Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 11.33910
2R:R:L33 5.04407
3R:R:L57 5.986528
4R:R:H62 8.1425428
5R:R:Y64 6.146508
6R:R:D72 7.04519
7R:R:L75 5.335408
8R:R:V79 4.908518
9R:R:L80 7.1225418
10R:R:W92 7.932518
11R:R:F94 4.275405
12R:R:W102 5.13715
13R:R:D106 7.4675417
14R:R:L117 5.085418
15R:R:D123 6.9275439
16R:R:R124 7.1575419
17R:R:Y125 9.1425408
18R:R:Y130 3.495406
19R:R:Y134 7.028537
20R:R:V138 5.216536
21R:R:I159 2.9925404
22R:R:P161 7.32417
23R:R:R166 6.8475415
24R:R:I175 4.6775445
25R:R:N179 9.95415
26R:R:Y184 8.646518
27R:R:F193 10.13518
28R:R:Y204 6.914509
29R:R:Y208 5.348555
30R:R:F281 4.112519
31R:R:W285 7.59875818
32R:R:F288 10.576517
33R:R:F289 7.80667617
34R:R:M292 4.305407
35R:R:P303 5.39404
36R:R:F312 8.175416
37R:R:W313 7.9725416
38R:R:Y316 10.4271717
39R:R:N322 5.56519
40R:R:Y326 5.746519
41R:R:F333 6.486528
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y316 21.595910.5YesYes107
2R:R:W313 R:R:Y316 11.725611.58YesYes167
3R:R:L80 R:R:Y316 16.968516.41YesYes187
4L:L:?1 R:R:W285 79.723710.2YesYes108
5R:R:N318 R:R:W285 14.90947.91NoYes098
6R:R:N318 R:R:N322 12.71316.81NoYes099
7R:R:D72 R:R:N322 16.29546.73YesYes199
8R:R:D72 R:R:N44 14.47556.73YesNo099
9R:R:F281 R:R:W285 79.83884.01YesYes198
10R:R:F281 R:R:I200 98.37053.77YesNo098
11R:R:I200 R:R:S121 98.12254.64NoNo089
12R:R:M203 R:R:S121 1003.07NoNo069
13R:R:M203 R:R:Y125 99.406615.57NoYes068
14R:R:I126 R:R:Y125 92.07373.63NoYes058
15R:R:I126 R:R:V138 89.0363.07NoYes056
16R:R:D123 R:R:V138 41.09734.38YesYes396
17R:R:D123 R:R:T61 31.09867.23YesNo398
18R:R:S59 R:R:T61 58.89833.2NoNo078
19R:R:H62 R:R:S59 56.71089.76YesNo087
20R:R:F333 R:R:H62 41.030910.18YesYes288
21R:R:F333 R:R:P327 34.86254.33YesNo287
22R:R:P327 R:R:V47 32.63965.3NoNo079
23R:R:F337 R:R:V47 23.6863.93NoNo079
24R:R:V138 R:R:Y134 32.657313.88YesYes367
25R:R:T61 R:R:Y134 29.69054.99NoYes387
26R:R:F337 R:R:S50 16.67185.28NoNo078
27R:R:V138 R:R:V60 15.96783.21YesNo067
28R:R:V60 R:R:Y64 11.40685.05NoYes078
29R:R:D123 R:R:Y64 12.41646.9YesYes098
30R:R:I119 R:R:Y64 11.734512.09NoYes078
31R:R:F281 R:R:L117 19.98413.65YesYes198
32L:L:?1 R:R:D106 50.71517.73YesYes107
33R:R:D106 R:R:W102 47.88113.35YesYes175
34R:R:W102 R:R:W92 26.081611.25YesYes158
35R:R:C99 R:R:W92 17.5536.53NoYes198
36R:R:C99 R:R:R96 32.09052.79NoNo095
37R:R:I175 R:R:R96 26.82992.51YesNo055
38R:R:D172 R:R:I175 18.87267NoYes035
39R:R:D172 R:R:T174 16.20258.67NoNo031
40R:R:T174 R:R:Y91 13.52342.5NoNo014
41R:R:C176 R:R:W102 18.2043.92NoYes195
42R:R:C176 R:R:C99 17.15017.28NoNo199
43L:L:?1 R:R:Y184 38.86994.77YesYes108
44R:R:S188 R:R:Y184 13.32425.09NoYes078
45R:R:I157 R:R:S188 10.72936.19NoNo067
46R:R:N322 R:R:Y326 11.32714.65YesYes199
47R:R:R124 R:R:Y326 11.3676.17YesYes199
48R:R:S121 R:R:Y204 30.301612.72NoYes099
49R:R:L274 R:R:Y204 15.32573.52NoYes099
50R:R:N179 R:R:Y184 11.269511.63YesYes158
51L:L:?1 R:R:F289 11.84964.96YesYes107
52R:R:F193 R:R:F289 13.315320.36YesYes187
53R:R:F193 R:R:L286 23.01734.87YesNo087
54R:R:L286 R:R:P287 20.42243.28NoNo079
55R:R:P287 R:R:V311 17.79213.53NoNo095
56R:R:V291 R:R:V311 16.45936.41NoNo055
57R:R:P303 R:R:V291 15.1221.77YesNo045
58R:R:F193 R:R:F281 16.4775.36YesYes189
59R:R:R124 R:R:Y204 10.12718.23YesYes099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D106 7.73 1 Yes Yes 0 7 0 1
L:L:?1 R:R:V107 12.13 1 Yes No 0 6 0 1
L:L:?1 R:R:C110 9.04 1 Yes No 0 6 0 1
L:L:?1 R:R:Y184 4.77 1 Yes Yes 0 8 0 1
L:L:?1 R:R:W285 10.2 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F288 26.77 1 Yes Yes 0 7 0 1
L:L:?1 R:R:F289 4.96 1 Yes Yes 0 7 0 1
L:L:?1 R:R:F312 15.87 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Y316 10.5 1 Yes Yes 0 7 0 1
R:R:L75 R:R:V79 5.96 0 Yes Yes 8 8 2 2
R:R:C110 R:R:L75 4.76 1 No Yes 6 8 1 2
R:R:L75 R:R:Y316 5.86 0 Yes Yes 8 7 2 1
R:R:V79 R:R:W102 4.9 1 Yes Yes 8 5 2 2
R:R:D106 R:R:V79 7.3 1 Yes Yes 7 8 1 2
R:R:L80 R:R:W313 3.42 1 Yes Yes 8 6 2 2
R:R:L80 R:R:Y316 16.41 1 Yes Yes 8 7 2 1
R:R:S83 R:R:W102 6.18 0 No Yes 7 5 2 2
R:R:S83 R:R:Y316 8.9 0 No Yes 7 7 2 1
R:R:D106 R:R:W102 3.35 1 Yes Yes 7 5 1 2
R:R:D106 R:R:Y316 11.49 1 Yes Yes 7 7 1 1
R:R:S158 R:R:V107 3.23 0 No No 8 6 2 1
R:R:C110 R:R:W285 5.22 1 No Yes 6 8 1 1
R:R:F281 R:R:I114 3.77 1 Yes No 9 8 2 2
R:R:I114 R:R:W285 10.57 1 No Yes 8 8 2 1
R:R:N179 R:R:P161 9.77 1 Yes Yes 5 7 2 2
R:R:P161 R:R:Y184 11.13 1 Yes Yes 7 8 2 1
R:R:W165 R:R:Y184 10.61 0 No Yes 6 8 2 1
R:R:N179 R:R:Y184 11.63 1 Yes Yes 5 8 2 1
R:R:S188 R:R:Y184 5.09 0 No Yes 7 8 2 1
R:R:F193 R:R:Y194 10.32 1 Yes No 8 6 2 2
R:R:F193 R:R:F281 5.36 1 Yes Yes 8 9 2 2
R:R:F193 R:R:F289 20.36 1 Yes Yes 8 7 2 1
R:R:F289 R:R:Y194 3.09 1 Yes No 7 6 1 2
R:R:F281 R:R:W285 4.01 1 Yes Yes 9 8 2 1
R:R:F288 R:R:W285 7.02 1 Yes Yes 7 8 1 1
R:R:F289 R:R:W285 6.01 1 Yes Yes 7 8 1 1
R:R:G315 R:R:W285 9.85 0 No Yes 7 8 2 1
R:R:N318 R:R:W285 7.91 0 No Yes 9 8 2 1
R:R:F288 R:R:F289 9.65 1 Yes Yes 7 7 1 1
R:R:F288 R:R:M292 6.22 1 Yes Yes 7 7 1 2
R:R:F288 R:R:F312 3.22 1 Yes Yes 7 6 1 1
R:R:F308 R:R:M292 3.73 0 No Yes 4 7 2 2
R:R:F308 R:R:F312 5.36 0 No Yes 4 6 2 1
R:R:F312 R:R:Y316 8.25 1 Yes Yes 6 7 1 1
R:R:W313 R:R:Y316 11.58 1 Yes Yes 6 7 2 1
R:R:A189 R:R:F289 2.77 0 No Yes 7 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7YM8_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.07
Number of Linked Nodes 255
Number of Links 284
Number of Hubs 41
Number of Links mediated by Hubs 150
Number of Communities 5
Number of Nodes involved in Communities 47
Number of Links involved in Communities 70
Path Summary
Number Of Nodes in MetaPath 60
Number Of Links MetaPath 59
Number of Shortest Paths 48104
Length Of Smallest Path 3
Average Path Length 13.3392
Length of Longest Path 32
Minimum Path Strength 1.11
Average Path Strength 6.16808
Maximum Path Strength 19.45
Minimum Path Correlation 0.7
Average Path Correlation 0.91746
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 44.8475
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.7495
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeJ5C
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeJ5C
NameOxymetazoline
SynonymsOxymetozoline
Identifier
FormulaC16 H24 N2 O
Molecular Weight260.375
SMILES
PubChem4636
Formal Charge0
Total Atoms43
Total Chiral Atoms0
Total Bonds44
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP35348
Sequence
>7YM8_nogp_Chain_R
SKAILLGVI LGGLILFGV LGNILVILS VACHRHLHS VTHYYIVNL 
AVADLLLTS TVLPFSAIF EVLGYWAFG RVFCNIWAA VDVLCCTAS 
IMGLCIISI DRYIGVSYP LRYPTIVTQ RRGLMALLC VWALSLVIS 
IGPLFGWRQ PAPEDETIC QINEEPGYV LFSALGSFY LPLAIILVM 
YCRVYVVAK RELKFSREK KAAKTLGIV VGCFVLCWL PFFLVMPIG 
SFFPDFKPS ETVFKIVFW LGYLNSCIN PIIYPCSSQ EFKKAFQNV 
L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9M4QAAmineAdrenegicAlpha1AHomo sapiensDoxazosin--2.992025-07-02doi.org/10.1016/j.jbc.2025.110348
9M4TAAmineAdrenegicAlpha1AHomo sapiensSilodosin--3.192025-07-02doi.org/10.1016/j.jbc.2025.110348
7YM8AAmineAdrenergicAlpha1AHomo sapiensOxymetazoline-chim(Gs-CtGq)2.922023-07-05doi.org/10.1038/s41467-023-39310-x
7YM8 (No Gprot) AAmineAdrenergicAlpha1AHomo sapiensOxymetazoline-2.922023-07-05doi.org/10.1038/s41467-023-39310-x
7YMHAAmineAdrenergicAlpha1AHomo sapiensNorepinephrine-chim(Gs-CtGq)3.522023-07-05doi.org/10.1038/s41467-023-39310-x
7YMH (No Gprot) AAmineAdrenergicAlpha1AHomo sapiensNorepinephrine-3.522023-07-05doi.org/10.1038/s41467-023-39310-x
7YMJAAmineAdrenergicAlpha1AHomo sapiensTamsulosin--3.352023-07-05doi.org/10.1038/s41467-023-39310-x
8THKAAmineAdrenergicAlpha1AHomo sapiensA61603-chim(NtGi2L-Gs-CtGq)/β1/γ22.62023-08-16doi.org/10.1038/s41467-023-40524-2
8THK (No Gprot) AAmineAdrenergicAlpha1AHomo sapiensA61603-2.62023-08-16doi.org/10.1038/s41467-023-40524-2
8THLAAmineAdrenergicAlpha1AHomo sapiensEpinephrine-chim(NtGi2L-Gs-CtGq)/β1/γ23.12023-08-16doi.org/10.1038/s41467-023-40524-2
8THL (No Gprot) AAmineAdrenergicAlpha1AHomo sapiensEpinephrine-3.12023-08-16doi.org/10.1038/s41467-023-40524-2
8HN1AAmineAdrenergicAlpha1AHomo sapiensToxin AdTx1--2.92023-12-20To be published
9IQVAAmineAdrenegicAlpha1AHomo sapiens-Muscarinic toxin 3-3.32025-07-23To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7YM8_nogp.zip



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