Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:Y22 10.968530
2L:L:F27 7.9025430
3L:L:F29 5.27510
4L:L:S30 6.2125410
5R:R:Y47 4.678508
6R:R:W77 6.12167607
7R:R:L81 6.5175429
8R:R:D85 8.28429
9R:R:F88 5.12857718
10R:R:L92 5.315418
11R:R:Y98 5.9375405
12R:R:Y103 5.6025404
13R:R:W105 10.392559
14R:R:F107 7.096508
15R:R:I120 5.215414
16R:R:H121 4.714565
17R:R:M123 5.7525418
18R:R:T125 6.9925467
19R:R:I133 4.87429
20R:R:D136 7.925448
21R:R:R151 10.305446
22R:R:F168 4.9725403
23R:R:F177 8.204514
24R:R:F190 9.975403
25R:R:N191 7.455415
26R:R:F193 13.2625415
27R:R:D210 5.3425404
28R:R:V220 5405
29R:R:R224 6.78415
30R:R:P232 3.655409
31R:R:Y240 8.95629
32R:R:K246 4.245405
33R:R:F259 5.075407
34R:R:I261 3.4125408
35R:R:I265 7.355428
36R:R:F269 7.01419
37R:R:W273 7.412519
38R:R:Y276 7.0375416
39R:R:E283 6.6875434
40R:R:L284 5.8425405
41R:R:F294 6.685435
42R:R:I306 5.045417
43R:R:N312 8.505429
44R:R:Y316 6.31629
45R:R:Q321 7.404505
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:Q26 L:L:Y22 11.57636.76NoYes300
2L:L:Y22 R:R:E283 31.720511.22YesYes304
3L:L:F23 R:R:F190 10.284815NoYes003
4L:L:Q26 R:R:F190 11.721212.88NoYes003
5L:L:F27 R:R:Y103 19.01669.28YesYes004
6L:L:F29 R:R:Y276 10.70695.16YesYes106
7R:R:N280 R:R:Y276 43.517310.47NoYes056
8R:R:E283 R:R:N280 42.81485.26YesNo045
9L:L:F29 R:R:I120 57.94433.77YesYes104
10R:R:M123 R:R:Y276 37.67095.99YesYes186
11L:L:S30 R:R:I120 44.05594.64YesYes104
12L:L:S30 R:R:S174 13.97666.52YesNo005
13L:L:S30 R:R:N191 30.31564.47YesYes105
14R:R:I120 R:R:R224 13.91366.26YesYes145
15R:R:F88 R:R:M123 34.43274.98YesYes188
16R:R:F88 R:R:I306 14.14675.02YesYes187
17R:R:I306 R:R:V50 10.58094.61YesNo077
18R:R:I120 R:R:S171 13.3566.19YesNo047
19R:R:H121 R:R:S171 12.0965.58YesNo057
20R:R:F168 R:R:H121 21.59333.39YesYes035
21R:R:F117 R:R:F168 16.94396.43NoYes053
22R:R:F117 R:R:L118 13.39073.65NoNo055
23R:R:F91 R:R:L118 10.99049.74NoNo065
24R:R:F88 R:R:N122 18.61656.04YesNo088
25R:R:H121 R:R:N122 17.87943.83YesNo058
26R:R:M123 R:R:W273 1005.82YesYes189
27R:R:F269 R:R:W273 93.920510.02YesYes199
28R:R:F269 R:R:I236 95.86727.54YesNo098
29R:R:I236 R:R:S134 95.55537.74NoNo089
30R:R:S134 R:R:Y240 95.237215.26NoYes099
31R:R:Y240 R:R:Y316 55.05893.97YesYes299
32R:R:L130 R:R:Y316 18.32047.03NoYes289
33R:R:L130 R:R:L81 11.57634.15NoYes289
34R:R:F78 R:R:Y316 18.13144.13NoYes289
35R:R:F78 R:R:V317 19.03555.24NoNo087
36R:R:Q321 R:R:V317 16.385.73YesNo057
37R:R:R137 R:R:Y240 22.339810.29NoYes299
38R:R:I133 R:R:R137 21.70043.76YesNo299
39R:R:I133 R:R:W77 44.96314.7YesYes097
40R:R:I133 R:R:Y316 23.26287.25YesYes299
41R:R:D136 R:R:W77 21.675211.17YesYes087
42R:R:Y103 R:R:Y98 15.54534.96YesYes045
43R:R:W105 R:R:Y98 15.639810.61YesYes095
44R:R:F107 R:R:W105 14.058515.03YesYes089
45R:R:F107 R:R:I94 23.17463.77YesNo086
46R:R:I94 R:R:S115 24.56066.19NoNo065
47R:R:F107 R:R:V106 25.17177.87YesNo083
48R:R:H104 R:R:V106 18.9632.77NoNo053
49R:R:H104 R:R:I187 16.88096.63NoNo055
50R:R:N116 R:R:S115 25.96554.47NoNo065
51R:R:R178 R:R:S174 13.22373.95NoNo055
52R:R:N191 R:R:R178 15.96118.44YesNo055
53R:R:N116 R:R:R178 27.455416.87NoNo065
54R:R:D136 R:R:S140 16.49664.42YesNo487
55R:R:I262 R:R:Y240 21.55238.46NoYes089
56R:R:I243 R:R:I262 14.3642.94NoNo088
57R:R:C138 R:R:I243 11.14793.27NoNo088
58R:R:S140 R:R:S147 14.76414.89NoNo074
59R:R:I139 R:R:S147 12.94023.1NoNo054
60R:R:I139 R:R:L143 11.11014.28NoNo056
61R:R:R224 R:R:V220 12.40795.23YesYes055
62R:R:F193 R:R:N191 10.294212.08YesYes155
63R:R:I187 R:R:T180 10.59663.04NoNo054
64R:R:F193 R:R:H217 17.958218.1YesNo054
65R:R:H217 R:R:L284 14.06486.43NoYes045
66L:L:F27 L:L:Y22 18.298410.32YesYes300
67L:L:F29 R:R:M123 47.09576.22YesYes108
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:Y22 R:R:E283 11.22 3 Yes Yes 0 4 0 1
L:L:Y22 R:R:H286 14.16 3 Yes No 0 2 0 1
L:L:Y22 R:R:F294 12.38 3 Yes Yes 0 5 0 1
L:L:F23 R:R:L183 3.65 0 No No 0 1 0 1
L:L:F23 R:R:F190 15 0 No Yes 0 3 0 1
L:L:Q26 R:R:F190 12.88 3 No Yes 0 3 0 1
L:L:F27 R:R:Y103 9.28 3 Yes Yes 0 4 0 1
L:L:F29 R:R:L119 7.31 1 Yes No 0 6 0 1
L:L:F29 R:R:I120 3.77 1 Yes Yes 0 4 0 1
L:L:F29 R:R:M123 6.22 1 Yes Yes 0 8 0 1
L:L:F29 R:R:Y276 5.16 1 Yes Yes 0 6 0 1
L:L:F29 R:R:T302 3.89 1 Yes No 0 6 0 1
L:L:S30 R:R:I120 4.64 1 Yes Yes 0 4 0 1
L:L:S30 R:R:S174 6.52 1 Yes No 0 5 0 1
L:L:S30 R:R:N191 4.47 1 Yes Yes 0 5 0 1
L:L:S30 R:R:R224 9.22 1 Yes Yes 0 5 0 1
R:R:T302 R:R:Y47 4.99 0 No Yes 6 8 1 2
R:R:F88 R:R:L119 7.31 1 Yes No 8 6 2 1
R:R:F88 R:R:M123 4.98 1 Yes Yes 8 8 2 1
R:R:Y103 R:R:Y98 4.96 0 Yes Yes 4 5 1 2
R:R:S188 R:R:Y98 3.82 0 No Yes 4 5 2 2
R:R:A99 R:R:Y103 4 0 No Yes 5 4 2 1
R:R:P299 R:R:Y103 4.17 0 No Yes 3 4 2 1
R:R:I120 R:R:S171 6.19 1 Yes No 4 7 1 2
R:R:I120 R:R:R224 6.26 1 Yes Yes 4 5 1 1
R:R:M123 R:R:W273 5.82 1 Yes Yes 8 9 1 2
R:R:M123 R:R:Y276 5.99 1 Yes Yes 8 6 1 1
R:R:F124 R:R:S171 5.28 0 No No 7 7 2 2
R:R:F124 R:R:R224 6.41 0 No Yes 7 5 2 1
R:R:R178 R:R:S174 3.95 0 No No 5 5 2 1
R:R:F177 R:R:N191 4.83 1 Yes Yes 4 5 2 1
R:R:F177 R:R:F193 15 1 Yes Yes 4 5 2 2
R:R:N191 R:R:R178 8.44 1 Yes No 5 5 1 2
R:R:H184 R:R:L183 6.43 0 No No 2 1 2 1
R:R:F190 R:R:S188 9.25 0 Yes No 3 4 1 2
R:R:F193 R:R:N191 12.08 1 Yes Yes 5 5 2 1
R:R:F193 R:R:H217 18.1 1 Yes No 5 4 2 1
R:R:F193 R:R:V220 7.87 1 Yes Yes 5 5 2 2
R:R:H217 R:R:L284 6.43 0 No Yes 4 5 1 2
R:R:R224 R:R:V220 5.23 1 Yes Yes 5 5 1 2
R:R:H277 R:R:Y276 6.53 0 No Yes 8 6 2 1
R:R:N280 R:R:Y276 10.47 0 No Yes 5 6 2 1
R:R:L279 R:R:L298 9.69 0 No No 4 4 2 1
R:R:E283 R:R:N280 5.26 3 Yes No 4 5 1 2
R:R:E283 R:R:F294 7 3 Yes Yes 4 5 1 1
R:R:H286 R:R:T287 5.48 0 No No 2 1 1 2
R:R:F294 R:R:L298 4.87 3 Yes No 5 4 1 1
L:L:G25 R:R:E283 3.27 0 No Yes 0 4 0 1
L:L:P24 R:R:H217 3.05 0 No No 0 4 0 1
R:R:L296 R:R:S295 3 0 No No 1 4 2 1
R:R:A181 R:R:F190 2.77 0 No Yes 2 3 2 1
L:L:F27 R:R:S295 2.64 3 Yes No 0 4 0 1
R:R:F294 R:R:M289 2.49 3 Yes No 5 3 1 2
L:L:A28 R:R:L298 1.58 0 No No 0 4 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7YKD_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.53
Number of Linked Nodes 279
Number of Links 309
Number of Hubs 45
Number of Links mediated by Hubs 157
Number of Communities 7
Number of Nodes involved in Communities 45
Number of Links involved in Communities 57
Path Summary
Number Of Nodes in MetaPath 68
Number Of Links MetaPath 67
Number of Shortest Paths 58066
Length Of Smallest Path 3
Average Path Length 14.6779
Length of Longest Path 34
Minimum Path Strength 1.23
Average Path Strength 6.63474
Maximum Path Strength 16.55
Minimum Path Correlation 0.7
Average Path Correlation 0.925956
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 44.7731
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 50.3258
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ99788
Sequence
>7YKD_nogp_Chain_R
LEARVTRIF LVVVYSIVC FLGILGNGL VIIIATFKM KKTVNMVWF 
LNLAVADFL FNVFLPIHI TYAAMDYHW VFGTAMCKI SNFLLIHNM 
FTSVFLLTI ISSDRCISV LLPVWSQNH RSVRLAYMA CMVIWVLAF 
FLSSPSLVF RDTANLHGK ISCFNNFSL SDPVGYSRH MVVTVTRFL 
CGFLVPVLI ITACYLTIV CKLQRNRLA KTKKPFKII VTIIITFFL 
CWCPYHTLN LLELHHTAM PGSVFSLGL PLATALAIA NSCMNPILY 
VFMGQDFKK FKV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7YKDAProteinChemerinCML1Homo sapiensChemerin-9-Gi1/β1/γ22.812023-04-19doi.org/10.1073/pnas.2214324120
7YKD (No Gprot) AProteinChemerinCML1Homo sapiensChemerin-9-2.812023-04-19doi.org/10.1073/pnas.2214324120
8SG1AProteinChemerinCML1Homo sapiensChemerin-9-Gi1/β1/γ22.942023-11-01doi.org/10.1371/journal.pbio.3002188
8SG1 (No Gprot) AProteinChemerinCML1Homo sapiensChemerin-9-2.942023-11-01doi.org/10.1371/journal.pbio.3002188
8ZJGAProteinChemerinCML1Homo sapiensChemerin-Gi1/β1/γ23.182025-01-22doi.org/10.1038/s42003-024-07228-9
8ZJG (No Gprot) AProteinChemerinCML1Homo sapiensChemerin-3.182025-01-22doi.org/10.1038/s42003-024-07228-9
9L3WAProteinChemerinCML1Homo sapiensRetinoic acid receptor responder protein 2-Gi1/β1/γ23.52025-03-12doi.org/10.1093/procel/pwae073
9L3W (No Gprot) AProteinChemerinCML1Homo sapiensRetinoic acid receptor responder protein 2-3.52025-03-12doi.org/10.1093/procel/pwae073
9L3ZAProteinChemerinCML1Homo sapiensLRH7-C2--3.92025-03-12doi.org/10.1093/procel/pwae073




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Download 7YKD_nogp.zip



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