Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:K15 4.9425473
2R:R:R22 12.36533
3R:R:I26 6.6175405
4R:R:P31 3.4575406
5R:R:N45 6.27519
6R:R:F52 5.55333617
7R:R:R63 5.045407
8R:R:F65 6.1407
9R:R:F67 4.382516
10R:R:D73 9.9275419
11R:R:L76 7.67407
12R:R:Y87 4.81536
13R:R:W91 12.0475434
14R:R:W93 10.046119
15R:R:F95 10.0025407
16R:R:M109 7.17445
17R:R:Y126 7.425627
18R:R:F127 6.108525
19R:R:R128 6.2275488
20R:R:V129 4.4575408
21R:R:V130 7.3075428
22R:R:W152 6.874549
23R:R:N171 7.8975471
24R:R:F180 5.588573
25R:R:L194 4.47404
26R:R:F197 7.852568
27R:R:L201 4.5925467
28R:R:I212 2.8275495
29R:R:L215 4.3975408
30R:R:I230 3.52496
31R:R:I233 4.5025407
32R:R:F240 5.95333669
33R:R:Y269 4.988502
34R:R:F276 7.422504
35R:R:Y284 6.31667637
36R:R:M285 4.9275405
37R:R:N286 7.285419
38R:R:D290 7.4275419
39R:R:Y294 5.3575819
40R:R:F296 6.644558
41R:R:F304 10.5475404
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L176 R:R:W91 10.98983.42NoYes044
2R:R:F276 R:R:F277 11.191410.72YesNo045
3R:R:L258 R:R:Y269 10.47487.03NoYes032
4R:R:L258 R:R:T185 11.20415.9NoNo032
5R:R:Q187 R:R:T185 11.93094.25NoNo022
6R:R:H184 R:R:Q187 12.6556.18NoNo032
7R:R:E190 R:R:H184 13.375420.92NoNo043
8R:R:E190 R:R:F255 14.61465.83NoNo045
9R:R:F186 R:R:F255 15.258912.86NoNo045
10R:R:F186 R:R:L194 16.58424.87NoYes044
11R:R:F193 R:R:L194 22.78243.65NoYes064
12R:R:F193 R:R:R251 36.73879.62NoNo065
13R:R:F276 R:R:R251 38.41546.41YesNo045
14R:R:W91 R:R:Y87 10.41656.75YesYes346
15R:R:I26 R:R:L274 15.70532.85YesNo051
16R:R:E37 R:R:V33 13.94744.28NoNo075
17R:R:S281 R:R:V33 14.6643.23NoNo065
18R:R:L30 R:R:S281 15.35783NoNo056
19R:R:F276 R:R:L280 45.6323.65YesNo045
20R:R:L280 R:R:Y284 46.12668.21NoYes057
21R:R:L76 R:R:Y284 1008.21YesYes077
22R:R:L83 R:R:Y284 38.74525.86NoYes367
23R:R:E37 R:R:M285 13.22836.77NoYes075
24R:R:L76 R:R:V287 68.74545.96YesNo078
25R:R:D73 R:R:V287 68.996510.22YesNo098
26R:R:D73 R:R:N45 36.06412.12YesYes199
27R:R:L76 R:R:N110 33.334612.36YesNo079
28R:R:N110 R:R:N286 33.297812.26NoYes099
29R:R:D290 R:R:N286 33.16854.04YesYes199
30R:R:D290 R:R:Y294 65.49486.9YesYes199
31R:R:D290 R:R:D73 33.116511.98YesYes199
32R:R:N45 R:R:Y294 34.00935.81YesYes199
33R:R:F52 R:R:Y294 89.05845.16YesYes179
34R:R:F52 R:R:R63 89.21065.34YesYes077
35R:R:K60 R:R:R63 84.1928.66NoYes077
36R:R:K60 R:R:S62 22.68736.12NoNo878
37R:R:K60 R:R:R128 60.84773.71NoYes878
38R:R:D124 R:R:S62 21.93648.83NoNo888
39R:R:D124 R:R:R128 23.66894.76NoYes888
40R:R:D124 R:R:F65 44.16464.78NoYes087
41R:R:F65 R:R:V120 32.89839.18YesNo077
42R:R:F117 R:R:L151 28.02816.09NoNo087
43R:R:L151 R:R:V120 31.27744.47NoNo077
44R:R:F117 R:R:W152 23.099512.03NoYes489
45R:R:L107 R:R:Y284 21.70054.69NoYes067
46R:R:L107 R:R:M103 21.01695.65NoNo065
47R:R:M103 R:R:W93 18.35735.82NoYes059
48R:R:M109 R:R:W152 16.57534.65YesYes459
49R:R:F193 R:R:R111 14.22778.55NoNo068
50R:R:R125 R:R:R128 40.09468.53NoYes098
51R:R:F232 R:R:R125 39.329819.24NoNo079
52R:R:F232 R:R:V236 37.87896.55NoNo078
53R:R:I233 R:R:V236 37.1093.07YesNo078
54R:R:I211 R:R:I233 24.97657.36NoYes087
55R:R:I211 R:R:Y126 15.32483.63NoYes087
56R:R:H131 R:R:Y126 10.30246.53NoYes277
57R:R:I212 R:R:I233 10.00432.94YesYes057
58R:R:I226 R:R:L215 10.13622.85NoYes068
59R:R:L30 R:R:Y87 19.20074.69NoYes056
60R:R:L83 R:R:Y87 38.53464.69NoYes366
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 7ZL9
Class A
SubFamily Alicarboxylic acid
Type Hydroxycarboxylic Acid
SubType HCA2
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.7
Date 2023-04-12 
D.O.I. 10.1038/s41467-023-37177-6
Net Summary
Imin 3.56
Number of Linked Nodes 282
Number of Links 320
Number of Hubs 41
Number of Links mediated by Hubs 162
Number of Communities 11
Number of Nodes involved in Communities 61
Number of Links involved in Communities 79
Path Summary
Number Of Nodes in MetaPath 61
Number Of Links MetaPath 60
Number of Shortest Paths 105472
Length Of Smallest Path 3
Average Path Length 19.4143
Length of Longest Path 43
Minimum Path Strength 1.215
Average Path Strength 6.87062
Maximum Path Strength 20.84
Minimum Path Correlation 0.7
Average Path Correlation 0.927994
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.0303
Average % Of Corr. Nodes 38.3651
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.9284
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• binding   • tetrapyrrole binding   • heme binding   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • nicotinic acid receptor activity   • electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • myeloid cell apoptotic process   • multicellular organismal process   • homeostatic process   • leukocyte apoptotic process   • cell death   • neutrophil homeostasis   • neutrophil apoptotic process   • multicellular organismal-level homeostasis   • leukocyte homeostasis   • immune system process
Gene OntologyBiological Process• electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • myeloid cell apoptotic process   • multicellular organismal process   • homeostatic process   • leukocyte apoptotic process   • cell death   • neutrophil homeostasis   • neutrophil apoptotic process   • multicellular organismal-level homeostasis   • leukocyte homeostasis   • immune system process   • inflammatory cell apoptotic process   • homeostasis of number of cells   • apoptotic process   • myeloid cell homeostasis   • programmed cell death   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • G protein-coupled receptor signaling pathway   • signal transduction   • cell communication   • protein localization   • positive regulation of cell communication   • regulation of localization   • establishment of protein localization   • system process   • nitrogen compound transport   • regulation of adiponectin secretion   • positive regulation of establishment of protein localization   • positive regulation of adiponectin secretion   • localization   • adiponectin secretion   • cellular macromolecule localization   • regulation of biological quality   • regulation of hormone levels   • establishment of protein localization to extracellular region   • protein secretion   • establishment of localization   • regulation of protein secretion   • regulation of secretion   • endocrine hormone secretion   • positive regulation of protein localization   • positive regulation of multicellular organismal process   • cellular localization   • regulation of hormone secretion   • regulation of protein localization   • transport   • positive regulation of biological process   • positive regulation of secretion by cell   • hormone secretion   • protein localization to extracellular region   • positive regulation of protein transport   • secretion by cell   • regulation of secretion by cell   • positive regulation of hormone secretion   • positive regulation of secretion   • signal release   • regulation of multicellular organismal process   • positive regulation of cellular process   • regulation of signaling   • secretion   • regulation of transport   • regulation of establishment of protein localization   • export from cell   • cell-cell signaling   • regulation of protein transport   • positive regulation of protein secretion   • endocrine process   • positive regulation of transport   • protein transport   • regulation of cellular localization   • macromolecule localization   • hormone transport   • regulation of cell communication   • positive regulation of signaling   • regulation of programmed cell death   • regulation of neutrophil apoptotic process   • positive regulation of myeloid cell apoptotic process   • positive regulation of neutrophil apoptotic process   • regulation of immune system process   • positive regulation of leukocyte apoptotic process   • positive regulation of immune system process   • regulation of leukocyte apoptotic process   • positive regulation of programmed cell death   • regulation of apoptotic process   • positive regulation of apoptotic process   • regulation of myeloid cell apoptotic process   • negative regulation of catabolic process   • lipid catabolic process   • catabolic process   • regulation of lipid metabolic process   • negative regulation of metabolic process   • negative regulation of biological process   • primary metabolic process   • regulation of catabolic process   • regulation of lipid catabolic process   • regulation of primary metabolic process   • negative regulation of cellular process   • regulation of metabolic process   • negative regulation of lipid metabolic process   • negative regulation of lipid catabolic process   • lipid metabolic process   • cellular anatomical structure   • periplasmic space   • cell junction   • cell periphery   • plasma membrane   • membrane
Gene OntologyCellular Component
SCOP2Domain Identifier• Cytochromes
SCOP2Family Identifier• Cytochromes
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDS4
Sequence
>7ZL9_Chain_R
LEIDKKNCC VFRDDFIVK VLPPVLGLE FIFGLLGNG LALWIFCFH 
LKSWKSSRI FLFNLVVAD FLLIICLPF LMDNYVRRW DWKFGDIPC 
RLMLFMLAM NRQGSIIFL TVVAVDRYF RVVHPHHAL NKISNRTAA 
IISCLLWGI TIGLTVHLL KKKMPIQNA NLCSSFSIC HTFQWHEAM 
FLLEFFLPL GIILFCSAR IIWSLRQRQ MDRHAKIKR AITFIMVVA 
IVFVICFLP SVVVRIRIF WLLHTSGTQ NCEVYRSVD LAFFITLSF 
TYMNVMLDP VVYYFSSPS FPNFFSTLI NRC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8J6LAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.052024-04-0310.1016/j.celrep.2023.113406
8J6IAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.922024-04-0310.1016/j.celrep.2023.113406
8JHNAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMMF-Go/β1/γ23.752024-03-0610.1038/s41467-024-46239-2
8JERAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-Go/β1/γ23.452024-03-0610.1038/s41467-024-46239-2
8IYWAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Go/β1/γ23.452024-03-0610.1038/s41467-024-46239-2
8IYHAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Go/β1/γ23.32024-03-0610.1038/s41467-024-46239-2
8IY9AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Go/β1/γ23.372024-03-0610.1038/s41467-024-46239-2
8I7WAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Gi1/β1/γ23.392024-02-0710.1038/s41467-023-42764-8
8I7VAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-Gi1/β1/γ22.772024-02-0710.1038/s41467-023-42764-8
8J6JAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Gi1/β1/γ22.82024-01-1010.1016/j.celrep.2023.113406
8IJDAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ23.252024-01-0310.1038/s41421-023-00610-7
8IJBAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-Gi1/β1/γ23.232024-01-0310.1038/s41421-023-00610-7
8IJAAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ22.692024-01-0310.1038/s41421-023-00610-7
8IJ3AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens--Gi1/β1/γ23.282024-01-0310.1038/s41421-023-00610-7
8J6RAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.762023-12-0610.1038/s41467-023-43537-z
8J6QAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensβ-HydroxybutyrateCompound 9nGi1/β1/γ22.62023-12-0610.1038/s41467-023-43537-z
8J6PAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacinCompound 9nGi1/β1/γ22.552023-12-0610.1038/s41467-023-43537-z
8K5DAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073--3.742023-11-2210.1038/s41467-023-42764-8
8K5CAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox--3.132023-11-2210.1038/s41467-023-42764-8
8K5BAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin--3.432023-11-2210.1038/s41467-023-42764-8
8H2GAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.012023-10-11To be published
8JZ7AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.62023-10-0410.1038/s41392-023-01625-y
8IHBAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Gi1/β1/γ22.852023-09-1310.1038/s41467-023-41650-7
8JIMAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMMF-Gi1/β1/γ22.982023-09-0610.1016/j.molcel.2023.07.030
8JILAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.52023-09-0610.1016/j.molcel.2023.07.030
8JIIAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacinCompound 9nGi1/β1/γ23.172023-09-0610.1016/j.molcel.2023.07.030
8JHYAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens-Compound 9nGi1/β1/γ22.872023-09-0610.1016/j.molcel.2023.07.030
8IHIAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcifran-Gi1/β1/γ23.112023-08-3010.1038/s41467-023-41650-7
8IHHAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensLUF6283-Gi1/β1/γ23.062023-08-3010.1038/s41467-023-41650-7
8IHFAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.972023-08-3010.1038/s41467-023-41650-7
7ZLYAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens---2.72023-04-1210.1038/s41467-023-37177-6
7XK2AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ23.12023-02-2210.1038/s41467-023-37177-6
8UUJAAlicarboxylic acidHydroxycarboxylic AcidHCA2Mus musculusFCH-2296413-Gi1/β1/γ22.622025-02-2610.1016/j.cell.2024.11.001
8UTDAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK1903-Gi1/β1/γ23.242025-02-2610.1016/j.cell.2024.11.001
9IQTAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin-Gi1/β1/γ22.92024-10-02doi.org/10.1016/j.jmb.2024.168795




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Download 7ZL9.zip



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