Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:Y12 7.4525440
2L:L:D16 9.3975410
3L:L:?17 8.482510
4R:R:R57 5.1505
5R:R:Y61 10.3825407
6R:R:I75 4.388509
7R:R:F92 6.814508
8R:R:M134 4.7875408
9R:R:V140 6.805408
10R:R:I148 3.565429
11R:R:E151 6.9425409
12R:R:W165 7.8675405
13R:R:Q166 6.415407
14R:R:H170 7.27407
15R:R:S182 2.895408
16R:R:Y189 5.63286717
17R:R:V195 4.79404
18R:R:H207 7.698515
19R:R:W209 4.976516
20R:R:L226 4.5775408
21R:R:Y238 6.845629
22R:R:K328 8.1375408
23R:R:M334 4.2275408
24R:R:W346 7.934568
25R:R:Y350 7.42407
26R:R:R356 6.414514
27R:R:H364 4.18411
28R:R:Y380 4.64833617
29R:R:S382 4.695469
30R:R:Y390 5.77667629
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:N115 R:R:R57 15.9843.62NoYes055
2L:L:W4 R:R:N115 13.00765.65NoNo005
3L:L:W4 R:R:Q204 11.97158.76NoNo004
4R:R:R57 R:R:S373 26.794210.54YesNo055
5R:R:S373 R:R:Y61 27.61825.09NoYes057
6R:R:Y380 R:R:Y61 35.72675.96YesYes077
7L:L:?17 R:R:Y380 40.54593.8YesYes107
8L:L:?17 L:L:D16 19.15167.7YesYes100
9L:L:D16 R:R:R356 13.42149.53YesYes104
10R:R:H364 R:R:R356 10.60854.51YesYes114
11L:L:D16 R:R:Y189 24.76016.9YesYes107
12R:R:H207 R:R:Y189 24.3889.8YesYes157
13L:L:M15 R:R:H207 28.7177.88NoYes005
14L:L:M15 R:R:F120 27.44783.73NoNo008
15L:L:?17 R:R:M134 13.31718.02YesYes008
16L:L:?17 R:R:V138 44.589719.31YesNo007
17R:R:V138 R:R:W346 44.7746.13NoYes078
18R:R:W346 R:R:Y350 46.64126.75YesYes087
19R:R:L226 R:R:Y350 57.76778.21YesYes087
20R:R:L226 R:R:S139 1003YesNo088
21R:R:S139 R:R:S182 99.80183.26NoYes088
22R:R:S182 R:R:V140 98.70653.23YesYes088
23R:R:T178 R:R:V140 94.66971.59NoYes078
24R:R:T178 R:R:V174 94.07161.59NoNo076
25R:R:F92 R:R:V174 80.33385.24YesNo086
26R:R:F92 R:R:I148 78.87693.77YesYes089
27R:R:I148 R:R:Y390 55.69193.63YesYes299
28R:R:L93 R:R:Y390 27.24974.69NoYes089
29R:R:C391 R:R:L93 21.63776.35NoNo078
30R:R:C391 R:R:I75 15.87274.91NoYes079
31R:R:E151 R:R:F92 15.44855.83YesYes098
32R:R:E151 R:R:V88 11.3564.28YesNo096
33R:R:H170 R:R:V174 19.32556.92YesNo076
34R:R:E151 R:R:H170 10.55634.92YesYes097
35R:R:F120 R:R:L203 18.68574.87NoNo083
36R:R:L203 R:R:V195 14.10647.45NoYes034
37R:R:K128 R:R:T193 14.8544.5NoNo076
38R:R:H207 R:R:T193 10.94238.21YesNo156
39R:R:I148 R:R:R152 23.00423.76YesNo299
40R:R:R152 R:R:Y238 22.26018.23NoYes299
41R:R:Y238 R:R:Y390 25.20514.96YesYes299
42R:R:F342 R:R:W346 11.83247.02NoYes098
43R:R:F342 R:R:G231 10.81023.01NoNo096
44R:R:G231 R:R:P230 14.79492.03NoNo069
45R:R:A149 R:R:Y238 15.75454NoYes099
46R:R:A149 R:R:A237 13.78651.79NoNo096
47R:R:A237 R:R:Y153 11.81152.67NoNo068
48R:R:L335 R:R:Y238 25.556315.24NoYes089
49R:R:K128 R:R:V191 12.37831.52NoNo074
50R:R:W218 R:R:Y189 28.94994.82NoYes177
51R:R:L222 R:R:W218 50.594612.53NoNo077
52R:R:F227 R:R:Y350 12.315712.38NoYes087
53R:R:L335 R:R:S242 17.88941.5NoNo086
54R:R:S242 R:R:V332 15.92846.46NoNo067
55R:R:V332 R:R:Y246 13.95697.57NoNo076
56R:R:L222 R:R:L226 50.71974.15NoYes078
57R:R:H207 R:R:W209 15.7514.23YesYes156
58R:R:W209 R:R:W218 21.45346.56YesNo167
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:W4 R:R:N115 5.65 0 No No 0 5 0 1
L:L:W4 R:R:Q204 8.76 0 No No 0 4 0 1
L:L:A11 R:R:P361 3.74 0 No No 0 1 0 1
L:L:A11 R:R:H364 5.85 0 No Yes 0 1 0 1
L:L:Y12 R:R:V198 3.79 4 Yes No 0 1 0 1
L:L:Y12 R:R:Q204 10.15 4 Yes No 0 4 0 1
L:L:G13 R:R:R356 3 1 No Yes 0 4 0 1
L:L:G13 R:R:H364 3.18 1 No Yes 0 1 0 1
L:L:W14 R:R:R356 9 0 No Yes 0 4 0 1
L:L:W14 R:R:I372 22.31 0 No No 0 4 0 1
L:L:W14 R:R:H376 5.29 0 No No 0 5 0 1
L:L:M15 R:R:F120 3.73 0 No No 0 8 0 1
L:L:M15 R:R:H207 7.88 0 No Yes 0 5 0 1
L:L:D16 R:R:Y189 6.9 1 Yes Yes 0 7 0 1
L:L:D16 R:R:N353 13.46 1 Yes No 0 7 0 1
L:L:D16 R:R:R356 9.53 1 Yes Yes 0 4 0 1
L:L:?17 R:R:T111 3.58 1 Yes No 0 7 0 1
L:L:?17 R:R:M134 8.02 1 Yes Yes 0 8 0 1
L:L:?17 R:R:V138 19.31 1 Yes No 0 7 0 1
L:L:?17 R:R:Y380 3.8 1 Yes Yes 0 7 0 1
R:R:N115 R:R:R57 3.62 0 No Yes 5 5 1 1
R:R:A370 R:R:R57 5.53 0 No Yes 3 5 2 1
R:R:R57 R:R:S373 10.54 0 Yes No 5 5 1 2
R:R:F374 R:R:R57 3.21 0 No Yes 5 5 2 1
R:R:S373 R:R:Y61 5.09 0 No Yes 5 7 2 2
R:R:Y380 R:R:Y61 5.96 1 Yes Yes 7 7 1 2
R:R:C107 R:R:M134 6.48 0 No Yes 7 8 2 1
R:R:C107 R:R:Y380 4.03 0 No Yes 7 7 2 1
R:R:M108 R:R:Y380 5.99 0 No Yes 7 7 2 1
R:R:T111 R:R:Y380 3.75 1 No Yes 7 7 1 1
R:R:F120 R:R:P114 8.67 0 No No 8 5 1 2
R:R:F120 R:R:L203 4.87 0 No No 8 3 1 2
R:R:M134 R:R:V130 3.04 0 Yes No 8 6 1 2
R:R:S131 R:R:Y189 6.36 1 No Yes 5 7 2 1
R:R:S131 R:R:T193 9.59 1 No No 5 6 2 2
R:R:H207 R:R:S131 8.37 1 Yes No 5 5 1 2
R:R:V138 R:R:W346 6.13 0 No Yes 7 8 1 2
R:R:M186 R:R:Y189 4.79 0 No Yes 8 7 2 1
R:R:H207 R:R:Y189 9.8 1 Yes Yes 5 7 1 1
R:R:W209 R:R:Y189 3.86 1 Yes Yes 6 7 2 1
R:R:W218 R:R:Y189 4.82 1 No Yes 7 7 2 1
R:R:H207 R:R:T193 8.21 1 Yes No 5 6 1 2
R:R:V198 R:R:V202 3.21 4 No No 1 1 1 2
R:R:Q204 R:R:V198 10.03 4 No No 4 1 1 1
R:R:H207 R:R:W209 4.23 1 Yes Yes 5 6 1 2
R:R:W209 R:R:W218 6.56 1 Yes No 6 7 2 2
R:R:N353 R:R:R356 6.03 1 No Yes 7 4 1 1
R:R:H364 R:R:R356 4.51 1 Yes Yes 1 4 1 1
R:R:G360 R:R:P361 4.06 0 No No 1 1 2 1
R:R:G360 R:R:H364 3.18 0 No Yes 1 1 2 1
R:R:G362 R:R:R365 6 0 No No 4 3 2 1
R:R:H376 R:R:Y380 4.36 0 No Yes 5 7 1 1
R:R:G135 R:R:Y189 2.9 0 No Yes 6 7 2 1
L:L:?1 R:R:R57 2.6 3 No Yes 0 5 0 1
L:L:L5 R:R:R365 2.43 0 No No 0 3 0 1
L:L:G13 R:R:V206 1.84 1 No No 0 4 0 1
R:R:G369 R:R:N115 1.7 0 No No 3 5 2 1
R:R:A106 R:R:M134 1.61 0 No Yes 5 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7F8W_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.95
Number of Linked Nodes 270
Number of Links 287
Number of Hubs 30
Number of Links mediated by Hubs 115
Number of Communities 8
Number of Nodes involved in Communities 36
Number of Links involved in Communities 43
Path Summary
Number Of Nodes in MetaPath 59
Number Of Links MetaPath 58
Number of Shortest Paths 51072
Length Of Smallest Path 3
Average Path Length 15.0701
Length of Longest Path 33
Minimum Path Strength 1.38
Average Path Strength 5.47084
Maximum Path Strength 15.24
Minimum Path Correlation 0.7
Average Path Correlation 0.924176
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 43.7627
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 43.9053
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• enzyme regulator activity   • molecular function regulator activity   • 1-phosphatidylinositol-3-kinase regulator activity   • kinase regulator activity   • protein binding   • binding   • signaling receptor binding   • type B gastrin/cholecystokinin receptor binding   • G protein-coupled receptor binding   • cholecystokinin receptor binding   • neuropeptide receptor binding   • amide binding   • peptide hormone binding   • hormone binding   • peptide receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • gastrin receptor activity   • G protein-coupled peptide receptor activity   • signaling receptor activity   • transmembrane signaling receptor activity   • neuropeptide receptor activity   • cholecystokinin receptor activity   • localization   • multicellular organismal process   • system process   • digestion   • secretion   • transport   • digestive system process   • acid secretion   • gastric acid secretion   • establishment of localization   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus
Gene OntologyBiological Process• localization   • multicellular organismal process   • system process   • digestion   • secretion   • transport   • digestive system process   • acid secretion   • gastric acid secretion   • establishment of localization   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • neuropeptide signaling pathway   • cell population proliferation   • positive regulation of cell population proliferation   • regulation of cell population proliferation   • positive regulation of biological process   • positive regulation of cellular process   • cholecystokinin signaling pathway   • positive regulation of cytosolic calcium ion concentration   • regulation of biological quality   • cell surface receptor signaling pathway   • developmental process   • gland development   • animal organ development   • anatomical structure development   • phospholipase C-activating G protein-coupled receptor signaling pathway   • multicellular organism development   • digestive system development   • tube development   • digestive tract development   • system development   • chemical homeostasis   • homeostatic process   • regulation of pH   • monoatomic ion homeostasis   • monoatomic cation homeostasis   • pH reduction   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • membrane-bounded organelle   • intracellular organelle   • intracellular anatomical structure   • organelle   • intracellular membrane-bounded organelle   • hormone activity   • protein binding   • binding   • molecular function activator activity   • signaling receptor binding   • molecular function regulator activity   • signaling receptor regulator activity   • receptor ligand activity   • signaling receptor activator activity   • response to nutrient levels   • response to food   • response to chemical   • extracellular region   • extracellular space   • G-protein beta-subunit binding   • fibroblast proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • vesicle   • extracellular membrane-bounded organelle   • synapse   • cell junction   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • sensory organ development   • eye development   • retina development in camera-type eye   • visual system development   • camera-type eye development   • sensory system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • GTPase regulator activity   • enzyme regulator activity   • enzyme activator activity   • GTPase activator activity   • nucleoside-triphosphatase regulator activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • G-protein beta/gamma-subunit complex binding   • G protein activity   • G protein-coupled receptor binding   • cation binding   • metal ion binding   • regulation of signaling   • regulation of Wnt signaling pathway   • regulation of canonical Wnt signaling pathway   • canonical Wnt signaling pathway   • regulation of signal transduction   • regulation of response to stimulus   • regulation of cell communication   • Wnt signaling pathway   • regulation of body fluid levels   • wound healing   • hemostasis   • blood coagulation   • response to stress   • coagulation   • response to wounding   • regulation of protein stability   • protein stabilization   • phospholipase C-activating serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • rhythmic process   • entrainment of circadian clock   • circadian rhythm   • response to external stimulus   • regulation of circadian rhythm   • glutamate receptor signaling pathway   • detection of light stimulus   • response to light stimulus   • phototransduction   • detection of external stimulus   • detection of visible light   • detection of abiotic stimulus   • detection of stimulus   • response to abiotic stimulus   • response to radiation   • phototransduction, visible light   • cell activation   • regulation of cell activation   • regulation of platelet activation   • regulation of multicellular organismal process   • platelet activation   • phospholipase C-activating G protein-coupled glutamate receptor signaling pathway   • G protein-coupled glutamate receptor signaling pathway   • nuclear membrane   • nucleus   • endomembrane system   • organelle envelope   • nuclear envelope   • Golgi apparatus   • cytosolic region   • postsynapse   • postsynaptic cytosol
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePCA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePCA
NamePidolic acid
SynonymsL-pyroglutamic acid
Identifier
FormulaC5 H7 N O3
Molecular Weight129.114
SMILES
PubChem7405
Formal Charge0
Total Atoms16
Total Chiral Atoms1
Total Bonds16
Total Aromatic Bonds0

CodeNFA
PDB ResiduesL:L:?17
Environment DetailsOpen EMBL-EBI Page
CodeNFA
NamePhenylalanylamide
Synonyms
  • Phenylalanine amide
  • (S)-2-amino-3-phenylpropanamide
  • Phenylalaninamide
  • L-phenylalanine amide
  • Phenylalanylamide
Identifier
FormulaC9 H12 N2 O
Molecular Weight164.204
SMILES
PubChem445694
Formal Charge0
Total Atoms24
Total Chiral Atoms1
Total Bonds24
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP32239
Sequence
>7F8W_nogp_Chain_R
AIRITLYAV IFLMSVGGN MLIIVVLGL SRRLRTVTN AFLLSLAVS 
DLLLAVACM PFTLLPNLM GTFIFGTVI CKAVSYLMG VSVSVSTLS 
LVAIALERY SAICRPLQA RVWQTRSHA ARVIVATWL LSGLLMVPY 
PVYTVVQPV GPRVLQCVH RWPSARVRQ TWSVLLLLL LFFIPGVVM 
AVAYGLISR ELYLGLLAK KRVVRMLLV IVVLFFLCW LPVYSANTW 
RAFDGPGAH RALSGAPIS FIHLLSYAS ACVNPLVYC FMHRRFRQA 
CLETC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7XOWAPeptideCholecystokininCCKBHomo sapiensGastrin-chim(NtGi1-Gq)/β1/γ23.12022-07-20doi.org/10.1038/s41421-022-00420-3
7XOW (No Gprot) APeptideCholecystokininCCKBHomo sapiensGastrin-3.12022-07-20doi.org/10.1038/s41421-022-00420-3
8IA7APeptideCholecystokininCCKBHomo sapiensCholecystokinin-8-chim(NtGi1L-Gq)/β1/γ23.12023-12-06doi.org/10.1038/s41421-022-00420-3
8IA7 (No Gprot) APeptideCholecystokininCCKBHomo sapiensCholecystokinin-8-3.12023-12-06doi.org/10.1038/s41421-022-00420-3
7F8VAPeptideCholecystokininCCKBHomo sapiensGastrin-17-Gi2/β1/γ23.32021-10-13doi.org/10.1038/s41589-021-00866-8
7F8V (No Gprot) APeptideCholecystokininCCKBHomo sapiensGastrin-17-3.32021-10-13doi.org/10.1038/s41589-021-00866-8
7F8WAPeptideCholecystokininCCKBHomo sapiensGastrin-17-chim(NtGsL-Gq)/β1/γ23.12021-10-13doi.org/10.1038/s41589-021-00866-8
7F8W (No Gprot) APeptideCholecystokininCCKBHomo sapiensGastrin-17-3.12021-10-13doi.org/10.1038/s41589-021-00866-8




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Download 7F8W_nogp.zip



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