Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:L17 2.7575400
2M:M:R13 6.588540
3M:M:W24 7.72857710
4R:R:V42 3.325415
5R:R:Y46 5.71618
6R:R:V60 2.4075409
7R:R:L64 3.245477
8R:R:T78 5.94426
9R:R:F79 3.72333627
10R:R:N82 4.185409
11R:R:D87 6.2575469
12R:R:W97 6.254537
13R:R:E100 7.9325405
14R:R:F105 5.67667644
15R:R:W107 8.77375839
16R:R:V122 4.29514
17R:R:Y126 4.425617
18R:R:I132 3.1825408
19R:R:L135 5.465428
20R:R:T162 5.108526
21R:R:W166 4.118509
22R:R:T173 4.36417
23R:R:R189 5.8634
24R:R:L190 2.94403
25R:R:Y204 6.376515
26R:R:I220 5.165428
27R:R:Y224 7.512529
28R:R:F230 3.7045105
29R:R:L231 3.545408
30R:R:W259 5.85143799
31R:R:F260 9.3375406
32R:R:H263 8.7575408
33R:R:W268 6.5575404
34R:R:V270 4.122506
35R:R:W279 7.58401
36R:R:F283 7.045401
37R:R:F291 5.16514
38R:R:L308 3.1285128
39R:R:Y309 8.2429
40R:R:F324 5.4525486
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:C12 L:L:L17 15.07723.17NoYes000
2L:L:L17 R:R:W279 22.24662.28YesYes001
3R:R:V272 R:R:W279 34.74167.36NoYes031
4R:R:V272 R:R:W268 36.08413.68NoYes034
5R:R:F283 R:R:W268 45.231612.03YesYes014
6R:R:F283 R:R:Q287 51.4975.86YesNo013
7M:M:S21 R:R:Q287 52.72324.33NoNo003
8M:M:S21 R:R:F291 53.94056.61NoYes004
9M:M:W24 R:R:F291 53.21553.01YesYes104
10M:M:W24 R:R:T121 10012.13YesNo006
11R:R:T121 R:R:W97 99.19454.85NoYes067
12M:M:R23 R:R:W97 38.129310NoYes007
13M:M:R23 R:R:E100 37.03749.3NoYes005
14R:R:E100 R:R:F105 69.03562.33YesYes054
15M:M:I16 R:R:F105 25.30775.02NoYes404
16M:M:I16 M:M:V15 23.41463.07NoNo000
17M:M:V15 M:M:Y11 18.25918.83NoNo000
18R:R:W107 R:R:W97 54.78184.69YesYes397
19R:R:E100 R:R:W107 39.145217.45YesYes059
20M:M:Y17 R:R:F105 12.72329.28NoYes404
21R:R:D104 R:R:F105 10.28874.78NoYes444
22M:M:Y17 R:R:T288 10.5934.99NoNo004
23M:M:W24 R:R:V122 67.0532.45YesYes104
24M:M:W24 R:R:V125 72.23543.68YesNo007
25M:M:W24 R:R:T295 29.2282.43YesNo106
26M:M:W24 R:R:H299 36.71517.41YesNo007
27R:R:T295 R:R:Y46 32.19067.49NoYes168
28R:R:L94 R:R:Y46 16.63468.21NoYes088
29R:R:G50 R:R:L94 13.68991.71NoNo068
30R:R:G50 R:R:V49 12.20411.84NoNo067
31R:R:H299 R:R:L90 35.80679NoNo077
32R:R:L90 R:R:S302 34.16877.51NoNo078
33R:R:D87 R:R:S302 33.94052.94YesNo098
34R:R:D87 R:R:P306 33.10363.22YesNo699
35R:R:P306 R:R:V60 32.13251.77NoYes099
36R:R:L64 R:R:V60 31.75212.98YesYes079
37R:R:C310 R:R:L64 21.66031.59NoYes077
38R:R:C310 R:R:V63 15.65451.71NoNo077
39R:R:L320 R:R:V63 12.59791.49NoNo077
40R:R:T173 R:R:V122 29.79643.17YesYes174
41R:R:L123 R:R:T173 29.53238.84NoYes057
42R:R:L123 R:R:W166 29.04453.42NoYes059
43R:R:N82 R:R:W166 27.34394.52YesYes099
44R:R:N82 R:R:T162 26.07745.85YesYes096
45R:R:T162 R:R:T78 16.0267.85YesYes266
46R:R:V125 R:R:W259 71.56413.68NoYes079
47R:R:F255 R:R:W259 62.81496.01NoYes099
48R:R:F255 R:R:I132 60.02242.51NoYes098
49R:R:I132 R:R:N305 22.66734.25YesNo089
50R:R:N305 R:R:Y309 19.21686.98NoYes099
51R:R:D87 R:R:L83 18.65292.71YesNo099
52R:R:L131 R:R:L83 10.07384.15NoNo089
53R:R:F105 R:R:L190 12.90677.31YesYes043
54R:R:V122 R:R:Y204 36.76443.79YesYes145
55R:R:Q205 R:R:Y204 31.79684.51NoYes055
56R:R:Q205 R:R:V270 29.08484.3NoYes056
57R:R:K273 R:R:V270 23.55346.07NoYes036
58R:R:K273 R:R:L201 19.31082.82NoNo034
59R:R:L193 R:R:L201 17.87872.77NoNo054
60R:R:G180 R:R:L193 16.43771.71NoNo055
61R:R:G180 R:R:K115 14.98775.23NoNo057
62R:R:K115 R:R:V181 13.52884.55NoNo074
63R:R:I132 R:R:I220 42.55994.42YesYes088
64R:R:I220 R:R:Y224 37.18512.42YesYes289
65R:R:V248 R:R:Y224 39.127315.14NoYes079
66R:R:V244 R:R:V248 33.18421.6NoNo077
67R:R:L231 R:R:V244 28.72684.47YesNo087
68R:R:F230 R:R:L231 16.24522.44YesYes058
69R:R:A158 R:R:T78 20.12531.68NoYes086
70R:R:A158 R:R:L153 17.34173.15NoNo087
71R:R:F195 R:R:V181 10.5846.55NoNo044
72R:R:H263 R:R:W259 16.69728.46YesYes089
73R:R:F213 R:R:H263 10.754118.1NoYes098
74R:R:L251 R:R:Y224 12.87094.69NoYes089
75R:R:L251 R:R:Y309 11.30459.38NoYes089
76R:R:L251 R:R:L308 17.88774.15NoYes088
77R:R:F79 R:R:L135 11.27323.65YesYes278
78R:R:L83 R:R:N305 14.370113.73NoNo099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:S18 R:R:V277 3.23 0 No No 0 1 0 1
M:M:Y11 R:R:C186 4.03 0 No No 0 2 0 1
M:M:R13 R:R:D104 7.15 4 Yes No 0 4 0 1
M:M:R13 R:R:F105 5.34 4 Yes Yes 0 4 0 1
M:M:I16 R:R:F105 5.02 4 No Yes 0 4 0 1
M:M:Y17 R:R:F105 9.28 4 No Yes 0 4 0 1
M:M:Y17 R:R:T288 4.99 4 No No 0 4 0 1
M:M:S21 R:R:Q287 4.33 0 No No 0 3 0 1
M:M:S21 R:R:F291 6.61 0 No Yes 0 4 0 1
M:M:R23 R:R:W97 10 0 No Yes 0 7 0 1
M:M:R23 R:R:E100 9.3 0 No Yes 0 5 0 1
M:M:W24 R:R:T121 12.13 1 Yes No 0 6 0 1
M:M:W24 R:R:V122 2.45 1 Yes Yes 0 4 0 1
M:M:W24 R:R:V125 3.68 1 Yes No 0 7 0 1
M:M:W24 R:R:R208 22.99 1 Yes No 0 5 0 1
M:M:W24 R:R:F291 3.01 1 Yes Yes 0 4 0 1
M:M:W24 R:R:T295 2.43 1 Yes No 0 6 0 1
M:M:W24 R:R:H299 7.41 1 Yes No 0 7 0 1
R:R:D104 R:R:R39 3.57 4 No No 4 4 1 2
R:R:T295 R:R:Y46 7.49 1 No Yes 6 8 1 2
R:R:H299 R:R:L90 9 0 No No 7 7 1 2
R:R:W107 R:R:W97 4.69 3 Yes Yes 9 7 2 1
R:R:V117 R:R:W97 4.9 3 No Yes 5 7 2 1
R:R:L118 R:R:W97 6.83 0 No Yes 5 7 2 1
R:R:T121 R:R:W97 4.85 0 No Yes 6 7 1 1
R:R:E100 R:R:L103 2.65 0 Yes No 5 4 1 2
R:R:E100 R:R:F105 2.33 0 Yes Yes 5 4 1 1
R:R:E100 R:R:W107 17.45 0 Yes Yes 5 9 1 2
R:R:D104 R:R:F105 4.78 4 No Yes 4 4 1 1
R:R:F105 R:R:L190 7.31 4 Yes Yes 4 3 1 1
R:R:V117 R:R:W107 4.9 3 No Yes 5 9 2 2
R:R:V122 R:R:Y126 2.52 1 Yes Yes 4 7 1 2
R:R:T173 R:R:V122 3.17 1 Yes Yes 7 4 2 1
R:R:T176 R:R:V122 9.52 1 No Yes 4 4 2 1
R:R:V122 R:R:Y204 3.79 1 Yes Yes 4 5 1 2
R:R:V125 R:R:W259 3.68 0 No Yes 7 9 1 2
R:R:T173 R:R:Y126 3.75 1 Yes Yes 7 7 2 2
R:R:R208 R:R:Y126 3.09 0 No Yes 5 7 1 2
R:R:T176 R:R:Y204 8.74 1 No Yes 4 5 2 2
R:R:F291 R:R:V265 2.62 1 Yes No 4 4 1 2
R:R:V272 R:R:W279 7.36 0 No Yes 3 1 2 1
R:R:V277 R:R:W279 11.03 0 No Yes 1 1 1 1
R:R:W279 R:R:Y284 9.65 0 Yes No 1 3 1 2
R:R:F283 R:R:Q287 5.86 0 Yes No 1 3 2 1
R:R:T288 R:R:Y289 11.24 0 No No 4 1 1 2
R:R:F291 R:R:P292 5.78 1 Yes No 4 4 1 2
R:R:F291 R:R:T295 7.78 1 Yes No 4 6 1 1
L:L:L17 R:R:W279 2.28 0 Yes Yes 0 1 0 1
R:R:C186 R:R:G187 1.96 0 No No 2 5 1 2
M:M:A20 R:R:L190 1.58 0 No Yes 0 3 0 1
L:L:M14 R:R:V277 1.52 0 No No 0 1 0 1
R:R:L190 R:R:V188 1.49 0 Yes No 3 3 1 2
R:R:L190 R:R:L192 1.38 0 Yes No 3 3 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7YJ4_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.33
Number of Linked Nodes 300
Number of Links 336
Number of Hubs 40
Number of Links mediated by Hubs 164
Number of Communities 12
Number of Nodes involved in Communities 61
Number of Links involved in Communities 76
Path Summary
Number Of Nodes in MetaPath 79
Number Of Links MetaPath 78
Number of Shortest Paths 58628
Length Of Smallest Path 3
Average Path Length 13.3416
Length of Longest Path 28
Minimum Path Strength 1.17
Average Path Strength 5.48724
Maximum Path Strength 17.56
Minimum Path Correlation 0.7
Average Path Correlation 0.941644
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 56.1353
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.1014
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • WD40 repeat-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • WD40 repeat-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDU9
Sequence
>7YJ4_nogp_Chain_R
FLALRLMVA LAYGLVGAI GLLGNLAVL WVLSGPPSD TFVFNLALA 
DLGLALTLP FWAAESALD FHWPFGGAL CKMVLTATV LNVYASIFL 
ITALSVARY WVVAMAAGP GTHLSLFWA RIATLAVWA AAALVTVPT 
AVFGVEGEV CGVRLCLLR FPSRYWLGA YQLQRVVLA FMVPLGVIT 
TSYLLLLAF LQRRQRRRQ DSRVVARSV RILVASFFL CWFPNHVVT 
LWGVLVKFD LVPWNSTFY TIQTYVFPV TTCLAHSNS CLNPVLYCL 
LRREPRQAL AGTFR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7YK7APeptideRelaxinRXFP4Homo sapiensDC591053-Gi2/β1/γ22.752023-03-0110.1038/s41467-023-36182-z
7YK7 (No Gprot) APeptideRelaxinRXFP4Homo sapiensDC591053-2.752023-03-0110.1038/s41467-023-36182-z
7YK6APeptideRelaxinRXFP4Homo sapiensPubChem 138319674-Gi2/β1/γ23.032023-03-0110.1038/s41467-023-36182-z
7YK6 (No Gprot) APeptideRelaxinRXFP4Homo sapiensPubChem 138319674-3.032023-03-0110.1038/s41467-023-36182-z
7YJ4APeptideRelaxinRXFP4Homo sapiensINSL5-Gi2/β1/γ23.192023-03-0110.1038/s41467-023-36182-z
7YJ4 (No Gprot) APeptideRelaxinRXFP4Homo sapiensINSL5-3.192023-03-0110.1038/s41467-023-36182-z




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7YJ4_nogp.zip



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