Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:F154 8.5975446
2R:R:Y47 5.7925408
3R:R:M75 5.665478
4R:R:W77 5.005607
5R:R:F78 3.61408
6R:R:D85 7.186509
7R:R:F88 5.185408
8R:R:N89 3.95406
9R:R:I96 2.91467
10R:R:Y103 8.1025404
11R:R:W105 9.00333639
12R:R:F107 10.2825438
13R:R:T109 2.6775403
14R:R:F117 7.812595
15R:R:F124 5.2775407
16R:R:C138 4.2754108
17R:R:W164 6.38409
18R:R:R178 10.59405
19R:R:F190 7.7475403
20R:R:N191 6.0975455
21R:R:F193 8.724505
22R:R:R216 3.76404
23R:R:H217 9.536514
24R:R:R224 4.2775405
25R:R:F229 5.116529
26R:R:Y240 7.2725409
27R:R:W273 6.96629
28R:R:C274 4.8575426
29R:R:Y276 5.165406
30R:R:F294 3.7505
31R:R:Y316 6.154589
32R:R:F318 7.725406
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:T109 R:R:T180 10.68423.14YesNo034
2R:R:C112 R:R:T180 11.83953.38NoNo094
3R:R:W105 R:R:Y98 17.671611.58YesNo095
4R:R:E283 R:R:F294 13.06553.5NoYes045
5R:R:E283 R:R:H217 13.6587.39NoYes144
6R:R:F193 R:R:H217 24.032918.1YesYes054
7L:L:S157 R:R:N191 41.17918.94NoYes555
8L:L:F156 R:R:H95 12.00349.05NoNo096
9R:R:H95 R:R:Y98 13.18486.53NoNo065
10R:R:F193 R:R:V220 32.16442.62YesNo055
11R:R:R224 R:R:V220 32.80542.62YesNo055
12R:R:F124 R:R:R224 85.19424.28YesYes075
13R:R:F124 R:R:M123 88.32456.22YesNo078
14R:R:M123 R:R:W273 88.74194.65NoYes089
15R:R:V127 R:R:W273 95.78523.68NoYes079
16R:R:P232 R:R:V127 96.03863.53NoNo097
17R:R:P232 R:R:T131 96.02373.5NoNo097
18R:R:I236 R:R:T131 97.19393.04NoNo087
19R:R:I236 R:R:S134 97.40254.64NoNo089
20R:R:S134 R:R:Y240 1006.36NoYes099
21R:R:R137 R:R:Y240 54.09938.23NoYes099
22R:R:R137 R:R:Y316 43.76916.17NoYes899
23R:R:L130 R:R:Y316 65.17858.21NoYes089
24R:R:L130 R:R:N312 63.96364.12NoNo089
25R:R:D85 R:R:N312 62.71896.73YesNo099
26R:R:D85 R:R:S309 40.20655.89YesNo099
27R:R:N89 R:R:S309 38.75315.96YesNo069
28R:R:F88 R:R:N89 31.37443.62YesYes086
29R:R:F88 R:R:I306 25.33733.77YesNo087
30R:R:I306 R:R:L92 19.18094.28NoNo078
31R:R:I96 R:R:L92 14.41834.28YesNo678
32R:R:I265 R:R:Y240 46.00886.04NoYes089
33R:R:I265 R:R:Y316 44.80148.46NoYes089
34R:R:D85 R:R:N58 23.809313.46YesNo099
35R:R:N58 R:R:P313 22.2749.77NoNo099
36R:R:F78 R:R:Y316 33.25263.09YesYes089
37R:R:F78 R:R:M75 25.94842.49YesYes088
38R:R:D322 R:R:M75 19.91884.16NoYes768
39R:R:D322 R:R:I64 18.58464.2NoNo067
40R:R:I64 R:R:K68 17.20952.91NoNo074
41R:R:F67 R:R:K68 12.60717.44NoNo054
42R:R:I133 R:R:R137 10.05075.01NoNo899
43R:R:I133 R:R:W77 12.80474.7NoYes097
44R:R:I120 R:R:R224 19.76226.26NoYes045
45R:R:I120 R:R:S171 18.65923.1NoNo047
46R:R:F107 R:R:W105 10.561223.05YesYes389
47R:R:C189 R:R:W105 29.44775.22NoYes399
48R:R:C189 R:R:R178 41.64876.96NoYes095
49R:R:C239 R:R:S134 21.77095.16NoNo079
50R:R:C138 R:R:C239 11.79857.28YesNo087
51R:R:I262 R:R:Y240 14.00838.46NoYes089
52R:R:I262 R:R:V244 12.953.07NoNo085
53R:R:F259 R:R:V244 11.80223.93NoNo075
54R:R:F318 R:R:P313 12.90534.33YesNo069
55R:R:N191 R:R:R178 44.24248.44YesYes055
56R:R:C112 R:R:C189 11.33267.28NoNo399
57L:L:S157 R:R:R224 42.64373.95NoYes055
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:Y149 R:R:F294 7.22 4 No Yes 5 5 0 1
L:L:F150 R:R:F190 18.22 0 No Yes 4 3 0 1
L:L:P151 R:R:H217 7.63 1 No Yes 9 4 0 1
L:L:P151 R:R:E283 4.72 1 No No 9 4 0 1
L:L:P151 R:R:H286 7.63 1 No No 9 2 0 1
L:L:G152 R:R:N191 3.39 5 No Yes 9 5 0 1
L:L:F154 R:R:Y103 12.38 4 Yes Yes 6 4 0 1
L:L:F154 R:R:S295 5.28 4 Yes No 6 4 0 1
L:L:A155 R:R:L298 3.15 0 No No 9 4 0 1
L:L:F156 R:R:H95 9.05 0 No No 9 6 0 1
L:L:F156 R:R:Y276 6.19 0 No Yes 9 6 0 1
L:L:F156 R:R:T302 3.89 0 No No 9 6 0 1
L:L:S157 R:R:N191 8.94 5 No Yes 5 5 0 1
L:L:S157 R:R:R224 3.95 5 No Yes 5 5 0 1
R:R:H95 R:R:Y98 6.53 0 No No 6 5 1 2
R:R:Y103 R:R:Y98 11.91 0 Yes No 4 5 1 2
R:R:A99 R:R:Y103 5.34 0 No Yes 5 4 2 1
R:R:I120 R:R:R224 6.26 0 No Yes 4 5 2 1
R:R:F124 R:R:R224 4.28 0 Yes Yes 7 5 2 1
R:R:N191 R:R:R178 8.44 5 Yes Yes 5 5 1 2
R:R:F190 R:R:S188 3.96 0 Yes No 3 4 1 2
R:R:F190 R:R:N192 6.04 0 Yes No 3 2 1 2
R:R:F193 R:R:N191 3.62 0 Yes Yes 5 5 2 1
R:R:F193 R:R:H217 18.1 0 Yes Yes 5 4 2 1
R:R:H217 R:R:T221 6.85 1 Yes No 4 6 1 2
R:R:E283 R:R:H217 7.39 1 No Yes 4 4 1 1
R:R:H217 R:R:L284 7.71 1 Yes No 4 5 1 2
R:R:N280 R:R:Y276 10.47 0 No Yes 5 6 2 1
R:R:L279 R:R:L298 4.15 0 No No 4 4 2 1
R:R:F294 R:R:L282 3.65 0 Yes No 5 5 1 2
R:R:E283 R:R:F294 3.5 1 No Yes 4 5 1 1
R:R:P299 R:R:Y103 2.78 0 No Yes 3 4 2 1
R:R:A181 R:R:F190 2.77 0 No Yes 2 3 2 1
R:R:H286 R:R:T287 2.74 0 No No 2 1 1 2
L:L:A155 R:R:Y276 2.67 0 No Yes 9 6 0 1
R:R:F193 R:R:V220 2.62 0 Yes No 5 5 2 2
R:R:R224 R:R:V220 2.62 0 Yes No 5 5 1 2
R:R:F294 R:R:V293 2.62 0 Yes No 5 1 1 2
R:R:F294 R:R:G291 1.51 0 Yes No 5 2 1 2
R:R:A305 R:R:Y276 1.33 0 No Yes 8 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8SG1_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.04
Number of Linked Nodes 268
Number of Links 283
Number of Hubs 32
Number of Links mediated by Hubs 128
Number of Communities 10
Number of Nodes involved in Communities 38
Number of Links involved in Communities 42
Path Summary
Number Of Nodes in MetaPath 58
Number Of Links MetaPath 57
Number of Shortest Paths 45500
Length Of Smallest Path 3
Average Path Length 17.1835
Length of Longest Path 38
Minimum Path Strength 1.39
Average Path Strength 5.55886
Maximum Path Strength 17.315
Minimum Path Correlation 0.7
Average Path Correlation 0.925789
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 44.9791
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 35.3579
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainL
ProteinChemerin-9
UniProtQ99969
Sequence
>8SG1_nogp_Chain_L
YFPGQFAFS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainR
ProteinReceptor
UniProtQ99788
Sequence
>8SG1_nogp_Chain_R
ARVTRIFLV VVYSIVCFL GILGNGLVI IIATFKMKK TVNMVWFLN 
LAVADFLFN VFLPIHITY AAMDYHWVF GTAMCKISN FLLIHNMFT 
SVFLLTIIS SDRCISVLL PVWSQNHRS VRLAYMACM VIWVLAFFL 
SSPSLVFRD TANLHGKIS CFNNFSLSD PVGYSRHMV VTVTRFLCG 
FLVPVLIIT ACYLTIVCK LQRNRLAKT KKPFKIIVT IIITFFLCW 
CPYHTLNLL ELHHTAMPG SVFSLGLPL ATALAIANS CMNPILYVF 
MGQDFKKFK


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7YKDAProteinChemerinCML1Homo sapiensChemerin-9-Gi1/β1/γ22.812023-04-19doi.org/10.1073/pnas.2214324120
7YKD (No Gprot) AProteinChemerinCML1Homo sapiensChemerin-9-2.812023-04-19doi.org/10.1073/pnas.2214324120
8SG1AProteinChemerinCML1Homo sapiensChemerin-9-Gi1/β1/γ22.942023-11-01doi.org/10.1371/journal.pbio.3002188
8SG1 (No Gprot) AProteinChemerinCML1Homo sapiensChemerin-9-2.942023-11-01doi.org/10.1371/journal.pbio.3002188
8ZJGAProteinChemerinCML1Homo sapiensChemerin-Gi1/β1/γ23.182025-01-22doi.org/10.1038/s42003-024-07228-9
8ZJG (No Gprot) AProteinChemerinCML1Homo sapiensChemerin-3.182025-01-22doi.org/10.1038/s42003-024-07228-9
9L3WAProteinChemerinCML1Homo sapiensChemerin-Gi1/β1/γ23.52025-03-12doi.org/10.1093/procel/pwae073
9L3W (No Gprot) AProteinChemerinCML1Homo sapiensChemerin-3.52025-03-12doi.org/10.1093/procel/pwae073
9L3ZAProteinChemerinCML1Homo sapiensLRH7-C2--3.92025-03-12doi.org/10.1093/procel/pwae073




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8SG1_nogp.zip



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