Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:P31 3.4575406
2R:R:L34 4.475468
3R:R:N45 6.27519
4R:R:F52 5.55333617
5R:R:F65 6.1407
6R:R:F67 4.382516
7R:R:D73 8.632519
8R:R:L76 7.67407
9R:R:Y87 4.486566
10R:R:W91 6.318504
11R:R:W93 10.046109
12R:R:F95 10.0025407
13R:R:M109 7.17435
14R:R:I115 7.7525458
15R:R:Y126 7.425627
16R:R:F127 6.108525
17R:R:V129 4.7825408
18R:R:V130 7.3075428
19R:R:W152 6.874539
20R:R:F180 5.154503
21R:R:L194 4.47404
22R:R:F197 7.852558
23R:R:L201 4.5925457
24R:R:I212 2.8275475
25R:R:L215 4.3975408
26R:R:I230 3.52476
27R:R:I233 4.5025407
28R:R:F240 5.95333659
29R:R:Y269 4.988502
30R:R:F276 7.422504
31R:R:Y284 6.31667667
32R:R:M285 4.9275405
33R:R:N286 7.285419
34R:R:D290 7.4275419
35R:R:Y294 5.14556919
36R:R:F296 6.644548
37R:R:F304 10.5475404
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F180 R:R:L176 14.87856.09YesNo034
2R:R:L176 R:R:W91 16.38513.42NoYes044
3R:R:F276 R:R:F277 18.171110.72YesNo045
4R:R:L258 R:R:Y269 11.66937.03NoYes032
5R:R:L258 R:R:T185 12.40575.9NoNo032
6R:R:Q187 R:R:T185 13.13684.25NoNo022
7R:R:H184 R:R:Q187 13.86276.18NoNo032
8R:R:E190 R:R:H184 14.580820.92NoNo043
9R:R:E190 R:R:F255 18.03275.83NoNo045
10R:R:F186 R:R:F255 18.722112.86NoNo045
11R:R:F186 R:R:L194 20.07734.87NoYes044
12R:R:F193 R:R:L194 25.60773.65NoYes064
13R:R:F193 R:R:R251 38.78899.62NoNo065
14R:R:F276 R:R:R251 40.12856.41YesNo045
15R:R:I26 R:R:L274 15.58092.85NoNo051
16R:R:F277 R:R:I26 10.50477.54NoNo055
17R:R:I26 R:R:L30 15.46348.56NoNo055
18R:R:W91 R:R:Y87 21.53176.75YesYes046
19R:R:E37 R:R:V33 29.19294.28NoNo075
20R:R:S281 R:R:V33 30.69173.23NoNo065
21R:R:L30 R:R:S281 32.14353NoNo056
22R:R:F276 R:R:L280 35.0553.65YesNo045
23R:R:L280 R:R:Y284 35.38928.21NoYes057
24R:R:L34 R:R:Y284 22.14274.69YesYes687
25R:R:L34 R:R:L80 21.03044.15YesNo088
26R:R:L76 R:R:Y284 84.16598.21YesYes077
27R:R:L76 R:R:L80 21.54744.15YesNo078
28R:R:L83 R:R:Y284 21.23935.86NoYes667
29R:R:E37 R:R:M285 27.68896.77NoYes075
30R:R:L76 R:R:V287 1005.96YesNo078
31R:R:D73 R:R:V287 99.237510.22YesNo098
32R:R:D73 R:R:Y294 88.57873.45YesYes199
33R:R:F52 R:R:Y294 77.00865.16YesYes179
34R:R:F52 R:R:R63 74.82575.34YesNo077
35R:R:L56 R:R:R63 73.76824.86NoNo057
36R:R:L56 R:R:S300 74.55684.5NoNo055
37R:R:S298 R:R:S300 74.03456.52NoNo085
38R:R:S297 R:R:S298 70.82283.26NoNo068
39R:R:F232 R:R:S297 70.14913.96NoNo076
40R:R:F232 R:R:R125 34.577119.24NoNo079
41R:R:R125 R:R:R128 33.78078.53NoNo098
42R:R:D124 R:R:R128 31.89284.76NoNo988
43R:R:D124 R:R:F65 31.05474.78NoYes087
44R:R:F65 R:R:V120 20.62569.18YesNo077
45R:R:F117 R:R:L151 17.66466.09NoNo087
46R:R:L151 R:R:V120 19.64384.47NoNo077
47R:R:F117 R:R:W152 14.583412.03NoYes389
48R:R:L107 R:R:Y284 13.35354.69NoYes067
49R:R:L107 R:R:M103 12.58855.65NoNo065
50R:R:M109 R:R:W152 10.57264.65YesYes359
51R:R:F193 R:R:R111 15.03518.55NoNo068
52R:R:I115 R:R:R111 10.21756.26YesNo088
53R:R:F232 R:R:V236 43.17836.55NoNo078
54R:R:I233 R:R:V236 42.32713.07YesNo078
55R:R:I211 R:R:I233 28.30257.36NoYes087
56R:R:I211 R:R:Y126 16.29893.63NoYes087
57R:R:H131 R:R:Y126 10.33766.53NoYes277
58R:R:I211 R:R:V129 12.02446.14NoYes088
59R:R:I212 R:R:I233 11.80772.94YesYes057
60R:R:I226 R:R:L215 12.11582.85NoYes068
61R:R:L289 R:R:M285 17.01444.24NoYes075
62R:R:L289 R:R:V239 15.46864.47NoNo077
63R:R:V239 R:R:V293 13.91754.81NoNo078
64R:R:V235 R:R:V293 12.36133.21NoNo058
65R:R:L30 R:R:Y87 39.59844.69NoYes056
66R:R:L34 R:R:Y87 40.65333.52YesYes686
67R:R:L83 R:R:Y87 20.83194.69NoYes666
68R:R:M103 R:R:W93 10.32725.82NoYes059
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 7ZL9
Class A
SubFamily Alicarboxylic acid
Type Hydroxycarboxylic acid
SubType HCA2
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.7
Date 2023-04-12 
D.O.I. 10.1038/s41467-023-37177-6
Net Summary
Imin 3.26
Number of Linked Nodes 285
Number of Links 322
Number of Hubs 37
Number of Links mediated by Hubs 150
Number of Communities 10
Number of Nodes involved in Communities 54
Number of Links involved in Communities 71
Path Summary
Number Of Nodes in MetaPath 69
Number Of Links MetaPath 68
Number of Shortest Paths 62933
Length Of Smallest Path 3
Average Path Length 17.6605
Length of Longest Path 42
Minimum Path Strength 1.215
Average Path Strength 6.18807
Maximum Path Strength 20.5833
Minimum Path Correlation 0.7
Average Path Correlation 0.930254
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.85714
Average % Of Corr. Nodes 42.5463
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 36.0111
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDS4
Sequence
>7ZL9_Chain_R
LEIDKKNCC VFRDDFIVK VLPPVLGLE FIFGLLGNG LALWIFCFH 
LKSWKSSRI FLFNLVVAD FLLIICLPF LMDNYVRRW DWKFGDIPC 
RLMLFMLAM NRQGSIIFL TVVAVDRYF RVVHPHHAL NKISNRTAA 
IISCLLWGI TIGLTVHLL KKKMPIQNA NLCSSFSIC HTFQWHEAM 
FLLEFFLPL GIILFCSAR IIWSLRQRQ MDRHAKIKR AITFIMVVA 
IVFVICFLP SVVVRIRIF WLLHTSGTQ NCEVYRSVD LAFFITLSF 
TYMNVMLDP VVYYFSSPS FPNFFSTLI NRC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7XK2AAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensMK6892-Gi1/&β;1/&γ;23.12023-02-2210.1038/s41467-023-37177-6
7ZLYAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiens---2.72023-04-1210.1038/s41467-023-37177-6
8H2GAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin-Gi1/&β;1/&γ;23.012023-10-11To be published
8I7VAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensAcipimox-Gi1/&β;1/&γ;22.772024-02-0710.1038/s41467-023-42764-8
8I7WAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensGSK256073-Gi1/&β;1/&γ;23.392024-02-0710.1038/s41467-023-42764-8
8IHBAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensGSK256073-Gi1/&β;1/&γ;22.852023-09-1310.1038/s41467-023-41650-7
8IHFAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensMK6892-Gi1/&β;1/&γ;22.972023-08-3010.1038/s41467-023-41650-7
8IHHAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensLUF6283-Gi1/&β;1/&γ;23.062023-08-3010.1038/s41467-023-41650-7
8IHIAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensAcifran-Gi1/&β;1/&γ;23.112023-08-3010.1038/s41467-023-41650-7
8IJ3AAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiens--Gi1/&β;1/&γ;23.282024-01-0310.1038/s41421-023-00610-7
8IJAAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin-Gi1/&β;1/&γ;22.692024-01-0310.1038/s41421-023-00610-7
8IJBAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensAcipimox-Gi1/&β;1/&γ;23.232024-01-0310.1038/s41421-023-00610-7
8IJDAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensMK6892-Gi1/&β;1/&γ;23.252024-01-0310.1038/s41421-023-00610-7
8IY9AAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin-Go/&β;1/&γ;23.372024-03-0610.1038/s41467-024-46239-2
8IYHAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensMK6892-Go/&β;1/&γ;23.32024-03-0610.1038/s41467-024-46239-2
8IYWAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensGSK256073-Go/&β;1/&γ;23.452024-03-0610.1038/s41467-024-46239-2
8J6IAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensMK6892-Gi1/&β;1/&γ;22.922024-04-0310.1016/j.celrep.2023.113406
8J6JAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensGSK256073-Gi1/&β;1/&γ;22.82024-01-1010.1016/j.celrep.2023.113406
8J6LAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin-Gi1/&β;1/&γ;23.052024-04-0310.1016/j.celrep.2023.113406
8J6PAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacinCompound 9nGi1/&β;1/&γ;22.552023-12-0610.1038/s41467-023-43537-z
8J6QAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensBeta-hydroxybutyrateCompound 9nGi1/&β;1/&γ;22.62023-12-0610.1038/s41467-023-43537-z
8J6RAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensMK6892-Gi1/&β;1/&γ;22.762023-12-0610.1038/s41467-023-43537-z
8JERAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensAcipimox-Go/&β;1/&γ;23.452024-03-0610.1038/s41467-024-46239-2
8JHNAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensMMF-Go/&β;1/&γ;23.752024-03-0610.1038/s41467-024-46239-2
8JHYAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiens-Compound 9nGi1/&β;1/&γ;22.872023-09-0610.1016/j.molcel.2023.07.030
8JIIAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacinCompound 9nGi1/&β;1/&γ;23.172023-09-0610.1016/j.molcel.2023.07.030
8JILAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin-Gi1/&β;1/&γ;23.52023-09-0610.1016/j.molcel.2023.07.030
8JIMAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensMMF-Gi1/&β;1/&γ;22.982023-09-0610.1016/j.molcel.2023.07.030
8JZ7AAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensMK6892-Gi1/&β;1/&γ;22.62023-10-0410.1038/s41392-023-01625-y
8K5BAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin--3.432023-11-2210.1038/s41467-023-42764-8
8K5CAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensAcipimox--3.132023-11-2210.1038/s41467-023-42764-8
8K5DAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensGSK256073--3.742023-11-2210.1038/s41467-023-42764-8




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7ZL9.zip



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