Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.406361110
2R:R:H21 5.286517
3R:R:N57 6.39439
4R:R:R73 4.15505
5R:R:F77 5.494508
6R:R:Y92 5.9175406
7R:R:W111 7.685619
8R:R:F112 6.932516
9R:R:R114 5.79429716
10R:R:E115 7.908515
11R:R:L130 4.305457
12R:R:E135 6.5475409
13R:R:R151 1.94402
14R:R:V154 4.6975407
15R:R:W162 3.816529
16R:R:L182 4.8025413
17R:R:I188 3.932514
18R:R:L191 6.475414
19R:R:Y192 6.098513
20R:R:Y196 7.215616
21R:R:I197 2.905416
22R:R:I201 3.375414
23R:R:L214 4.165406
24R:R:Y215 4.302509
25R:R:Y219 5.378566
26R:R:V222 2.2875408
27R:R:N234 4.408574
28R:R:W256 5.74618
29R:R:F260 12.19416
30R:R:F263 3.71416
31R:R:D266 8.75414
32R:R:L277 7.3375412
33R:R:K279 2.635404
34R:R:Y298 4.8125409
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R114 23.77792.76YesYes106
2R:R:R114 R:R:W111 21.85179YesYes169
3R:R:L191 R:R:W111 40.35077.97YesYes149
4R:R:H21 R:R:L191 39.737410.29YesYes174
5L:L:?1 R:R:E115 32.16889.04YesYes105
6R:R:E115 R:R:W111 23.668918.54YesYes159
7R:R:H21 R:R:T17 20.35715.48YesNo076
8R:R:P108 R:R:T17 18.1311.75NoNo036
9R:R:H21 R:R:L182 13.65162.57YesYes173
10L:L:?1 R:R:Y22 15.66873.55YesNo009
11R:R:K27 R:R:Y22 15.71423.58NoNo079
12R:R:I188 R:R:L189 13.67442.85YesNo145
13R:R:I188 R:R:L277 15.76874.28YesYes142
14R:R:T187 R:R:V25 10.09454.76NoNo056
15R:R:F278 R:R:K27 14.62843.72NoNo017
16R:R:F278 R:R:K279 13.66072.48NoYes014
17L:L:?1 R:R:I284 21.38835.41YesNo005
18R:R:I284 R:R:Y92 20.20263.63NoYes056
19R:R:C50 R:R:Y92 11.64824.03NoYes066
20L:L:?1 R:R:F260 81.7694.61YesYes106
21R:R:F260 R:R:W256 99.71385.01YesYes168
22R:R:F252 R:R:W256 1004.01NoYes098
23R:R:F252 R:R:L208 99.90913.65NoNo096
24R:R:I253 R:R:L208 99.80922.85NoNo066
25R:R:I253 R:R:V249 99.5823.07NoNo068
26R:R:V249 R:R:Y215 99.31863.79NoYes089
27R:R:Y215 R:R:Y298 79.64294.96YesYes099
28R:R:I78 R:R:Y298 35.43522.42NoYes089
29R:R:I64 R:R:I78 34.34042.94NoNo088
30R:R:I64 R:R:V60 27.58043.07NoNo089
31R:R:P295 R:R:V60 20.49343.53NoNo099
32R:R:N57 R:R:P295 15.5876.52YesNo099
33R:R:I132 R:R:Y298 46.60194.84NoYes099
34R:R:F77 R:R:I132 45.02095.02YesNo089
35R:R:F77 R:R:V154 28.72077.87YesYes087
36R:R:F76 R:R:V154 10.82143.93NoYes047
37R:R:E135 R:R:F77 19.52578.16YesYes098
38R:R:E135 R:R:R73 15.18726.98YesYes095
39R:R:R73 R:R:V154 15.3783.92YesYes057
40R:R:R153 R:R:R73 19.02146.4NoYes055
41R:R:L129 R:R:Y298 21.68827.03NoYes099
42R:R:L129 R:R:L81 20.49344.15NoNo099
43R:R:L81 R:R:S128 19.28047.51NoNo098
44R:R:N80 R:R:S128 18.05834.47NoNo098
45R:R:N80 R:R:W162 11.64825.65NoYes299
46R:R:P108 R:R:S107 13.65163.56NoNo037
47R:R:A133 R:R:Y215 27.79395.34NoYes089
48R:R:A133 R:R:L214 26.91263.15NoYes086
49R:R:H137 R:R:L214 28.80257.71NoYes086
50R:R:K150 R:R:R153 14.437614.85NoNo075
51R:R:K142 R:R:K150 12.01621.44NoNo057
52R:R:F260 R:R:I201 24.40493.77YesYes164
53R:R:H137 R:R:I218 24.07781.33NoNo088
54R:R:I218 R:R:V222 22.8831.54NoYes088
55R:R:L241 R:R:V222 10.50344.47NoYes088
56R:R:S226 R:R:V222 10.51241.62NoYes058
57R:R:F263 R:R:I201 14.85552.51YesYes164
58R:R:F263 R:R:I188 14.65562.51YesYes164
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:Y22 3.55 1 Yes No 0 9 0 1
L:L:?1 R:R:R31 8.28 1 Yes No 0 4 0 1
L:L:?1 R:R:N95 8.32 1 Yes No 0 6 0 1
L:L:?1 R:R:S99 7.96 1 Yes No 0 5 0 1
L:L:?1 R:R:T103 3.35 1 Yes No 0 5 0 1
L:L:?1 R:R:R114 2.76 1 Yes Yes 0 6 0 1
L:L:?1 R:R:E115 9.04 1 Yes Yes 0 5 0 1
L:L:?1 R:R:F119 4.61 1 Yes No 0 5 0 1
L:L:?1 R:R:L122 12.58 1 Yes No 0 6 0 1
L:L:?1 R:R:F260 4.61 1 Yes Yes 0 6 0 1
L:L:?1 R:R:I284 5.41 1 Yes No 0 5 0 1
R:R:K27 R:R:Y22 3.58 0 No No 7 9 2 1
R:R:P190 R:R:Y22 12.52 0 No No 4 9 2 1
R:R:F104 R:R:R31 5.34 0 No No 7 4 2 1
R:R:I284 R:R:Y92 3.63 0 No Yes 5 6 1 2
R:R:N95 R:R:S99 2.98 1 No No 6 5 1 1
R:R:N95 R:R:R114 8.44 1 No Yes 6 6 1 1
R:R:R114 R:R:S99 9.22 1 Yes No 6 5 1 1
R:R:R114 R:R:T103 5.17 1 Yes No 6 5 1 1
R:R:R114 R:R:W111 9 1 Yes Yes 6 9 1 2
R:R:E115 R:R:W111 18.54 1 Yes Yes 5 9 1 2
R:R:P190 R:R:W111 2.7 0 No Yes 4 9 2 2
R:R:W111 R:R:Y192 2.89 1 Yes Yes 9 3 2 2
R:R:E115 R:R:R114 3.49 1 Yes Yes 5 6 1 1
R:R:E115 R:R:L189 3.98 1 Yes No 5 5 1 2
R:R:E115 R:R:Y192 4.49 1 Yes Yes 5 3 1 2
R:R:F119 R:R:Y196 8.25 0 No Yes 5 6 1 2
R:R:L189 R:R:Y192 8.21 1 No Yes 5 3 2 2
R:R:F260 R:R:I201 3.77 1 Yes Yes 6 4 1 2
R:R:F204 R:R:W256 6.01 1 No Yes 7 8 2 2
R:R:F204 R:R:F260 35.37 1 No Yes 7 6 2 1
R:R:F260 R:R:W256 5.01 1 Yes Yes 6 8 1 2
R:R:M98 R:R:R114 2.48 0 No Yes 4 6 2 1
R:R:F119 R:R:G116 1.51 0 No No 5 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7EW3_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.57
Number of Linked Nodes 260
Number of Links 287
Number of Hubs 34
Number of Links mediated by Hubs 134
Number of Communities 8
Number of Nodes involved in Communities 52
Number of Links involved in Communities 71
Path Summary
Number Of Nodes in MetaPath 59
Number Of Links MetaPath 58
Number of Shortest Paths 41021
Length Of Smallest Path 3
Average Path Length 14.285
Length of Longest Path 30
Minimum Path Strength 1.43
Average Path Strength 4.78588
Maximum Path Strength 19.99
Minimum Path Correlation 0.7
Average Path Correlation 0.925698
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 47.0621
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.2675
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• G protein-coupled receptor-like   • Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeS1P
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeS1P
Name(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate
Synonymssphingosine 1-phosphate
Identifier
FormulaC18 H38 N O5 P
Molecular Weight379.472
SMILES
PubChem5283560
Formal Charge0
Total Atoms63
Total Chiral Atoms2
Total Bonds62
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ99500
Sequence
>7EW3_nogp_Chain_R
ETLREHYQY VGKLAGRST LTTVLFLVI CSFIVLENL MVLIAIWKN 
NKFHNRMYF FIGNLALCD LLAGIAYKV NILMSGKKT FSLSPTVWF 
LREGSMFVA LGASTCSLL AIAIERHLT MIKMRPYDA NKRHRVFLL 
IGMCWLIAF TLGALPILG WNCLHNLPD CSTILPLYS KKYIAFCIS 
IFTAILVTI VILYARIYF LVKSSSRKV ANHNNSERS MALLRTVVI 
VVSVFIACW SPLFILFLI DVACRVQAC PILFKAQWF IVLAVLNSA 
MNPVIYTLA SKEMRRAFF RL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7C4SALipidLysophospholipidS1P3Homo sapiensS1P--3.22021-06-09doi.org/10.1126/sciadv.abf5325
7EW2ALipidLysophospholipidS1P3Homo sapiensFTY720-P-Gi1/β1/γ23.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW2 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensFTY720-P-3.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW3ALipidLysophospholipidS1P3Homo sapiensS1P-Gi1/β1/γ23.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW3 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensS1P-3.12021-09-29doi.org/10.1038/s41422-021-00567-w
7EW4ALipidLysophospholipidS1P3Homo sapiensCYM-5541-Gi1/β1/γ23.22021-09-29doi.org/10.1038/s41422-021-00567-w
7EW4 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensCYM-5541-3.22021-09-29doi.org/10.1038/s41422-021-00567-w
9L74ALipidLysophospholipidS1P3Homo sapiensS1P d16:1-chim(NtGi2L-Gs-CtGq)/β1/γ23.732025-11-2610.1073/pnas.2507421122
9L74 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensS1P d16:1-3.732025-11-2610.1073/pnas.2507421122
9WP9ALipidLysophospholipidS1P3Homo sapiensS1P-chim(NtGi2L-Gs-CtGq)/β1/γ23.252025-11-2610.1073/pnas.2507421122
9WP9 (No Gprot) ALipidLysophospholipidS1P3Homo sapiensS1P-3.252025-11-2610.1073/pnas.2507421122




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Download 7EW3_nogp.zip



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