Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.08667910
2R:R:L33 5.92407
3R:R:I37 3.544505
4R:R:L57 5.4275448
5R:R:V60 3.2825407
6R:R:Y64 4.83408
7R:R:D72 7.018539
8R:R:L75 5.255418
9R:R:V79 4.67833618
10R:R:L80 6.3075418
11R:R:L89 3.21405
12R:R:W92 6.23833628
13R:R:F94 4.51425
14R:R:W102 5.905405
15R:R:R124 6.17439
16R:R:Y125 8.5075408
17R:R:Y134 5.13407
18R:R:V138 3.9325406
19R:R:W151 5.33559
20R:R:S158 4.995408
21R:R:I175 7.055465
22R:R:Y184 7.4175478
23R:R:F193 9.002508
24R:R:Y204 7.125409
25R:R:Y208 5.302585
26R:R:F281 4.5519
27R:R:W285 8.76833618
28R:R:L286 3.5425407
29R:R:F289 7.63517
30R:R:M292 4.35507
31R:R:F298 3.6975404
32R:R:P303 4.1925404
33R:R:W313 5.41616
34R:R:Y316 7.18875817
35R:R:N322 5.9775439
36R:R:Y326 5.032539
37R:R:F333 6.04167648
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y316 57.25324.35YesYes107
2R:R:L80 R:R:Y316 16.487111.72YesYes187
3R:R:I37 R:R:L80 12.3387.14YesYes058
4R:R:W313 R:R:Y316 43.40565.79YesYes167
5R:R:L33 R:R:W313 27.869611.39YesYes076
6R:R:L36 R:R:W313 11.7362.28NoYes076
7L:L:?1 R:R:C110 34.66695.89YesNo006
8R:R:C110 R:R:W285 58.74537.84NoYes068
9R:R:N318 R:R:W285 19.213813.56NoYes098
10R:R:N318 R:R:N322 16.70085.45NoYes099
11R:R:D72 R:R:N322 12.21156.73YesYes399
12R:R:D72 R:R:N44 11.57026.73YesNo099
13L:L:?1 R:R:F289 73.01175.65YesYes107
14R:R:F289 R:R:W285 38.29244.01YesYes178
15R:R:F281 R:R:W285 72.29187.02YesYes198
16R:R:F281 R:R:I200 1003.77YesNo098
17R:R:I200 R:R:S121 96.68439.29NoNo089
18R:R:M203 R:R:S121 83.63073.07NoNo069
19R:R:M203 R:R:Y125 80.969415.57NoYes068
20R:R:I126 R:R:Y125 71.383.63NoYes058
21R:R:I126 R:R:V138 69.95773.07NoYes056
22R:R:V138 R:R:Y134 40.74876.31YesYes067
23R:R:D123 R:R:Y134 36.2555.75NoYes097
24R:R:D123 R:R:T61 36.150310.12NoNo098
25R:R:S59 R:R:T61 34.80213.2NoNo078
26R:R:H62 R:R:S59 33.179213.95NoNo087
27R:R:F333 R:R:H62 19.77669.05YesNo488
28R:R:F333 R:R:P327 12.10684.33YesNo087
29R:R:P327 R:R:V47 10.35733.53NoNo079
30R:R:F193 R:R:F289 45.525918.22YesYes087
31R:R:F193 R:R:F281 41.72594.29YesYes089
32R:R:C110 R:R:L75 27.85663.17NoYes068
33R:R:L75 R:R:Y316 16.8237.03YesYes187
34R:R:H62 R:R:L57 11.74919NoYes488
35R:R:V138 R:R:V60 26.72224.81YesYes067
36R:R:V60 R:R:Y64 18.32825.05YesYes078
37R:R:I119 R:R:Y64 15.85886.04NoYes078
38L:L:?1 R:R:V107 25.971812.44YesNo006
39R:R:S158 R:R:V107 24.0263.23YesNo086
40R:R:L108 R:R:S158 14.1666.01NoYes068
41R:R:L108 R:R:W151 12.16794.56NoYes069
42R:R:F281 R:R:L117 16.60493.65YesNo098
43R:R:V79 R:R:W102 12.14176.13YesYes085
44R:R:W102 R:R:W92 13.904311.25YesYes058
45R:R:G30 R:R:L33 23.54611.71NoYes067
46R:R:G30 R:R:V88 21.18581.84NoNo065
47R:R:L89 R:R:V88 16.85351.49YesNo055
48L:L:?1 R:R:S188 38.51492.79YesNo007
49R:R:S188 R:R:Y184 36.7962.54NoYes078
50R:R:N179 R:R:Y184 17.39024.65NoYes758
51R:R:N179 R:R:R166 15.823913.26NoNo055
52R:R:A169 R:R:R166 13.83452.77NoNo035
53R:R:A169 R:R:P170 12.16791.87NoNo034
54R:R:I119 R:R:V150 12.39473.07NoNo076
55R:R:M115 R:R:V150 10.64967.61NoNo066
56R:R:S121 R:R:Y204 27.245810.17NoYes099
57R:R:V277 R:R:Y204 17.73055.05NoYes089
58R:R:L274 R:R:V277 14.4542.98NoNo098
59R:R:W165 R:R:Y184 14.1665.79NoYes068
60R:R:F193 R:R:L286 26.82263.65YesYes087
61R:R:L286 R:R:P287 23.70753.28YesNo079
62R:R:P287 R:R:V311 20.65793.53NoNo095
63R:R:V291 R:R:V311 19.57594.81NoNo055
64R:R:P303 R:R:V291 18.48521.77YesNo045
65R:R:F301 R:R:P303 11.906111.56NoYes034
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D106 12.59 1 Yes No 0 7 0 1
L:L:?1 R:R:V107 12.44 1 Yes No 0 6 0 1
L:L:?1 R:R:C110 5.89 1 Yes No 0 6 0 1
L:L:?1 R:R:I178 5.3 1 Yes No 0 6 0 1
L:L:?1 R:R:F288 21.47 1 Yes No 0 7 0 1
L:L:?1 R:R:F289 5.65 1 Yes Yes 0 7 0 1
L:L:?1 R:R:F312 11.3 1 Yes No 0 6 0 1
L:L:?1 R:R:Y316 4.35 1 Yes Yes 0 7 0 1
R:R:L75 R:R:V79 4.47 1 Yes Yes 8 8 2 2
R:R:C110 R:R:L75 3.17 0 No Yes 6 8 1 2
R:R:L75 R:R:Y316 7.03 1 Yes Yes 8 7 2 1
R:R:D106 R:R:V79 7.3 1 No Yes 7 8 1 2
R:R:V79 R:R:Y316 3.79 1 Yes Yes 8 7 2 1
R:R:L80 R:R:W313 3.42 1 Yes Yes 8 6 2 2
R:R:L80 R:R:Y316 11.72 1 Yes Yes 8 7 2 1
R:R:S83 R:R:W313 4.94 1 No Yes 7 6 2 2
R:R:S83 R:R:Y316 5.09 1 No Yes 7 7 2 1
R:R:D106 R:R:Y316 11.49 1 No Yes 7 7 1 1
R:R:S158 R:R:V107 3.23 0 Yes No 8 6 2 1
R:R:C110 R:R:W285 7.84 0 No Yes 6 8 1 2
R:R:E180 R:R:I178 4.1 0 No No 5 6 2 1
R:R:F312 R:R:I178 3.77 1 No No 6 6 1 1
R:R:E180 R:R:M292 5.41 0 No Yes 5 7 2 2
R:R:F193 R:R:F289 18.22 0 Yes Yes 8 7 2 1
R:R:F289 R:R:W285 4.01 1 Yes Yes 7 8 1 2
R:R:F288 R:R:F289 7.5 1 No Yes 7 7 1 1
R:R:F288 R:R:M292 7.46 1 No Yes 7 7 1 2
R:R:F312 R:R:Y316 8.25 1 No Yes 6 7 1 1
R:R:W313 R:R:Y316 5.79 1 Yes Yes 6 7 2 1
L:L:?1 R:R:S188 2.79 1 Yes No 0 7 0 1
R:R:A189 R:R:F289 2.77 0 No Yes 7 7 2 1
R:R:S188 R:R:Y184 2.54 0 No Yes 7 8 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7YMH_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.07
Number of Linked Nodes 251
Number of Links 272
Number of Hubs 37
Number of Links mediated by Hubs 149
Number of Communities 8
Number of Nodes involved in Communities 43
Number of Links involved in Communities 54
Path Summary
Number Of Nodes in MetaPath 66
Number Of Links MetaPath 65
Number of Shortest Paths 47405
Length Of Smallest Path 3
Average Path Length 13.3773
Length of Longest Path 31
Minimum Path Strength 1.19
Average Path Strength 6.01804
Maximum Path Strength 17.03
Minimum Path Correlation 0.7
Average Path Correlation 0.912674
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 43.1131
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.5883
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• hydrolase activity, acting on glycosyl bonds   • peptidoglycan muralytic activity   • hydrolase activity, hydrolyzing O-glycosyl compounds   • lysozyme activity   • hydrolase activity   • catalytic activity   • protein heterodimerization activity   • protein binding   • binding   • protein dimerization activity   • alpha1-adrenergic receptor activity   • alpha-adrenergic receptor activity   • G protein-coupled amine receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • adrenergic receptor activity   • biological process involved in interspecies interaction between organisms   • response to stimulus   • response to other organism   • defense response   • response to external stimulus   • response to biotic stimulus   • defense response to bacterium   • defense response to other organism   • response to stress   • response to bacterium   • response to external biotic stimulus   • carbohydrate derivative catabolic process   • catabolic process   • peptidoglycan catabolic process
Gene OntologyBiological Process• biological process involved in interspecies interaction between organisms   • response to stimulus   • response to other organism   • defense response   • response to external stimulus   • response to biotic stimulus   • defense response to bacterium   • defense response to other organism   • response to stress   • response to bacterium   • response to external biotic stimulus   • carbohydrate derivative catabolic process   • catabolic process   • peptidoglycan catabolic process   • glycosaminoglycan metabolic process   • carbohydrate derivative metabolic process   • aminoglycan catabolic process   • macromolecule catabolic process   • glycosaminoglycan catabolic process   • aminoglycan metabolic process   • peptidoglycan metabolic process   • metabolic process   • cellular process   • macromolecule metabolic process   • symbiont-mediated cytolysis of host cell   • viral life cycle   • disruption of cell in another organism   • cytolysis   • biological process involved in interaction with host   • biological process involved in symbiotic interaction   • viral release from host cell by cytolysis   • exit from host cell   • viral process   • cytolysis in another organism   • viral release from host cell   • disruption of anatomical structure in another organism   • symbiont-mediated killing of host cell   • killing of cells of another organism   • cell killing   • cell wall organization or biogenesis   • cell wall macromolecule catabolic process   • cell wall macromolecule metabolic process   • response to chemical   • response to xenobiotic stimulus   • positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • regulation of biological process   • signaling   • cell-cell signaling   • neuron-glial cell signaling   • cell communication   • cellular response to stimulus   • positive regulation of cell communication   • regulation of cellular process   • positive regulation of signal transduction   • positive regulation of biological process   • regulation of signal transduction   • intracellular signal transduction   • positive regulation of response to stimulus   • positive regulation of ERK1 and ERK2 cascade   • regulation of intracellular signal transduction   • intracellular signaling cassette   • signal transduction   • positive regulation of cellular process   • regulation of signaling   • positive regulation of MAPK cascade   • positive regulation of intracellular signal transduction   • regulation of MAPK cascade   • regulation of response to stimulus   • MAPK cascade   • regulation of cell communication   • ERK1 and ERK2 cascade   • regulation of ERK1 and ERK2 cascade   • positive regulation of signaling   • regulation of tube diameter   • multicellular organismal process   • system process   • regulation of tube size   • regulation of system process   • positive regulation of vasoconstriction   • circulatory system process   • regulation of blood circulation   • vascular process in circulatory system   • regulation of vasoconstriction   • positive regulation of multicellular organismal process   • regulation of multicellular organismal process   • blood vessel diameter maintenance   • vasoconstriction   • blood circulation   • regulation of anatomical structure size   • heart process   • negative regulation of heart rate   • regulation of systemic arterial blood pressure by carotid sinus baroreceptor feedback   • regulation of heart contraction   • negative regulation of biological process   • negative regulation of blood pressure   • negative regulation of systemic arterial blood pressure   • nervous system process involved in regulation of systemic arterial blood pressure   • regulation of heart rate   • nervous system process   • regulation of blood pressure   • regulation of systemic arterial blood pressure by baroreceptor feedback   • negative regulation of blood circulation   • negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure   • baroreceptor response to increased systemic arterial blood pressure   • negative regulation of heart contraction   • regulation of systemic arterial blood pressure   • heart contraction   • negative regulation of multicellular organismal process   • phospholipase C-activating G protein-coupled receptor signaling pathway   • phospholipase C-activating adrenergic receptor signaling pathway   • adrenergic receptor signaling pathway   • G protein-coupled receptor signaling pathway   • regulation of systemic arterial blood pressure mediated by a chemical signal   • positive regulation of blood pressure   • positive regulation of blood circulation   • regulation of systemic arterial blood pressure by norepinephrine-epinephrine   • positive regulation of blood pressure by epinephrine-norepinephrine   • positive regulation of heart rate   • positive regulation of heart rate by epinephrine-norepinephrine   • positive regulation of heart contraction   • reflex   • pilomotor reflex   • modulation of chemical synaptic transmission   • positive regulation of synaptic transmission, GABAergic   • synaptic signaling   • trans-synaptic signaling   • synaptic transmission, GABAergic   • positive regulation of synaptic transmission   • chemical synaptic transmission   • regulation of trans-synaptic signaling   • anterograde trans-synaptic signaling   • regulation of synaptic transmission, GABAergic   • smooth muscle contraction   • muscle contraction   • muscle system process   • apoptotic process   • cell death   • programmed cell death   • norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure   • regulation of action potential   • positive regulation of action potential   • action potential   • regulation of membrane potential   • adenylate cyclase-activating adrenergic receptor signaling pathway   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • negative regulation of cell population proliferation   • cell population proliferation   • regulation of cell population proliferation   • negative regulation of cellular process   • muscle hypertrophy   • regulation of muscle adaptation   • positive regulation of cardiac muscle hypertrophy   • striated muscle hypertrophy   • regulation of muscle system process   • regulation of cardiac muscle hypertrophy   • regulation of muscle hypertrophy   • muscle adaptation   • positive regulation of muscle hypertrophy   • cardiac muscle hypertrophy   • negative regulation of catabolic process   • negative regulation of metabolic process   • autophagy   • regulation of catabolic process   • regulation of autophagy   • negative regulation of autophagy   • process utilizing autophagic mechanism   • regulation of metabolic process   • positive regulation of smooth muscle contraction   • regulation of muscle contraction   • regulation of smooth muscle contraction   • positive regulation of muscle contraction   • cellular developmental process   • cardiac muscle cell development   • developmental growth   • cell development   • organ growth   • muscle cell differentiation   • cell growth   • striated muscle tissue development   • muscle structure development   • multicellular organism development   • striated muscle cell development   • muscle cell development   • cell differentiation   • anatomical structure development   • cardiac cell development   • muscle tissue development   • cardiac muscle tissue growth   • system development   • developmental process   • heart development   • heart growth   • developmental cell growth   • cardiac muscle tissue development   • physiological muscle hypertrophy   • growth   • animal organ development   • cardiac muscle cell differentiation   • tissue development   • cardiocyte differentiation   • circulatory system development   • cell growth involved in cardiac muscle cell development   • physiological cardiac muscle hypertrophy   • striated muscle cell differentiation   • regulation of the force of heart contraction by chemical signal   • regulation of the force of heart contraction   • positive regulation of the force of heart contraction by chemical signal   • positive regulation of the force of heart contraction by epinephrine-norepinephrine   • adult heart development   • response to hormone   • response to endogenous stimulus   • positive regulation of cardiac muscle contraction   • cardiac muscle contraction   • striated muscle contraction   • positive regulation of striated muscle contraction   • regulation of cardiac muscle contraction   • regulation of striated muscle contraction   • host cellular component   • host intracellular part   • cellular anatomical structure   • host cell cytoplasm   • host cell part   • host intracellular region   • membrane-bounded organelle   • intracellular anatomical structure   • nuclear membrane   • membrane   • nucleus   • intracellular membrane-bounded organelle   • endomembrane system   • intracellular organelle
Gene OntologyCellular Component• host cellular component   • host intracellular part   • cellular anatomical structure   • host cell cytoplasm   • host cell part   • host intracellular region   • membrane-bounded organelle   • intracellular anatomical structure   • nuclear membrane   • membrane   • nucleus   • intracellular membrane-bounded organelle   • endomembrane system   • intracellular organelle   • organelle envelope   • organelle   • nuclear envelope   • organelle membrane   • cytoplasm   • cytosol   • membrane microdomain   • cell periphery   • membrane raft   • plasma membrane raft   • plasma membrane   • plasma membrane region   • caveola   • membrane-enclosed lumen   • intracellular organelle lumen   • nucleoplasm   • organelle lumen   • nuclear lumen
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeE5E
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeE5E
NameNoradrenaline
Synonyms
Identifier
FormulaC8 H12 N O3
Molecular Weight170.186
SMILES
PubChem6921840
Formal Charge1
Total Atoms24
Total Chiral Atoms1
Total Bonds24
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP35348
Sequence
>7YMH_nogp_Chain_R
KAILLGVIL GGLILFGVL GNILVILSV ACHRHLHSV THYYIVNLA 
VADLLLTST VLPFSAIFE VLGYWAFGR VFCNIWAAV DVLCCTASI 
MGLCIISID RYIGVSYPL RYPTIVTQR RGLMALLCV WALSLVISI 
GPLFGWRQP APEDETICQ INEEPGYVL FSALGSFYL PLAIILVMY 
CRVYVVAKR ELKFSREKK AAKTLGIVV GCFVLCWLP FFLVMPIGS 
FFPDFKPSE TVFKIVFWL GYLNSCINP IIYPCSSQE FKKAFQNVL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8HN1AAmineAdrenergicAlpha1AHomo sapiensToxin AdTx1--2.92023-12-20To be published
8THLAAmineAdrenergicAlpha1AHomo sapiensEpinephrine-chim(NtGi2L-Gs-CtGq)/β1/γ23.12023-08-1610.1038/s41467-023-40524-2
8THL (No Gprot) AAmineAdrenergicAlpha1AHomo sapiensEpinephrine-3.12023-08-1610.1038/s41467-023-40524-2
8THKAAmineAdrenergicAlpha1AHomo sapiensA61603-chim(NtGi2L-Gs-CtGq)/β1/γ22.62023-08-1610.1038/s41467-023-40524-2
8THK (No Gprot) AAmineAdrenergicAlpha1AHomo sapiensA61603-2.62023-08-1610.1038/s41467-023-40524-2
7YMJAAmineAdrenergicAlpha1AHomo sapiensTamsulosin--3.352023-07-0510.1038/s41467-023-39310-x
7YMHAAmineAdrenergicAlpha1AHomo sapiensNorepinephrine-chim(Gs-CtGq)3.522023-07-0510.1038/s41467-023-39310-x
7YMH (No Gprot) AAmineAdrenergicAlpha1AHomo sapiensNorepinephrine-3.522023-07-0510.1038/s41467-023-39310-x
7YM8AAmineAdrenergicAlpha1AHomo sapiensOxymetazoline-chim(Gs-CtGq)2.922023-07-0510.1038/s41467-023-39310-x
7YM8 (No Gprot) AAmineAdrenergicAlpha1AHomo sapiensOxymetazoline-2.922023-07-0510.1038/s41467-023-39310-x




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Download 7YMH_nogp.zip



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