Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L54 4.1625406
2R:R:Y58 4.86407
3R:R:M75 6.17427
4R:R:F76 7.44436
5R:R:H79 6.0425425
6R:R:W83 8.56536
7R:R:Y89 4.85507
8R:R:Y100 8.29407
9R:R:L104 3.9825407
10R:R:Y110 9.384515
11R:R:Y111 7.344515
12R:R:W117 7.37833618
13R:R:F119 4.1275417
14R:R:Q127 5.08414
15R:R:R128 9.275415
16R:R:F141 6.692547
17R:R:L142 4.4875408
18R:R:I145 5.4025458
19R:R:Y150 7.6975477
20R:R:Y155 7.6275476
21R:R:W176 7.41449
22R:R:R195 10.84511
23R:R:T201 9.35413
24R:R:C202 9.2025419
25R:R:Y203 8.718514
26R:R:D204 8.98516
27R:R:T205 9.035415
28R:R:L211 3.73404
29R:R:Y214 7.774514
30R:R:Y217 9.57405
31R:R:Y237 6.93167669
32R:R:Y273 7.7508
33R:R:I274 5.03495
34R:R:H277 9.1875408
35R:R:M279 2.6225405
36R:R:K280 5.526506
37R:R:R287 8.5875405
38R:R:L288 4.1475483
39R:R:Y306 7.40333614
40R:R:Q307 8.93515
41R:R:R310 8.08415
42R:R:Y324 6.26459
43R:R:F325 3.836526
44L:L:?1 8.643641110
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R195 20.712911.32YesYes101
2L:L:?1 R:R:R287 16.832710.56YesYes005
3R:R:Q307 R:R:Y303 11.559219.16YesNo054
4L:L:?1 R:R:Y303 10.413410.92YesNo004
5R:R:Q307 R:R:Y306 30.72275.64YesYes154
6R:R:N283 R:R:Y306 17.80928.14NoYes044
7R:R:N283 R:R:R287 15.56649.64NoYes045
8L:L:?1 R:R:Y111 11.00598.01YesYes105
9R:R:L54 R:R:Y58 19.87635.86YesYes067
10R:R:L104 R:R:Y58 13.02084.69YesYes077
11R:R:D97 R:R:P321 12.496714.49NoNo099
12R:R:L93 R:R:P321 13.71093.28NoNo099
13R:R:L142 R:R:L93 28.9035.54YesNo089
14R:R:F269 R:R:L142 69.65173.65NoYes098
15R:R:F269 R:R:Y273 94.06258.25NoYes098
16R:R:H277 R:R:Y273 1004.36YesYes088
17R:R:F276 R:R:H277 89.583310.18NoYes078
18R:R:F276 R:R:Y306 90.03264.13NoYes074
19R:R:D97 R:R:N69 11.27613.46NoNo099
20R:R:F98 R:R:N69 10.04887.25NoNo079
21R:R:L142 R:R:Y324 56.46814.69YesYes089
22R:R:I145 R:R:Y324 54.65826.04YesYes589
23R:R:I145 R:R:I86 42.60094.42YesNo087
24R:R:I86 R:R:S84 36.92383.1NoNo077
25R:R:S84 R:R:S87 34.99023.26NoNo077
26R:R:S87 R:R:W83 34.013712.36NoYes076
27R:R:F76 R:R:W83 25.84318.02YesYes366
28R:R:F76 R:R:M90 25.27023.73YesNo068
29R:R:F331 R:R:M90 24.22533.73NoNo088
30R:R:F325 R:R:F331 21.15564.29YesNo068
31R:R:I145 R:R:Y89 12.73763.63YesYes087
32R:R:F141 R:R:L93 14.91864.87YesNo079
33R:R:F131 R:R:Y100 13.587214.44NoYes077
34R:R:N134 R:R:Y100 17.24934.65NoYes087
35L:L:?1 R:R:D204 11.614614.33YesYes106
36R:R:D204 R:R:H132 12.61073.78YesNo065
37R:R:F131 R:R:H132 11.5693.39NoNo075
38R:R:W117 R:R:Y110 16.367211.58YesYes185
39R:R:R310 R:R:Y306 48.753314.4YesYes154
40R:R:R310 R:R:Y111 26.36076.17YesYes155
41R:R:D204 R:R:R310 23.74673.57YesYes165
42R:R:N197 R:R:T199 10.582714.62NoNo044
43R:R:N197 R:R:R195 13.21297.23NoYes041
44R:R:C124 R:R:C202 11.7097.28NoYes199
45R:R:D121 R:R:T192 10.19218.67NoNo035
46R:R:C124 R:R:T192 15.25073.38NoNo095
47R:R:I183 R:R:V133 10.42647.68NoNo075
48R:R:N134 R:R:V133 13.85092.96NoNo085
49R:R:C236 R:R:S146 21.49415.16NoNo069
50R:R:S146 R:R:Y237 22.63678.9NoYes099
51R:R:I233 R:R:Y237 30.11079.67NoYes089
52R:R:F269 R:R:I233 30.82686.28NoNo098
53R:R:H148 R:R:L163 10.820312.86NoNo088
54R:R:C236 R:R:Y150 20.35168.06NoYes067
55R:R:L239 R:R:Y150 14.66478.21NoYes047
56L:L:?1 R:R:Y203 13.033910.19YesYes104
57R:R:K280 R:R:T222 156.01YesNo065
58R:R:V265 R:R:Y324 16.16865.05NoYes079
59R:R:V265 R:R:Y237 15.07813.79NoYes079
60R:R:L239 R:R:R242 13.47013.64NoNo045
61R:R:R242 R:R:Y246 12.26895.14NoNo055
62R:R:I245 R:R:Y246 11.06126.04NoNo035
63R:R:L54 R:R:Q307 18.02413.99YesYes065
64R:R:Y110 R:R:Y111 18.574214.89YesYes155
65R:R:H277 R:R:T222 14.70384.11YesNo085
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F51 R:R:Y111 4.13 0 No Yes 3 5 2 1
R:R:F51 R:R:T115 3.89 0 No No 3 4 2 2
R:R:F51 R:R:Y303 13.41 0 No No 3 4 2 1
R:R:L54 R:R:Y111 3.52 0 Yes Yes 6 5 2 1
R:R:L54 R:R:Q307 3.99 0 Yes Yes 6 5 2 2
R:R:L107 R:R:R128 9.72 0 No Yes 7 5 2 1
R:R:Y110 R:R:Y111 14.89 1 Yes Yes 5 5 1 1
R:R:T115 R:R:Y110 4.99 0 No Yes 4 5 2 1
R:R:W117 R:R:Y110 11.58 1 Yes Yes 8 5 2 1
R:R:C202 R:R:Y110 6.72 1 Yes Yes 9 5 2 1
L:L:?1 R:R:Y110 8.74 1 Yes Yes 0 5 0 1
R:R:R310 R:R:Y111 6.17 1 Yes Yes 5 5 2 1
L:L:?1 R:R:Y111 8.01 1 Yes Yes 0 5 0 1
R:R:T115 R:R:T201 4.71 0 No Yes 4 3 2 1
R:R:C202 R:R:W117 13.06 1 Yes Yes 9 8 2 2
R:R:C202 R:R:R128 9.75 1 Yes Yes 9 5 2 1
R:R:D204 R:R:R128 13.1 1 Yes Yes 6 5 1 1
L:L:?1 R:R:R128 4.53 1 Yes Yes 0 5 0 1
R:R:D204 R:R:H132 3.78 1 Yes No 6 5 1 2
R:R:K196 R:R:R195 17.33 0 No Yes 2 1 2 1
R:R:N197 R:R:R195 7.23 0 No Yes 4 1 2 1
R:R:R195 R:R:T201 9.06 1 Yes Yes 1 3 1 1
R:R:R195 R:R:Y203 9.26 1 Yes Yes 1 4 1 1
L:L:?1 R:R:R195 11.32 1 Yes Yes 0 1 0 1
R:R:T201 R:R:Y203 19.97 1 Yes Yes 3 4 1 1
L:L:?1 R:R:T201 3.66 1 Yes Yes 0 3 0 1
L:L:?1 R:R:Y203 10.19 1 Yes Yes 0 4 0 1
R:R:D204 R:R:T205 10.12 1 Yes Yes 6 5 1 1
R:R:D204 R:R:R310 3.57 1 Yes Yes 6 5 1 2
L:L:?1 R:R:D204 14.33 1 Yes Yes 0 6 0 1
R:R:T205 R:R:T206 4.71 1 Yes No 5 5 1 2
R:R:T205 R:R:Y214 11.24 1 Yes Yes 5 4 1 2
L:L:?1 R:R:T205 10.07 1 Yes Yes 0 5 0 1
R:R:L211 R:R:T206 4.42 0 Yes No 4 5 2 2
R:R:T206 R:R:Y214 11.24 1 No Yes 5 4 2 2
R:R:L211 R:R:R287 3.64 0 Yes Yes 4 5 2 1
R:R:N283 R:R:R287 9.64 0 No Yes 4 5 2 1
R:R:Q291 R:R:R287 10.51 0 No Yes 2 5 2 1
L:L:?1 R:R:R287 10.56 1 Yes Yes 0 5 0 1
R:R:Q307 R:R:Y303 19.16 1 Yes No 5 4 2 1
L:L:?1 R:R:Y303 10.92 1 Yes No 0 4 0 1
R:R:Q307 R:R:R310 8.18 1 Yes Yes 5 5 2 2
R:R:G193 R:R:Y203 2.9 0 No Yes 2 4 2 1
L:L:?1 R:R:T45 2.75 1 Yes No 0 3 0 1
R:R:S207 R:R:Y203 1.27 0 No Yes 5 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7XXH_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.38
Number of Linked Nodes 284
Number of Links 321
Number of Hubs 44
Number of Links mediated by Hubs 158
Number of Communities 9
Number of Nodes involved in Communities 51
Number of Links involved in Communities 68
Path Summary
Number Of Nodes in MetaPath 66
Number Of Links MetaPath 65
Number of Shortest Paths 57375
Length Of Smallest Path 3
Average Path Length 13.7738
Length of Longest Path 32
Minimum Path Strength 1.38
Average Path Strength 6.65599
Maximum Path Strength 14.6825
Minimum Path Correlation 0.7
Average Path Correlation 0.930832
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 48.845
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 46.8368
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code6AD
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code6AD
Name2-(methylsulfanyl)adenosine 5'-(trihydrogen diphosphate)
Synonyms2-methylthio-adenosine-5'-diphosphate
Identifier
FormulaC11 H17 N5 O10 P2 S
Molecular Weight473.293
SMILES
PubChem121990
Formal Charge0
Total Atoms46
Total Chiral Atoms4
Total Bonds48
Total Aromatic Bonds10

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP47900
Sequence
>7XXH_nogp_Chain_R
FKCALTKTG FQFYYLPAV YILVFIIGF LGNSVAIWM FVFHMKPWS 
GISVYMFNL ALADFLYVL TLPALIFYY FNKTDWIFG DAMCKLQRF 
IFHVNLYGS ILFLTCISA HRYSGVVYP LKSLGRLKK KNAICISVL 
VWLIVVVAI SPILFYSGT GVRKNKTIT CYDTTSDEY LRSYFIYSM 
CTTVAMFCV PLVLILGCY GLIVRALIY KDLDNSPLR RKSIYLVII 
VLTVFAVSY IPFHVMKTM NLRARLDFQ TPAMCAFND RVYATYQVT 
RGLASLNSC VDPILYFLA GDTFRRRLS RATR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
4XNVANucleotideP2YP2Y1Homo sapiens-BPTU-2.22015-04-01doi.org/10.1038/nature14287
4XNWANucleotideP2YP2Y1Homo sapiensMRS2500--2.72015-04-01doi.org/10.1038/nature14287
7XXHANucleotideP2YP2Y1Homo sapiens2MeSADP-chim(NtGi1-G11)/β1/γ22.92023-06-07doi.org/10.1093/procel/pwac025
7XXH (No Gprot) ANucleotideP2YP2Y1Homo sapiens2MeSADP-2.92023-06-07doi.org/10.1093/procel/pwac025
8KGGANucleotideP2YP2Y10Homo sapiensLysophosphatidylserine (WJS)-chim(NtGi2-G13)/β1/γ23.062024-07-31doi.org/10.1016/j.chembiol.2024.08.005
8KGG (No Gprot) ANucleotideP2YP2Y10Homo sapiensLysophosphatidylserine (WJS)-3.062024-07-31doi.org/10.1016/j.chembiol.2024.08.005
8WJXANucleotideP2YP2Y1Homo sapiensADP-chim(Gs-CtGq)/β1/γ23.22024-10-02To be published
8WJX (No Gprot) ANucleotideP2YP2Y1Homo sapiensADP-3.22024-10-02To be published
9JCLANucleotideP2YP2Y1Homo sapiensADP-chim(Gs-CtGq)/β1/γ22.762025-09-10To be published
9JCL (No Gprot) ANucleotideP2YP2Y1Homo sapiensADP-2.762025-09-10To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7XXH_nogp.zip



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