Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 10.4625810
2R:R:F33 3.75407
3R:R:T36 4.214577
4R:R:W49 7.865484
5R:R:R54 6.565485
6R:R:I62 4.36406
7R:R:Y64 5.4525428
8R:R:L67 3.81429
9R:R:D71 6.0125429
10R:R:F74 8.155407
11R:R:F81 5.408516
12R:R:W91 9419
13R:R:F93 8.102507
14R:R:F102 6.166516
15R:R:F110 7.518517
16R:R:R123 6.2525429
17R:R:L128 4.5575498
18R:R:W132 6.84404
19R:R:R137 10.082556
20R:R:T157 7.1025407
21R:R:V160 4.2825414
22R:R:R163 7.745405
23R:R:V164 5.32415
24R:R:T173 2.6725403
25R:R:C176 7.16419
26R:R:F178 6.225414
27R:R:R201 6.655415
28R:R:R205 6.766516
29R:R:F210 7.684548
30R:R:P213 3.3409
31R:R:S220 3.34408
32R:R:Y221 5.382508
33R:R:L223 3.3125494
34R:R:R238 2.552537
35R:R:P239 4.5525437
36R:R:L243 4.5825467
37R:R:V246 4.93408
38R:R:W254 6.91609
39R:R:Y257 6.11407
40R:R:Q258 5.18448
41R:R:V260 4.0075405
42R:R:F291 7.42407
43R:R:N293 8.3775409
44R:R:C295 5.19478
45R:R:N297 6.8525429
46R:R:Y301 7.98429
47R:R:F308 6.615429
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 L:L:L2 25.14966.28YesNo000
2L:L:L2 R:R:F102 24.44956.09NoYes006
3L:L:?1 R:R:R205 21.731416.52YesYes106
4L:L:F3 R:R:R205 18.28575.34NoYes006
5L:L:F3 R:R:I268 16.3393.77NoNo003
6L:L:?1 R:R:Y257 17.80249.57YesYes007
7R:R:T286 R:R:Y257 27.00847.49NoYes077
8R:R:T286 R:R:V285 13.36281.59NoNo076
9L:L:?1 R:R:W254 71.4876.2YesYes009
10R:R:N293 R:R:W254 88.51249.04YesYes099
11R:R:L296 R:R:N293 34.52314.12NoYes069
12R:R:F292 R:R:L296 20.11154.87NoNo056
13R:R:F292 R:R:T36 15.68016.49NoYes757
14R:R:F291 R:R:F33 12.65173.22YesYes077
15R:R:L78 R:R:T36 10.27682.95NoYes087
16R:R:N293 R:R:N297 62.283810.9YesYes099
17R:R:I116 R:R:N297 71.94555.66NoYes289
18R:R:I116 R:R:Y301 10010.88NoYes289
19R:R:R123 R:R:Y301 64.11246.17YesYes299
20R:R:R123 R:R:Y64 48.05614.12YesYes298
21R:R:V302 R:R:Y64 13.20363.79NoYes278
22R:R:V302 R:R:V47 12.45136.41NoNo079
23R:R:F308 R:R:Y64 28.84795.16YesYes298
24R:R:F308 R:R:M55 25.6747.46YesNo095
25R:R:M55 R:R:V50 12.13834.56NoNo057
26R:R:R54 R:R:V50 10.80123.92YesNo057
27R:R:R54 R:R:W49 16.259414.99YesYes854
28R:R:M55 R:R:R311 12.22894.96NoNo055
29R:R:R311 R:R:R54 10.88633.2NoYes055
30R:R:L67 R:R:N297 10.80944.12YesYes299
31R:R:L115 R:R:L67 23.13442.77NoYes089
32R:R:L115 R:R:N66 22.18169.61NoNo089
33R:R:I146 R:R:N66 19.29055.66NoNo079
34R:R:I146 R:R:I62 18.31042.94NoYes076
35R:R:A142 R:R:I62 12.34423.25NoYes076
36R:R:A142 R:R:V59 11.32835.09NoNo077
37R:R:R137 R:R:V59 10.30717YesNo067
38R:R:D71 R:R:N297 23.56826.73YesYes299
39R:R:F291 R:R:F74 29.226817.15YesYes077
40R:R:F74 R:R:S294 50.41466.61YesNo078
41R:R:F81 R:R:V105 22.32449.18YesNo066
42R:R:F291 R:R:F81 23.87293.22YesYes076
43R:R:F74 R:R:V105 23.55445.24YesNo076
44R:R:F81 R:R:V101 20.12793.93YesNo065
45R:R:F80 R:R:V101 18.18136.55NoNo065
46R:R:F102 R:R:R84 10.81497.48YesNo165
47R:R:R84 R:R:W91 27.93928NoYes159
48R:R:F93 R:R:W91 35.011811.02YesYes079
49R:R:C176 R:R:F102 13.225.59YesYes196
50R:R:C176 R:R:W91 10.11759.14YesYes199
51R:R:F93 R:R:P92 34.30624.33YesNo072
52R:R:H90 R:R:P92 25.76194.58NoNo042
53R:R:H90 R:R:T173 21.48155.48NoYes043
54L:L:?1 R:R:R201 22.39318.81YesYes105
55R:R:F178 R:R:R201 21.366210.69YesYes145
56R:R:F178 R:R:M197 23.24693.73YesNo042
57R:R:F180 R:R:M197 22.307928.61NoNo052
58R:R:F180 R:R:R163 20.38338.55NoYes055
59L:L:?1 R:R:F110 14.01917.67YesYes107
60R:R:F110 R:R:L156 11.35856.09YesNo075
61R:R:A249 R:R:L296 25.86351.58NoNo076
62R:R:A249 R:R:L300 25.46541.58NoNo078
63R:R:L300 R:R:V246 25.01782.98NoYes088
64R:R:V246 R:R:Y221 37.90846.31YesYes088
65R:R:V217 R:R:Y221 39.86332.52NoYes088
66R:R:A120 R:R:V217 37.2445.09NoNo098
67R:R:V246 R:R:Y301 41.25538.83YesYes089
68R:R:R123 R:R:Y221 27.62627.2YesYes098
69R:R:A120 R:R:S220 34.61923.42NoYes098
70R:R:C124 R:R:S220 26.71196.89NoYes088
71R:R:C124 R:R:L128 16.04253.17NoYes988
72R:R:P182 R:R:R163 14.469310.09NoYes045
73R:R:Q258 R:R:W254 18.62613.29YesYes089
74R:R:Q258 R:R:Y257 12.82743.38YesYes087
75R:R:F210 R:R:Q258 12.22899.37YesYes488
76R:R:L243 R:R:Y221 13.31898.21YesYes078
77R:R:V242 R:R:V246 26.45931.6NoYes088
78R:R:R238 R:R:V242 21.15483.92YesNo378
79R:R:P239 R:R:R238 12.49242.88YesYes377
80R:R:T286 R:R:V260 12.73139.52NoYes075
81R:R:D71 R:R:L67 28.484.07YesYes299
82R:R:D71 R:R:S294 50.53547.36YesNo098
83R:R:F80 R:R:F93 16.17156.43NoYes067
84R:R:F81 R:R:R84 19.1454.28YesNo165
85R:R:I116 R:R:L67 28.8264.28NoYes289
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D106 8.61 1 Yes No 0 5 0 1
L:L:?1 R:R:L109 10.04 1 Yes No 0 8 0 1
L:L:?1 R:R:F110 17.67 1 Yes Yes 0 7 0 1
L:L:?1 R:R:R201 8.81 1 Yes Yes 0 5 0 1
L:L:?1 R:R:R205 16.52 1 Yes Yes 0 6 0 1
L:L:?1 R:R:W254 6.2 1 Yes Yes 0 9 0 1
L:L:?1 R:R:Y257 9.57 1 Yes Yes 0 7 0 1
L:L:L2 R:R:F102 6.09 0 No Yes 0 6 0 1
L:L:F3 R:R:R205 5.34 0 No Yes 0 6 0 1
L:L:F3 R:R:I268 3.77 0 No No 0 3 0 1
R:R:F81 R:R:R84 4.28 1 Yes No 6 5 2 2
R:R:F102 R:R:F81 6.43 1 Yes Yes 6 6 1 2
R:R:F291 R:R:F81 3.22 0 Yes Yes 7 6 2 2
R:R:F102 R:R:R84 7.48 1 Yes No 6 5 1 2
R:R:F102 R:R:V164 5.24 1 Yes Yes 6 5 1 2
R:R:C176 R:R:F102 5.59 1 Yes Yes 9 6 2 1
R:R:D106 R:R:F110 9.55 1 No Yes 5 7 1 1
R:R:D106 R:R:T157 13.01 1 No Yes 5 7 1 2
R:R:F291 R:R:L109 6.09 0 Yes No 7 8 2 1
R:R:F110 R:R:L156 6.09 1 Yes No 7 5 1 2
R:R:V113 R:R:W254 6.13 0 No Yes 8 9 2 1
R:R:T157 R:R:V160 4.76 0 Yes Yes 7 4 2 2
R:R:V160 R:R:V164 3.21 1 Yes Yes 4 5 2 2
R:R:F178 R:R:V160 5.24 1 Yes Yes 4 4 2 2
R:R:R201 R:R:V160 3.92 1 Yes Yes 5 4 1 2
R:R:F178 R:R:V164 5.24 1 Yes Yes 4 5 2 2
R:R:F178 R:R:R201 10.69 1 Yes Yes 4 5 2 1
R:R:I268 R:R:L198 5.71 0 No No 3 4 1 2
R:R:R201 R:R:R205 3.2 1 Yes Yes 5 6 1 1
R:R:G202 R:R:R205 6 0 No Yes 5 6 2 1
R:R:F250 R:R:W254 9.02 0 No Yes 9 9 2 1
R:R:Q258 R:R:W254 3.29 4 Yes Yes 8 9 2 1
R:R:A290 R:R:W254 7.78 0 No Yes 8 9 2 1
R:R:N293 R:R:W254 9.04 0 Yes Yes 9 9 2 1
R:R:Q258 R:R:Y257 3.38 4 Yes Yes 8 7 2 1
R:R:T286 R:R:Y257 7.49 0 No Yes 7 7 2 1
R:R:A290 R:R:Y257 4 0 No Yes 8 7 2 1
R:R:I268 R:R:L271 4.28 0 No No 3 1 1 2
L:L:F3 R:R:A264 2.77 0 No No 0 4 0 1
R:R:A153 R:R:F110 2.77 0 No Yes 8 7 2 1
R:R:A261 R:R:R205 2.77 0 No Yes 6 6 2 1
R:R:F110 R:R:G111 1.51 1 Yes No 7 7 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7WVU_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.01
Number of Linked Nodes 277
Number of Links 308
Number of Hubs 47
Number of Links mediated by Hubs 164
Number of Communities 9
Number of Nodes involved in Communities 53
Number of Links involved in Communities 67
Path Summary
Number Of Nodes in MetaPath 86
Number Of Links MetaPath 85
Number of Shortest Paths 79017
Length Of Smallest Path 3
Average Path Length 14.1601
Length of Longest Path 27
Minimum Path Strength 1.12
Average Path Strength 6.37562
Maximum Path Strength 18.58
Minimum Path Correlation 0.7
Average Path Correlation 0.930085
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 47.2175
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 51.2744
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeFME
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeFME
NameN-Formylmethionine
Synonyms
  • L-N-Formylmethionine
  • N-formyl-L-methionine
  • Formyl-methionine
  • N-Formylmethionine
  • (2S)-2-(formylamino)-4-(methylthio)butanoic acid
Identifier
FormulaC6 H11 N O3 S
Molecular Weight177.221
SMILES
PubChem439750
Formal Charge0
Total Atoms22
Total Chiral Atoms1
Total Bonds21
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21462
Sequence
>7WVU_nogp_Chain_R
SAGYLFLDI ITYLVFAVT FVLGVLGNG LVIWVAGFR MTHTVTTIS 
YLNLAVADF CFTSTLPFF MVRKAMGGH WPFGWFLCK FVFTIVDIN 
LFGSVFLIA LIALDRCVC VLHPVWTQN HRTVSLAKK VIIGPWVMA 
LLLTLPVII RVTTVPGKT GTVACTFNF SPWTNDPKE RINVAVAML 
TVRGIIRFI IGFSAPMSI VAVSYGLIA TKIHKQGLI KSSRPLRVL 
SFVAAAFFL CWSPYQVVA LIATVRIRE LLQGMYKEI GIAVDVTSA 
LAFFNSCLN PMLYVFMGQ DFRERLIHA L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7T6TAPeptideFormylpeptideFPR1-ALXHomo sapiensfMLFII-Gi1/β1/γ23.22022-03-30doi.org/10.1038/s41467-022-28586-0
7T6T (No Gprot) APeptideFormylpeptideFPR1-ALXHomo sapiensfMLFII-3.22022-03-30doi.org/10.1038/s41467-022-28586-0
7WVUAPeptideFormylpeptideFPR1-ALXHomo sapiensfMLF-Gi1/β1/γ23.32022-04-13doi.org/10.1038/s41467-022-29361-x
7WVU (No Gprot) APeptideFormylpeptideFPR1-ALXHomo sapiensfMLF-3.32022-04-13doi.org/10.1038/s41467-022-29361-x
7EUOAPeptideFormylpeptideFPR1-ALXHomo sapiensfMLF-Gi1/β1/γ22.92022-05-25doi.org/10.1038/s41467-022-32822-y
7EUO (No Gprot) APeptideFormylpeptideFPR1-ALXHomo sapiensfMLF-2.92022-05-25doi.org/10.1038/s41467-022-32822-y
7VFXAPeptideFormylpeptideFPR1-ALXHomo sapiensfMIFL-Gi1/β1/γ22.82022-09-21doi.org/10.1038/s41467-022-32822-y
7VFX (No Gprot) APeptideFormylpeptideFPR1-ALXHomo sapiensfMIFL-2.82022-09-21doi.org/10.1038/s41467-022-32822-y
9KFTAPeptideFormylpeptideFPR1-ALXHomo sapiensfMLFC-Gi1/β1/γ23.062025-11-12To be published
9KFT (No Gprot) APeptideFormylpeptideFPR1-ALXHomo sapiensfMLFC-3.062025-11-12To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7WVU_nogp.zip



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