Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:R57 9.12405
2R:R:F65 4.4975407
3R:R:N72 7.15409
4R:R:I75 4.95409
5R:R:F92 4.645608
6R:R:F120 7.836518
7R:R:F122 5.95416
8R:R:R158 2.635406
9R:R:W165 6.975405
10R:R:Q166 7.2407
11R:R:H170 5.4175407
12R:R:Y189 7.24617
13R:R:C205 6.368519
14R:R:H207 7.3525415
15R:R:W209 7.0225416
16R:R:W218 6.35571717
17R:R:F227 5.19408
18R:R:Y238 6.485409
19R:R:W346 6.72667648
20R:R:P348 2.935409
21R:R:W355 3.6375405
22R:R:I372 8.485404
23R:R:Y380 6.57167637
24R:R:N386 5.945409
25R:R:Y390 5.03667629
26L:L:?12 6.5025810
27L:L:W14 11.875410
28L:L:D16 8.4375410
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:N115 R:R:R57 10.33783.62NoYes055
2R:R:M108 R:R:Y380 13.84735.99NoYes077
3R:R:I372 R:R:N115 11.51984.25YesNo045
4L:L:W14 R:R:I372 33.695519.97YesYes004
5L:L:W14 R:R:R356 40.291912YesNo104
6L:L:D16 R:R:R356 41.90574.76YesNo104
7L:L:D16 R:R:Y189 36.99148.05YesYes107
8R:R:P190 R:R:Y189 99.97274.17NoYes067
9R:R:P190 R:R:Y132 99.99099.74NoNo066
10R:R:V136 R:R:Y132 1008.83NoNo066
11R:R:S182 R:R:V136 99.99093.23NoNo086
12R:R:S182 R:R:V140 99.80914.85NoNo088
13R:R:V140 R:R:W179 99.672722.07NoNo089
14R:R:S95 R:R:W179 99.59096.18NoNo099
15R:R:I175 R:R:S95 99.39997.74NoNo079
16R:R:F92 R:R:I175 99.29083.77YesNo087
17R:R:F92 R:R:I148 72.97813.77YesNo089
18R:R:I148 R:R:Y390 61.38563.63NoYes299
19R:R:L145 R:R:Y390 33.33183.52NoYes099
20R:R:L145 R:R:N386 32.26356.87NoYes099
21R:R:D100 R:R:N386 16.31594.04NoYes099
22R:R:D100 R:R:N72 11.369712.12NoYes099
23R:R:N386 R:R:P387 12.55173.26YesNo099
24R:R:N72 R:R:P387 11.34256.52YesNo099
25R:R:L101 R:R:N72 15.2435.49NoYes089
26R:R:C391 R:R:I75 23.81234.91NoYes079
27R:R:C391 R:R:L93 28.33574.76NoNo078
28R:R:L93 R:R:Y390 29.46315.86NoYes089
29R:R:I75 R:R:L79 15.45212.85YesNo098
30R:R:L79 R:R:L85 10.39232.77NoNo088
31R:R:E151 R:R:F92 40.03278.16NoYes098
32R:R:F92 R:R:V174 20.42555.24YesNo086
33L:L:M15 R:R:C205 14.52474.86NoYes109
34L:L:M15 R:R:H207 39.88733.94NoYes105
35L:L:?12 L:L:M15 24.59438.11YesNo100
36R:R:S379 R:R:Y380 20.00273.82NoYes077
37R:R:S379 R:R:W346 21.10297.41NoYes078
38R:R:V138 R:R:W346 28.13118.58NoYes078
39L:L:F17 R:R:Y189 29.74957.22NoYes007
40R:R:F342 R:R:W346 10.20596.01NoYes098
41R:R:I148 R:R:R152 10.93796.26NoNo299
42R:R:R152 R:R:Y238 12.64726.17NoYes099
43R:R:E151 R:R:Q166 19.65727.65NoYes097
44R:R:E151 R:R:H170 19.60274.92NoYes097
45R:R:H170 R:R:V174 19.47996.92YesNo076
46R:R:C157 R:R:Y153 16.6256.72NoNo078
47R:R:R158 R:R:Y153 29.71314.12YesNo068
48R:R:R158 R:R:S154 39.69632.64YesNo065
49R:R:S154 R:R:W165 42.85134.94NoYes055
50R:R:Q166 R:R:W165 16.652312.05YesYes075
51R:R:H170 R:R:W165 32.64088.46YesYes075
52R:R:C157 R:R:E244 13.24277.6NoNo076
53R:R:W218 R:R:Y189 20.016410.61YesYes177
54R:R:W209 R:R:W218 10.5565.62YesYes167
55R:R:I372 R:R:I375 24.63524.42YesNo046
56R:R:I375 R:R:P348 23.48963.39NoYes069
57R:R:L347 R:R:P348 18.81624.93NoYes079
58R:R:F227 R:R:L347 17.62517.31YesNo087
59R:R:F227 R:R:L223 12.76994.87YesNo087
60R:R:L223 R:R:T354 10.28782.95NoNo076
61R:R:A363 R:R:W355 11.7383.89NoYes035
62L:L:W14 R:R:A363 12.96543.89YesNo003
63R:R:I76 R:R:L101 10.19682.85NoNo088
64R:R:F120 R:R:F122 11.80169.65YesYes186
65L:L:F17 R:R:V138 28.82213.93NoNo007
66R:R:H207 R:R:Y189 36.5059.8YesYes157
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F120 R:R:P114 5.78 1 Yes No 8 5 1 1
L:L:?12 R:R:P114 5.89 1 Yes No 0 5 0 1
R:R:I372 R:R:N115 4.25 0 Yes No 4 5 1 2
L:L:?12 R:R:G118 4.91 1 Yes No 0 4 0 1
R:R:F120 R:R:F122 9.65 1 Yes Yes 8 6 1 2
R:R:C127 R:R:F120 5.59 1 No Yes 9 8 2 1
R:R:C205 R:R:F120 11.17 1 Yes Yes 9 8 1 1
L:L:?12 R:R:F120 6.99 1 Yes Yes 0 8 0 1
R:R:C127 R:R:V195 3.42 1 No No 9 4 2 2
R:R:C127 R:R:C205 7.28 1 No Yes 9 9 2 1
R:R:V138 R:R:W346 8.58 0 No Yes 7 8 1 2
L:L:F17 R:R:V138 3.93 0 No No 0 7 0 1
R:R:M186 R:R:Y189 3.59 1 No Yes 8 7 2 1
R:R:M186 R:R:W218 3.49 1 No Yes 8 7 2 2
R:R:P190 R:R:Y189 4.17 0 No Yes 6 7 2 1
R:R:H207 R:R:Y189 9.8 1 Yes Yes 5 7 1 1
R:R:W218 R:R:Y189 10.61 1 Yes Yes 7 7 2 1
L:L:D16 R:R:Y189 8.05 1 Yes Yes 0 7 0 1
L:L:F17 R:R:Y189 7.22 0 No Yes 0 7 0 1
R:R:H207 R:R:T193 6.85 1 Yes No 5 6 1 2
R:R:C205 R:R:V195 5.12 1 Yes No 9 4 1 2
R:R:V198 R:R:V202 4.81 1 No No 1 1 2 2
R:R:Q204 R:R:V198 5.73 1 No No 4 1 1 2
R:R:Q204 R:R:V202 7.16 1 No No 4 1 1 2
L:L:?12 R:R:Q204 14.32 1 Yes No 0 4 0 1
L:L:?12 R:R:C205 3.41 1 Yes Yes 0 9 0 1
L:L:M15 R:R:C205 4.86 1 No Yes 0 9 0 1
L:L:M15 R:R:H207 3.94 1 No Yes 0 5 0 1
L:L:D16 R:R:H207 8.82 1 Yes Yes 0 5 0 1
L:L:D16 R:R:N353 12.12 1 Yes No 0 7 0 1
R:R:A363 R:R:W355 3.89 0 No Yes 3 5 1 2
R:R:H364 R:R:R356 4.51 1 No No 1 4 1 1
L:L:W14 R:R:R356 12 1 Yes No 0 4 0 1
L:L:D16 R:R:R356 4.76 1 Yes No 0 4 0 1
R:R:G362 R:R:R365 4.5 0 No No 4 3 2 1
L:L:W14 R:R:A363 3.89 1 Yes No 0 3 0 1
L:L:W14 R:R:H364 11.64 1 Yes No 0 1 0 1
R:R:G369 R:R:S368 3.71 0 No No 3 5 2 1
L:L:A11 R:R:S368 3.42 0 No No 0 5 0 1
R:R:I372 R:R:I375 4.42 0 Yes No 4 6 1 2
R:R:H376 R:R:I372 5.3 3 No Yes 5 4 2 1
L:L:W14 R:R:I372 19.97 1 Yes Yes 0 4 0 1
L:L:E10 R:R:R365 2.33 0 No No 0 3 0 1
R:R:G118 R:R:T119 1.82 0 No No 4 4 1 2
R:R:L113 R:R:P114 1.64 0 No No 5 5 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7XOW_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.23
Number of Linked Nodes 258
Number of Links 277
Number of Hubs 28
Number of Links mediated by Hubs 119
Number of Communities 4
Number of Nodes involved in Communities 35
Number of Links involved in Communities 46
Path Summary
Number Of Nodes in MetaPath 67
Number Of Links MetaPath 66
Number of Shortest Paths 41718
Length Of Smallest Path 3
Average Path Length 16.082
Length of Longest Path 36
Minimum Path Strength 1.315
Average Path Strength 6.34448
Maximum Path Strength 15.805
Minimum Path Correlation 0.7
Average Path Correlation 0.918092
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 38.3656
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 32.5378
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeTYS
PDB ResiduesL:L:?12
Environment DetailsOpen EMBL-EBI Page
CodeTYS
NameO-SULFO-L-TYROSINE
Synonyms
Identifier
FormulaC9 H11 N O6 S
Molecular Weight261.252
SMILES
PubChem514186
Formal Charge0
Total Atoms28
Total Chiral Atoms1
Total Bonds28
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP32239
Sequence
>7XOW_nogp_Chain_R
ELAIRITLY AVIFLMSVG GNMLIIVVL GLSRRLRTV TNAFLLSLA 
VSDLLLAVA CMPFTLLPN LMGTFIFGT VICKAVSYL MGVSVSVST 
LSLVAIALE RYSAICRPL QARVWQTRS HAARVIVAT WLLSGLLMV 
PYPVYTVVQ PVGPRVLQC VHRWPSARV RQTWSVLLL LLLFFIPGV 
VMAVAYGLI SRELYLGKL LAKKRVVRM LLVIVVLFF LCWLPVYSA 
NTWRAFDGP GAHRALSGA PISFIHLLS YASACVNPL VYCFMHRRF 
RQACLE


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7XOWAPeptideCholecystokininCCKBHomo sapiensGastrin-chim(NtGi1-Gq)/β1/γ23.12022-07-20doi.org/10.1038/s41421-022-00420-3
7XOW (No Gprot) APeptideCholecystokininCCKBHomo sapiensGastrin-3.12022-07-20doi.org/10.1038/s41421-022-00420-3
8IA7APeptideCholecystokininCCKBHomo sapiensCholecystokinin-8-chim(NtGi1L-Gq)/β1/γ23.12023-12-06doi.org/10.1038/s41421-022-00420-3
8IA7 (No Gprot) APeptideCholecystokininCCKBHomo sapiensCholecystokinin-8-3.12023-12-06doi.org/10.1038/s41421-022-00420-3
7F8VAPeptideCholecystokininCCKBHomo sapiensGastrin-17-Gi2/β1/γ23.32021-10-13doi.org/10.1038/s41589-021-00866-8
7F8V (No Gprot) APeptideCholecystokininCCKBHomo sapiensGastrin-17-3.32021-10-13doi.org/10.1038/s41589-021-00866-8
7F8WAPeptideCholecystokininCCKBHomo sapiensGastrin-17-chim(NtGsL-Gq)/β1/γ23.12021-10-13doi.org/10.1038/s41589-021-00866-8
7F8W (No Gprot) APeptideCholecystokininCCKBHomo sapiensGastrin-17-3.12021-10-13doi.org/10.1038/s41589-021-00866-8




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7XOW_nogp.zip



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