:Y121 46.35714.82YesYes048
28R:R:F351 R:R:N58 35.41154.83YesNo389
29R:R:F351 R:R:I47 15.78496.28YesYes387
30R:R:M142 R:R:W122 10.14023.49NoYes074
31R:R:H112 R:R:L64 26.60926.43YesYes289
32R:R:L64 R:R:N340 13.86745.49YesYes299
33R:R:I116 R:R:L64 11.91284.28NoYes299
34R:R:I116 R:R:Y344 11.92966.04NoYes299
35L:L:?1 R:R:M103 10.07958.63YesNo007
36L:L:?1 R:R:S186 12.07456.55YesYes007
37R:R:V75 R:R:W98 25.28146.13YesYes075
38R:R:W88 R:R:W98 17.54736.56YesYes085
39R:R:I110 R:R:W304 13.59445.87NoYes088
40R:R:I110 R:R:P194 12.55643.39NoNo089
41R:R:N126 R:R:Y130 10.00541.16NoYes067
42R:R:F191 R:R:W304 13.27094.01YesYes188
43R:R:F191 R:R:L305 11.58937.31YesYes086
44R:R:I296 R:R:Y202 11.16134.84NoYes089
45R:R:F307 R:R:K310 15.4588.69YesNo075
46R:R:K310 R:R:V321 11.78474.55NoYes053
47R:R:D68 R:R:N340 25.21744.04YesYes299
48R:R:C108 R:R:H112 10.08294.42YesYes288
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:D102 R:R:V75 11.69 1 No Yes 8 7 1 2
R:R:V75 R:R:Y334 6.31 1 Yes Yes 7 7 2 1
R:R:S79 R:R:W331 6.18 1 No Yes 6 6 2 2
R:R:S79 R:R:Y334 5.09 1 No Yes 6 7 2 1
R:R:D102 R:R:Y334 10.34 1 No Yes 8 7 1 1
L:L:?1 R:R:D102 13.02 1 Yes No 0 8 0 1
R:R:M103 R:R:S154 7.67 0 No No 7 7 1 2
L:L:?1 R:R:M103 8.63 1 Yes No 0 7 0 1
R:R:C106 R:R:W304 5.22 1 No Yes 7 8 1 1
L:L:?1 R:R:C106 9.69 1 Yes No 0 7 0 1
R:R:I110 R:R:W304 5.87 0 No Yes 8 8 2 1
R:R:I153 R:R:S186 3.1 0 No Yes 6 7 2 1
R:R:E311 R:R:H177 12.31 0 No No 6 5 1 2
R:R:S186 R:R:Y182 3.82 0 Yes Yes 7 7 1 2
R:R:S186 R:R:T183 3.2 0 Yes No 7 6 1 2
L:L:?1 R:R:S186 6.55 1 Yes Yes 0 7 0 1
R:R:F308 R:R:T187 6.49 1 Yes No 7 7 1 2
L:L:?1 R:R:A190 4.12 1 Yes No 0 6 0 1
R:R:F191 R:R:F300 7.5 1 Yes No 8 9 2 2
R:R:F191 R:R:W304 4.01 1 Yes Yes 8 8 2 1
R:R:F191 R:R:F308 25.72 1 Yes Yes 8 7 2 1
R:R:F300 R:R:W304 7.02 1 No Yes 9 8 2 1
R:R:F308 R:R:W304 8.02 1 Yes Yes 7 8 1 1
R:R:G333 R:R:W304 8.44 0 No Yes 6 8 2 1
R:R:N336 R:R:W304 14.69 0 No Yes 9 8 2 1
L:L:?1 R:R:W304 3.97 1 Yes Yes 0 8 0 1
R:R:F307 R:R:F308 3.22 1 Yes Yes 7 7 1 1
R:R:F307 R:R:K310 8.69 1 Yes No 7 5 1 2
R:R:F307 R:R:T330 7.78 1 Yes No 7 4 1 2
L:L:?1 R:R:F307 14.87 1 Yes Yes 0 7 0 1
L:L:?1 R:R:F308 8.5 1 Yes Yes 0 7 0 1
L:L:?1 R:R:E311 15.02 1 Yes No 0 6 0 1
R:R:T330 R:R:Y334 6.24 0 No Yes 4 7 2 1
R:R:W331 R:R:Y334 8.68 1 Yes Yes 6 7 2 1
L:L:?1 R:R:Y334 9.2 1 Yes Yes 0 7 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7E33_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.98
Number of Linked Nodes 240
Number of Links 277
Number of Hubs 34
Number of Links mediated by Hubs 136
Number of Communities 6
Number of Nodes involved in Communities 54
Number of Links involved in Communities 77
Path Summary
Number Of Nodes in MetaPath 49
Number Of Links MetaPath 48
Number of Shortest Paths 51339
Length Of Smallest Path 3
Average Path Length 13.8125
Length of Longest Path 29
Minimum Path Strength 1.375
Average Path Strength 6.3885
Maximum Path Strength 17.22
Minimum Path Correlation 0.7
Average Path Correlation 0.910368
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 40.694
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.0719
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• binding   • tetrapyrrole binding   • heme binding   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding   • serotonin binding   • amine binding   • heterocyclic compound binding   • G protein-coupled amine receptor activity   • G protein-coupled serotonin receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • Gi/o-coupled serotonin receptor activity   • neurotransmitter receptor activity   • serotonin receptor activity   • electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
Gene OntologyBiological Process• electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • signal transduction   • trans-synaptic signaling   • synaptic signaling   • anterograde trans-synaptic signaling   • cell-cell signaling   • chemical synaptic transmission   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • cellular anatomical structure   • periplasmic space   • synapse   • cell junction   • cell periphery   • plasma membrane   • membrane   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to acetylcholine   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • D2 dopamine receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • enzyme regulator activity   • adenylate cyclase inhibitor activity   • cyclase regulator activity   • molecular function inhibitor activity   • cyclase inhibitor activity   • molecular function regulator activity   • enzyme inhibitor activity   • adenylate cyclase regulator activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • G-protein beta/gamma-subunit complex binding   • G protein activity   • response to peptide hormone   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • negative regulation of protein transport   • regulation of localization   • establishment of protein localization   • nitrogen compound transport   • negative regulation of biological process   • negative regulation of transport   • localization   • negative regulation of secretion   • negative regulation of hormone secretion   • negative regulation of secretion by cell   • intracellular protein localization   • regulation of biological quality   • regulation of peptide hormone secretion   • negative regulation of peptide hormone secretion   • regulation of hormone levels   • establishment of protein localization to extracellular region   • negative regulation of establishment of protein localization   • protein secretion   • establishment of localization   • regulation of protein secretion   • regulation of secretion   • negative regulation of protein secretion   • regulation of hormone secretion   • regulation of protein localization   • regulation of peptide secretion   • transport   • negative regulation of signaling   • hormone secretion   • negative regulation of cell communication   • protein localization to extracellular region   • negative regulation of peptide secretion   • peptide secretion   • regulation of secretion by cell   • secretion by cell   • amide transport   • signal release   • negative regulation of cellular process   • negative regulation of protein localization   • regulation of signaling   • regulation of transport   • secretion   • regulation of peptide transport   • regulation of establishment of protein localization   • export from cell   • regulation of protein transport   • peptide transport   • negative regulation of insulin secretion   • protein transport   • regulation of insulin secretion   • peptide hormone secretion   • macromolecule localization   • hormone transport   • regulation of cell communication   • insulin secretion   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • positive regulation of protein localization to cell periphery   • protein localization to cell periphery   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • regulation of protein localization to cell cortex   • positive regulation of protein localization   • protein localization to cell cortex   • cellular response to forskolin   • response to forskolin   • midbody   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • nucleolus   • intracellular organelle lumen   • organelle lumen   • membraneless organelle   • nuclear lumen   • cell cortex   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • nucleoplasm   • Golgi apparatus   • endomembrane system   • ciliary basal body
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeHVU
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeHVU
Name3-(1-methylpiperidin-4-yl)-1H-indol-5-ol
Synonyms
Identifier
FormulaC14 H18 N2 O
Molecular Weight230.306
SMILES
PubChem2438
Formal Charge0
Total Atoms35
Total Chiral Atoms0
Total Bonds37
Total Aromatic Bonds10

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP28566
Sequence
>7E33_nogp_Chain_R
TEKMLICMT LVVITTLTT LLNLAVIMA IGTTKKLHQ PANYLICSL 
AVTDLLVAV LVMPLSIIY IVMDRWKLG YFLCEVWLS VDMTCCTCS 
IWHLCVIAL DRYWAITNA IEYARKRTA KRAALMILT VWTISIFIS 
MPPLQCTIQ HDHVIYTIY STLGAFYIP LTLILILYY RIYHAAKSL 
SSTRERKAA RILGLILGA FILSWLPFF IKELIVGLS IYTVSSEVA 
DFLTWLGYV NSLINPLLY TSFNEDFKL AFKKL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7E33AAmine5-Hydroxytryptamine5-HT1EHomo sapiensBRL-54443-Gi1/β1/γ22.92021-04-14doi.org/10.1038/s41586-021-03376-8
7E33 (No Gprot) AAmine5-Hydroxytryptamine5-HT1EHomo sapiensBRL-54443-2.92021-04-14doi.org/10.1038/s41586-021-03376-8
8UGYAAmine5-Hydroxytryptamine5-HT1EHomo sapiensMianserin-Gi1/β1/γ13.312024-05-01doi.org/10.1126/sciadv.adk4855
8UGY (No Gprot) AAmine5-Hydroxytryptamine5-HT1EHomo sapiensMianserin-3.312024-05-01doi.org/10.1126/sciadv.adk4855
8UH3AAmine5-Hydroxytryptamine5-HT1EHomo sapiensSetiptiline-Gi1/β1/γ13.312024-05-01doi.org/10.1126/sciadv.adk4855
8UH3 (No Gprot) AAmine5-Hydroxytryptamine5-HT1EHomo sapiensSetiptiline-3.312024-05-01doi.org/10.1126/sciadv.adk4855




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7E33_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.